Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20pachinus_20[genbank_20GCA_5F900068735.1_202017-04-26] 277,083 sequences; 279,264,790 total letters Query= NC_008520.2 Length=132239 Score E Sequences producing significant alignments: (Bits) Value seq15523 138 1e-27 seq28654 131 1e-25 seq27511 109 5e-19 seq76306 98.7 8e-16 seq27512 95.1 1e-14 seq133356 93.3 4e-14 >seq15523 Length=5906 Score = 138 bits (152), Expect = 1e-27 Identities = 168/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 105462 GATTGGCCACTTAGTTTAAAACAAAGGCCAGAGCAATTGGCCGAAGCCGGTTTTTACTAC 105521 || ||||| | ||| | || || | ||| ||| || | |||||||| || || | |||| Sbjct 5824 GACTGGCCTCGCAGTATGAAGCAGAAGCCTGAGGAACTCGCCGAAGCGGGATTCTTCTAC 5765 Query 105522 ACCGGCAAAGGTGATAAAGTCAAATGTTTTTATTGCGACGGCGGCCTTAAGGATTGGGCA 105581 |||||| | ||||| ||| || || || || || |||||||| || ||||| |||| Sbjct 5764 ACCGGCCAGGGTGACAAAACTAAGTGCTTCTACTGTGACGGCGGACTCAAGGACTGGGAG 5705 Query 105582 AACGCCGACGAACCGTGGGAGGAACATGCACGTTGGTTTGATCGCTGTTCGTTCGTAAAA 105641 |||| ||||| ||||||||| | || ||||| ||||| || || || | | ||| | Sbjct 5704 AACGACGACGTGCCGTGGGAGCAGCACGCACGCTGGTTCGACCGGTGCGCCTACGTGCAG 5645 Query 105642 CTGGTCAAAGGACACGACTACGTGCAGCGGGTGATTAGCGAAGCATGCG 105690 ||||||||||| | || ||||| ||| |||||| | ||||| |||| Sbjct 5644 CTGGTCAAAGGCCGAGAGTACGTCCAGAAGGTGATCACGGAAGCGTGCG 5596 >seq28654 Length=3315 Score = 131 bits (144), Expect = 1e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 111184 AAAATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCC 111243 |||||||| || ||||| ||||| | || || ||||||||||| ||||| ||||| Sbjct 2617 AAAATGCAGATCTTTGTGAAAACACTTACGGGTAAAACCATTACTTTGGAAGTTGAACCT 2558 Query 111244 AGCGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGAT 111303 |||| || ||| | |||||| |||||| ||||| |||||| |||| ||| Sbjct 2557 TCCGATACTATTGAAAATGTAAAAGCCAAAATTCAAGACAAGGAAGGCATTCCTCCAGAT 2498 Query 111304 CAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTAT 111363 |||||| | | |||| || || || ||||||||||| ||| | | || ||| Sbjct 2497 CAACAACGTTTGATTTTCGCTGGAAAGCAATTGGAAGACGGACGCACTCTTTCTGACTAT 2438 Query 111364 AATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 ||||| |||||||||||||| || || || || |||||||| || ||||| Sbjct 2437 AATATTCAAAAAGAATCTACTCTTCACTTGGTATTGCGTCTTCGTGGTGG 2388 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 ||||| |||||||| ||||| | || || || ||||||||| ||||| ||||||| Sbjct 1930 ATGCAGATTTTTGTTAAAACCCTAACTGGAAAGACCATTACCCTGGAAGTGGAACCCTCT 1871 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 ||| || ||| | |||||| ||||| |||||||| ||| | || ||||| Sbjct 1870 GATACTATTGAAAATGTAAAAGCTAAAATCCAAGACAAAGAGGGCATCCCACCTGATCAG 1811 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 || | ||||| | ||| || || |||||||||||| | || | | || || || Sbjct 1810 CAGCGTCTTATCTTTGCTGGTAAGCAATTGGAAGATGGTCGCACCCTCTCTGACTACAAC 1751 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 || ||||| || ||||| || ||| |||| |||||||||| ||||| Sbjct 1750 ATCCAAAAGGAGTCTACCCTTCATCTAGTACTGCGTCTGCGAGGTGG 1704 Score = 109 bits (120), Expect = 5e-19 Identities = 107/136 (79%), Gaps = 4/136 (3%) Strand=Plus/Minus Query 111280 GACAAAGAAGGCGTTCCCGTCGATCAACAAAGGCTTATTTATGCGGGCAAACAATTGGAA 111339 |||||||| || ||||| |||||||| |||||||||| ||| || |||||| ||||| Sbjct 2293 GACAAAGAGGGTATTCCCCCAGATCAACAGAGGCTTATTTTTGCTGGAAAACAACTGGAA 2234 Query 111340 GATT--CTAAAACTATGGCCGATTATAATATACAAAAAGAATCTACACTACATTTAGTGT 111397 ||| | | | ||| | ||||||||||| ||||| |||||||| ||||||||||| | Sbjct 2233 GATGGCCGTACATTAT--CTGATTATAATATTCAAAAGGAATCTACCCTACATTTAGTAT 2176 Query 111398 TGCGTCTGCGCGGTGG 111413 |||| || || || || Sbjct 2175 TGCGGCTTCGTGGCGG 2160 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 |||||||| ||||||||||| |||| || || ||||||||| ||||| ||||| Sbjct 1474 ATGCAAATATTTGTCAAAACATTGACTGGAAAGACCATTACCCTGGAAGTAGAACCATCT 1415 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 || | | | | || ||| ||||| || || || ||| | ||| || ||| Sbjct 1414 GACACAATCGAGAATGTCAAAGCTAAAATACAGGATAAGGAGGGCATCCCCCCAGACCAA 1355 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 || | || |||| ||| || || |||||||||||| | ||| || | ||||| ||| Sbjct 1354 CAGCGTCTCATTTTTGCTGGAAAGCAATTGGAAGATGGTCGCACTTTGTCTGATTACAAT 1295 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 || || ||||| || || || || |||||| | ||||| || ||||| Sbjct 1294 ATTCAGAAAGAGTCAACCCTGCACTTAGTGCTTCGTCTCCGTGGTGG 1248 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 |||||||| ||||| ||||| | || || ||||| ||||| | ||| ||| | Sbjct 2158 ATGCAAATCTTTGTTAAAACACTCACTGGAAAAACAATTACTTTAGAAGTTGAAGCTTCT 2099 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 || | ||| | || ||| ||||| |||||||||||| |||| |||||| Sbjct 2098 GACACAATTGAAAATGTGAAAGCTAAAATCCAAGACAAAGAAGGCATTCCTCCGGATCAA 2039 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 ||| | ||||||| ||||||||| ||||| |||||| | || || | || || || Sbjct 2038 CAACGTCTTATTTTTGCGGGCAAGCAATTAGAAGATGGTCGTACACTGTCTGACTACAAC 1979 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 || |||||||||||||| | || ||||| | ||| | | ||||| Sbjct 1978 ATCCAAAAAGAATCTACTTTGCACTTAGTACTTCGTTTAAGAGGTGG 1932 >seq27511 Length=800 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 111186 AATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAG 111245 ||||||||||||||| || || |||| |||||||| || || ||||| |||| | Sbjct 216 AATGCAAATTTTTGTAAAGACACTGACTGGCAAAACTATCACTTTGGAAGTGGAAGCTTC 275 Query 111246 CGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCA 111305 ||| | | | | || || ||| ||| |||||||||||| |||| || || Sbjct 276 TGATACAATAGAAAATGTTAAGGCAAAGATTCAAGACAAAGAAGGCATTCCTCCTGACCA 335 Query 111306 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 111365 ||| |||||||||| ||| || ||||| |||||||| || || | |||||||| Sbjct 336 ACAGAGGCTTATTTTTGCAGGAAAACAGCTGGAAGATGGACGTACATTGTCAGATTATAA 395 Query 111366 TATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 ||| || || |||||||| | || || ||| |||| || | ||||| Sbjct 396 TATTCAGAAGGAATCTACTTTGCACTTGGTGCTGCGCCTTAGGGGTGG 443 >seq76306 Length=316 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 |||||||| || || ||||| | || || |||||||| || ||||| |||| | Sbjct 57 ATGCAAATCTTCGTAAAAACTTTAACTGGGAAAACCATCACATTGGAAGTGGAAGCTTCT 116 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 ||| | | | | ||||| ||| ||| ||||| |||||| |||| |||||| Sbjct 117 GATACAATCGAAAACGTAAAGGCAAAGATTCAAGACAAGGAAGGCATTCCTCCAGATCAA 176 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 ||||| || |||| || || || ||| |||||||| || || | || |||||| Sbjct 177 CAAAGACTGATTTTCGCCGGAAAGCAACTGGAAGATGGGCGCACATTGTCAGACTATAAT 236 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 || || || |||||||| | || ||||| |||||||| | ||||| Sbjct 237 ATCCAGAAGGAATCTACTTTGCACTTAGTTTTGCGTCTAAGGGGTGG 283 >seq27512 Length=242 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 111186 AATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAG 111245 ||||||||| ||||| || || |||| ||||| || || || ||||| || ||| Sbjct 228 AATGCAAATATTTGTAAAGACACTGACTGGCAAGACTATCACACTGGAAGTTGAGCCCTC 169 Query 111246 CGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCA 111305 || | | | | || || ||||||| || || |||||| |||| || || Sbjct 168 TGACACAATCGAAAATGTTAAGGCAAAAATTCAAGATAAGGAAGGCATTCCTCCAGACCA 109 Query 111306 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATT--CTAAAACTATGGCCGATTAT 111363 |||||||||||||| ||| || || || | || ||| | | ||||| | || || Sbjct 108 ACAAAGGCTTATTTTTGCTGGAAAGCAGCTTGAGGATGGACGTACACTAT--CAGACTAC 51 Query 111364 AATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 ||||| || ||||||||||| |||||||||| | |||||| | ||||| Sbjct 50 AATATTCAGAAAGAATCTACTTTACATTTAGTACTTCGTCTGAGAGGTGG 1 >seq133356 Length=434 Score = 93.3 bits (102), Expect = 4e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 105162 AACGGGTTCTACTATTTGGGGCGCGCGGACGAAGTGCGCTGCGCGTTCTGCAAAGTGGAA 105221 || || ||||| ||| |||| |||| || ||||| ||||||||||| || ||||| ||| Sbjct 224 AATGGCTTCTATTATCTGGGCCGCGGCGATGAAGTACGCTGCGCGTTTTGTAAAGTAGAA 165 Query 105222 ATAATGCGCTGGTTGGAGGGCGACGACCCGGCCGTAGATCATAAACGATGGGCGCCACAG 105281 || ||| ||| | | ||||||||| || ||| || || | || |||||||| ||| Sbjct 164 ATTATGAAATGGGTTGCGGGCGACGATCCCGCCAAGGACCACCAGCGCTGGGCGCCTCAG 105 Query 105282 TGCCCGTTTTTGCG 105295 ||||| || |||| Sbjct 104 TGCCCTTTCCTGCG 91 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421611415468600