Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20pachinus_20[genbank_20GCA_5F900068735.1_202017-04-26] 277,083 sequences; 279,264,790 total letters Query= NC_008206.2 Length=78296 Score E Sequences producing significant alignments: (Bits) Value seq248049 196 2e-45 seq226360 113 2e-20 seq153771 105 3e-18 >seq248049 Length=1043 Score = 196 bits (216), Expect = 2e-45 Identities = 248/340 (73%), Gaps = 6/340 (2%) Strand=Plus/Plus Query 49005 ACTGTCGTCGGTAATCTGACCGCCGACCCCGAGCTGCGATTCACCCCGAGTGGCGCGGCT 49064 || || ||||| || ||||| ||||| ||||||||||| |||||| | |||||||| Sbjct 574 ACGGTGGTCGGCAACCTGACGGCCGATCCCGAGCTGCGCTTCACCGCCTCCGGCGCGGCC 633 Query 49065 GTCGCAAACTTCACGGTCGTGTCCAATGACCGTTTCCTCAA--GGAT----GGGGAGTGG 49118 || || |||||||| |||| || | ||| ||| | | | || |||||| Sbjct 634 GTTGCGAACTTCACCGTCGCATCGACCCCCCGGACGCTCGACCGCACCAGCGGCGAGTGG 693 Query 49119 CAGGATAAGGACCCCGTGTTCCTCCGCTGCAACGTGTGGCGTGAGTACGCTGAGAACGTC 49178 |||| || || | ||||| ||||||||| | ||||| || || ||||||||| Sbjct 694 AAGGACGGCGAGGCCCTCTTCCTGCGCTGCAACATCTGGCGGCAGGCTGCCGAGAACGTC 753 Query 49179 GCTGAGTCGCTGACACGCGGCACCACCGTGATCGTCACCGGCAAGCTCTCGCAGCGGAAC 49238 | |||||||| || |||||| || ||| |||||||||||| |||| |||||| | | Sbjct 754 ACGGAGTCGCTCACCCGCGGCTCCCGCGTCATCGTCACCGGCCGGCTCAAGCAGCGCAGC 813 Query 49239 TTCGAGGACCGCGAGGGGAACAAGCGCACCGTCGTGGAGCTGGAGGTCGATGAGATCGGA 49298 |||||| | || || | |||||||||||| | |||||||||||||| |||||||| Sbjct 814 TTCGAGACCAAGGAAGGCGAGAAGCGCACCGTCATCGAGCTGGAGGTCGACGAGATCGGC 873 Query 49299 CCCGCTCTGCGTTTCGCCACGGCGAAGGTGAGCAAGGCCG 49338 ||| | ||||| | ||| || || ||||| | ||||| || Sbjct 874 CCCTCGCTGCGGTACGCGACCGCCAAGGTCAACAAGGTCG 913 >seq226360 Length=376 Score = 113 bits (124), Expect = 2e-20 Identities = 205/297 (69%), Gaps = 14/297 (5%) Strand=Plus/Plus Query 49005 ACTGTCGTCGGTAATCTGACCGCCGACCCCGAGCTGCGATTCACCCCGAGTGGCGCGGCT 49064 || || ||||| || ||||| |||||||| |||||||| | ||| | ||| || || Sbjct 27 ACGGTGGTCGGCAACCTGACGGCCGACCCGGAGCTGCGCTACACGCAGAGCGGGCTCGCC 86 Query 49065 GTCGCAAACTTCACGGTCGTGTCCAATGACCGTTTCCTCAAGGATGGGGAGTGGCAGGAT 49124 || || |||||||| ||| | | ||| || || || |||| |||| Sbjct 87 GTGGCGAACTTCACCATCG----CCAGCACCCC--CCGCANNGA------GTGGAAGGAC 134 Query 49125 AAGGACCCCGTGTTCCTCCGCTGCAACGTG-TGGCGTGAGTACGCTGAGAACGTCGCTGA 49183 || || |||||||||| || | || |||||||||| ||| ||| ||||||| | Sbjct 135 GGCGAGGCCCTGTTCCTCCGG-GCCTCCTGCTGGCGTGAGTTCGCCGAGCACGTCGCCGG 193 Query 49184 GTCGCTGACACGCGGCACCACCGTGATCGTCACCGGCAAGCTCTCGCAGCGGAACTTCGA 49243 ||||||||| |||| | ||| |||| ||| || |||||| || ||| Sbjct 194 GTCGCTGACCAAGGGCAGCCGCGTCATCGCGCAGGGCCGCCTGAAGCAGCGCTCCTACGA 253 Query 49244 GGACCGCGAGGGGAACAAGCGCACCGTCGTGGAGCTGGAGGTCGATGAGATCGGACC 49300 |||||||| || ||||||||||||| | ||||| |||||||| |||||||| || Sbjct 254 CGACCGCGATGGCAACAAGCGCACCGCGATCGAGCTCGAGGTCGACGAGATCGGCCC 310 >seq153771 Length=831 Score = 105 bits (116), Expect = 3e-18 Identities = 218/325 (67%), Gaps = 6/325 (2%) Strand=Plus/Minus Query 49009 TCGTCGGTAATCTGACCGCCGACCCCGAGCTGCGATTCACCCCGAGTGGCGCGGCTGTCG 49068 ||||||| || || || ||||||||||||||| ||||| || ||||| || |||| Sbjct 421 TCGTCGGCAACCTCGTCGACGACCCCGAGCTGCGGTTCACGCCCTCGGGCGCCGCAGTCG 362 Query 49069 CAAACTTCACGGTCGTGTCCAATGACCGTTTCCTCAAGGATGGG------GAGTGGCAGG 49122 | |||||| ||| |||| || |||| | | || ||| ||| Sbjct 361 CCAACTTCCGCATCGCCTCCACCCCGCGCACGTTCAACCGTCAGACCAACGACTGGGAGG 302 Query 49123 ATAAGGACCCCGTGTTCCTCCGCTGCAACGTGTGGCGTGAGTACGCTGAGAACGTCGCTG 49182 | || | |||||||| |||| ||||||||| || || ||||||||||| | Sbjct 301 ACGGTGAGGGCATGTTCCTCACCTGCTCGGTGTGGCGTCAGGCGGCCGAGAACGTCGCGG 242 Query 49183 AGTCGCTGACACGCGGCACCACCGTGATCGTCACCGGCAAGCTCTCGCAGCGGAACTTCG 49242 |||| || ||||||| ||| ||||| || |||| | ||| | || || Sbjct 241 AGTCCTTGCAGCGCGGCATGCGCGTCGTCGTCCAGGGACGGCTCAAGTCGCGCACCTACG 182 Query 49243 AGGACCGCGAGGGGAACAAGCGCACCGTCGTGGAGCTGGAGGTCGATGAGATCGGACCCG 49302 || ||||||||| | |||||||||||| | ||| | |||||||| ||| |||| || Sbjct 181 AGACCCGCGAGGGCGAGAAGCGCACCGTCTTCGAGATCGAGGTCGAGGAGGTCGGGCCGA 122 Query 49303 CTCTGCGTTTCGCCACGGCGAAGGT 49327 ||| ||||||||||| ||||| Sbjct 121 GCCTGAAGTTCGCCACGGCCAAGGT 97 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 249576736311091