Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20pachinus_20[genbank_20GCA_5F900068735.1_202017-04-26] 277,083 sequences; 279,264,790 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq28654 154 1e-32 seq27512 145 7e-30 seq27511 143 2e-29 seq41046 132 4e-26 >seq28654 Length=3315 Score = 154 bits (170), Expect = 1e-32 Identities = 160/210 (76%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || ||||| |||||| | || || ||| ||||||| | || || ||| |||| Sbjct 2387 AATGCAGATCTTTGTTAAGACTCTTACAGGAAAAACCATCACTTTAGAGGTAGAGCCGTC 2328 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||||||||| ||||| ||| ||| |||||||| || ||||| || || || Sbjct 2327 CGACACTATCGAAAATGTGAAGGCAAAGATCCAAGACAAAGAGGGTATTCCCCCAGATCA 2268 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 |||| || |||||||||| || |||||| | ||||||| || || | ||||| || Sbjct 2267 ACAGAGGCTTATTTTTGCTGGAAAACAACTGGAAGATGGCCGTACATTATCTGATTATAA 2208 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGT 25207 ||||||||| ||||| || ||||||||||| Sbjct 2207 TATTCAAAAGGAATCTACCCTACATTTAGT 2178 Score = 145 bits (160), Expect = 7e-30 Identities = 163/215 (76%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||||||||| || || ||||| || || |||| || | ||||| || | ||| Sbjct 1474 ATGCAAATATTTGTCAAAACATTGACTGGAAAGACCATTACCCTGGAAGTAGAACCATCT 1415 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||| |||||| | || |||| |||| || || || || || || || || ||| Sbjct 1414 GACACAATCGAG--AATGTCAAAGCTAAAATACAG-GATAAGGAGGGCATCCCCCCAGAC 1358 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 |||||||| | |||||||| || || ||||| ||||||| ||||||| || |||||| Sbjct 1357 CAACAGCGTCTCATTTTTGCTGGAAAGCAATTGGAAGATGGTCGCACTTTGTCTGATTAC 1298 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 |||||||| ||||| || || || || |||||||| Sbjct 1297 AATATTCAGAAAGAGTCAACCCTGCACTTAGTGCT 1263 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| || || | || || ||| | || || | ||||| || | ||| Sbjct 2158 ATGCAAATCTTTGTTAAAACACTCACTGGAAAAACAATTACTTTAGAAGTTGAAGCTTCT 2099 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || || |||| |||||| ||||||||||| ||||| || || ||| Sbjct 2098 GACACAATTGAAAATGTGAAAGCTAAAATCCAAGACAAAGAAGGCATTCCTCCGGATCAA 2039 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || || |||||||||| ||||| ||||||||||||| ||| || || || ||||| Sbjct 2038 CAACGTCTTATTTTTGCGGGCAAGCAATTAGAAGATGGTCGTACACTGTCTGACTACAAC 1979 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || ||||||||||| || | || ||||| || | ||||||| || Sbjct 1978 ATCCAAAAAGAATCTACTTTGCACTTAGTACTTCGTTTAAGAGGTGG 1932 Score = 125 bits (138), Expect = 6e-24 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| |||||| | || || || ||||||| | || |||||| | || Sbjct 790 ATGCAGATCTTTGTTAAGACTCTTACTGGGAAGACCATCACTTTGGAGGTGGAGCCATCC 731 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||||||||| | ||| || ||| ||||| || || ||||| || |||||| Sbjct 730 GACACTATCGAAAATGTTAAGGCTAAGATCCAAGACAAGGAGGGCATTCCCCCAGACCAA 671 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || ||||| || ||||| ||||| |||| |||||| || || || || Sbjct 670 CAGCGTCTCATCTTTGCTGGTAAACAGTTAGAGGATGGCCGCACTCTGTCGGACTATAAC 611 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || ||||||||||| || | |||||||| || Sbjct 610 ATCCAAAAAGAATCTACTTTGCATTTAGTACT 579 Score = 116 bits (128), Expect = 3e-21 Identities = 155/213 (73%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||||||||| ||||| | || || || | || || | || |||||| | ||| Sbjct 1702 ATGCAAATATTTGTCAAGACACTAACAGGCAAGACTATAACTCTGGAGGTGGAGCCATCT 1643 Query 25059 GACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| || || | || || || | ||| || ||||| || ||||| || || || Sbjct 1642 GACACCATTGAAAATGTAAAGGCTAAGATTCA-AGATAAAGAGGGTATTCCCCCAGATCA 1584 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| || |||| ||||| ||||| || ||||||||| |||||| || || ||||| Sbjct 1583 ACAACGTCTTATCTTTGCTGGCAAGCAGCTAGAAGATGGTCGCACCCTGTCTGACTACAA 1524 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || |||||||| || || || |||||||| || Sbjct 1523 CATCCAAAAAGAGTCTACCCTTCATTTAGTACT 1491 Score = 105 bits (116), Expect = 6e-18 Identities = 153/213 (72%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || ||||| || || | || |||||| |||| || | ||||| || | || Sbjct 2615 AATGCAGATCTTTGTGAAAACACTTACGGGTAAAACCATTACTTTGGAAGTTGAACCTTC 2556 Query 25058 TGACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 || ||||| || | || |||| |||| ||| ||||| ||||| ||||| || || Sbjct 2555 CGATACTATTGAA--AATGTAAAAGCCAAAATTCAA-GACAAGGAAGGCATTCCTCCAGA 2499 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||||| || | ||||| || || || ||||| ||||| | |||||| | || || Sbjct 2498 TCAACAACGTTTGATTTTCGCTGGAAAGCAATTGGAAGACGGACGCACTCTTTCTGACTA 2439 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGT 25207 ||||||||||||||||| || || || || || Sbjct 2438 TAATATTCAAAAAGAATCTACTCTTCACTTGGT 2406 Score = 102 bits (112), Expect = 7e-17 Identities = 163/231 (71%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||||||||| || || | || || ||| | || || | ||||| ||| | || Sbjct 1247 AATGCAAATATTTGTCAAAACACTTACTGGAAAAACAATAACTTTGGAAGTTGAGCCATC 1188 Query 25058 TGACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||||| || || | || |||| || | ||| || || ||||| ||||| || || Sbjct 1187 AGACACCATTGA--AAATGTTAAAGCTAAGATTCA-AGATAAGGAAGGAATTCCTCCAGA 1131 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||||| || |||| || || || |||||| | ||||||| ||||| || || || Sbjct 1130 TCAACAACGTCTTATCTTCGCTGGTAAACAACTGGAAGATGGCCGCACCCTGTCTGACTA 1071 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 |||||| || ||||| || || || || || || || | || ||||||| Sbjct 1070 CAATATCCAGAAAGAGTCGACCCTTCACTTGGTACTCCGTCTCCGAGGAGG 1020 Score = 100 bits (110), Expect = 2e-16 Identities = 162/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||||||||| |||| || ||| | |||||| | ||||| || | || Sbjct 1018 ATGCAGATCTTTGTAAAGACACTGACAGGGAAAACTATCACATTAGAAGTTGAACCCTCA 959 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 |||||||| || | || |||| || ||| |||||||| || ||||| || || Sbjct 958 GACACTATTGA--AAATGTTAAAGC-TAAGATCCAAGACAAAGAGGGTATTCCCCCAGAT 902 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 ||||| || | ||||| || ||||| || | || |||| || ||| | || || Sbjct 901 CAACAACGTCTCATTTTCGCTGGCAAGCAGCTGGAGGATGGCCGTACTCTCTCTGACTAT 842 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 |||||||| ||||| ||||| | || || || || | || ||||||| Sbjct 841 AATATTCAGAAAGAGTCCACTTTGCACTTGGTATTACGTTTACGAGGAGG 792 >seq27512 Length=242 Score = 145 bits (160), Expect = 7e-30 Identities = 171/229 (75%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||||||||||||||| |||| || || | |||||| | ||||| ||| | || Sbjct 228 AATGCAAATATTTGTAAAGACACTGACTGGCAAGACTATCACACTGGAAGTTGAGCCCTC 169 Query 25058 TGACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 |||||| ||||| | ||| |||||| ||| || || ||||| ||||| || |||| Sbjct 168 TGACACAATCGAAAATGTTAAGGCAAAAATTCAA-GATAAGGAAGGCATTCCTCCAGACC 110 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 |||| || |||||||||| || || || | || |||| || || | || |||| Sbjct 109 AACAAAGGCTTATTTTTGCTGGAAAGCAGCTTGAGGATGGACGTACACTATCAGACTACA 50 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||||||| |||||||| || |||||||||| || | || ||||| || Sbjct 49 ATATTCAGAAAGAATCTACTTTACATTTAGTACTTCGTCTGAGAGGTGG 1 >seq27511 Length=800 Score = 143 bits (158), Expect = 2e-29 Identities = 172/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| ||||||||||| |||| || ||| | ||||| | |||||||| | || Sbjct 216 AATGCAAATTTTTGTAAAGACACTGACTGGCAAAACTATCACTTTGGAAGTGGAAGCTTC 275 Query 25058 TGACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 ||| || || || | || ||||| | ||| ||||||||||| ||||| ||||||| Sbjct 276 TGATACAATAGAAAATGTTAAGGCAAAGATTCA-AGACAAAGAAGGCATTCCTCCTGACC 334 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 ||||| || |||||||||| || ||||| | ||||||| || || || ||||| | Sbjct 335 AACAGAGGCTTATTTTTGCAGGAAAACAGCTGGAAGATGGACGTACATTGTCAGATTATA 394 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 ||||||| || ||||| || | || || ||||| | || || || |||| Sbjct 395 ATATTCAGAAGGAATCTACTTTGCACTTGGTGCTGCGCCTTAGGGGTGGAA 445 Score = 104 bits (114), Expect = 2e-17 Identities = 163/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| ||||||||||| |||| || || | ||||| | |||||||| | || Sbjct 444 AATGCAAATTTTTGTAAAGACACTGACTGGCAAGACTATCACTTTGGAAGTGGAAGCTTC 503 Query 25058 TGACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 ||| || || || | || || |||| ||| || ||||| || ||||| || || | Sbjct 504 TGATACAATTGAAAATGTTAAGGCGAAAATTCA-GGATAAAGAGGGTATTCCCCCAGATC 562 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 | || | |||||||||| || || || | ||||||| ||||| | || |||| Sbjct 563 AGCAAAGACTTATTTTTGCTGGAAAGCAGCTTGAAGATGGACGCACACTATCTGACTACA 622 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 ||||||| || ||||| || | || | || || |||| ||||| |||| Sbjct 623 ATATTCAGAAGGAATCAACTTTGCACCTGGTACTGCGGCTGAGAGGTGGAA 673 >seq41046 Length=7774 Score = 132 bits (146), Expect = 4e-26 Identities = 176/242 (73%), Gaps = 7/242 (3%) Strand=Plus/Minus Query 24996 ACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCG 25055 ||||||||||| || || ||||| | || |||||| |||| || |||| |||||| | Sbjct 7385 ACAATGCAAATTTTCGTCAAGACCCTTACGGGTAAAACCATTACCCTCGAGGTGGAGGCC 7326 Query 25056 TCTGACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACC 25111 ||||| ||||| || || | |||| |||||| || || ||||| |||||||| Sbjct 7325 TCTGATACTATAGAAAATGTTA--AAAGC-TAAAATCCAAGATAAGGAAGGTATTCCACC 7269 Query 25112 TGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGA 25171 ||||| || || | || ||||| || |||||| ||||||||| || || || || Sbjct 7268 AGACCAGCAACGTTTGATCTTTGCTGGTAAACAACTAGAAGATGGACGTACATTGTCTGA 7209 Query 25172 TTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAAATTA 25231 ||||| |||||||| |||||||| | ||| | ||||| | || | ||||| || || Sbjct 7208 CTACAACATTCAAAAGGAATCCACATTGCATCTTGTGCTTCGACTTCGCGGAGGTAACTA 7149 Query 25232 TT 25233 || Sbjct 7148 TT 7147 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 431864673416645