Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heliconius_20pachinus_20[genbank_20GCA_5F900068735.1_202017-04-26]
277,083 sequences; 279,264,790 total letters
Query= NC_009011.2
Length=131331
Score E
Sequences producing significant alignments: (Bits) Value
seq10526 187 2e-42
seq28654 134 1e-26
seq27511 122 7e-23
seq27512 118 9e-22
seq76306 105 6e-18
seq41046 100 2e-16
>seq10526
Length=5062
Score = 187 bits (206), Expect = 2e-42
Identities = 454/681 (67%), Gaps = 35/681 (5%)
Strand=Plus/Minus
Query 20272 AAAGGAGGCAAATACAACATGACCGTGAAACTTTGCAATGTTGACGGCTGTTCAACAAG- 20330
||||| || | |||| | ||||| ||| | |||||||||| |||||||| ||||
Sbjct 4294 AAAGGTGGAAGATACCAAATGACAGTGGAGCTTTGCAATGAAGACGGCTGCAGTTCAAGT 4235
Query 20331 -----CAGCGCGGTTCAGGTCACCATCGCCGACACCGATGGATCTCATTTAAAACCTTTG 20385
|| || || ||| | ||||| ||||||||| ||||||| ||| ||
Sbjct 4234 GATCCCACCGAAATT---GTCG---TGGCCGATACCGATGGAAGTCATTTACCTCCTCTG 4181
Query 20386 ATTTATGACTACATTG----AAAACAATAAACGTTTCGAG-AAGCGTACCGATAAAATCA 20440
||| |||||| |||| ||||| | ||| || || | | || ||| |
Sbjct 4180 GAATAT----ACATTGGGAGAAAAAAATAAGCCGTTCAAGCAAACATCTGGA-AAAGTTG 4126
Query 20441 TTGCTGCATATTTTGTAGAATGGGGCGTTTATCCTAGACAATTTCCCGTCGACAAGGTAC 20500
| | ||| || || ||||||||||| || |||||||| |||| ||||| || |||
Sbjct 4125 TGGGTGCCTACTTCGTAGAATGGGGTGTCTATCCTAGGAAATTCCCCGTGGATCGTATAC 4066
Query 20501 CCGTTCCCAATTTGTCTCATCTGCTATATGGCTTTGTGCCAATTTGCGGCGGAGATGGTA 20560
| | || ||| | ||||| |||| || |||||| | |||||||||||||| || || |
Sbjct 4065 CTATACCTAATCTTACTCATTTGCTCTACGGCTTTATTCCAATTTGCGGCGGTGACGGCA 4006
Query 20561 TCAACGACGCGTTAAAGTTG-TCCCAGCCGGATAGTTATTTAGCTTTGCAACGTTCGTGC 20619
| || || ||||| | || || | |||| ||| | || || || ||
Sbjct 4005 TTAATGATAGTTTAAAAGAGATCGAAGGC----AGTTTCCAAGCACTACAGCGATCCTGT 3950
Query 20620 GCGGGCCGAGATAATTTTAAAGTTGCCATACACGATCCTTGGGCCGCTCTACAGAAACCA 20679
||||| || | || ||||| | || |||||||| ||||| || |||| ||||||
Sbjct 3949 AGCGGCCGTGAGGACTTCAAAGTCTCAATCCACGATCCATGGGCAGCATTACAAAAACCA 3890
Query 20680 CAAAAAGGAGTATCCTCTTGGAACGAACCGTACAAAGGAAACTTTGGTCAGTTGATGGCA 20739
||||||||| | || || |||||||| || |||||||| |||||||| || || ||| ||
Sbjct 3889 CAAAAAGGATTGTCTTCATGGAACGAGCCCTACAAAGGCAACTTTGGCCAATTAATGTCA 3830
Query 20740 ACGAAACTGGCGTATCCTCATCTTAAAGTGCTACCTTCGATCGGCGGGTGGACTTTATCC 20799
|||| || ||| | | || | || || || || || |||||||| | ||
Sbjct 3829 CTAAAACAAGCCCGCCCTGAATTGAAGATTCTTCCCTCTATTGGTGGGTGGACGCTTGCC 3770
Query 20800 GATCCGTT----TTATCATATGCACGATCCGATCGTACGCCAAGTTTTCATCGATTCTGT 20855
||||| || || | | || ||| | | || | | || | | || ||
Sbjct 3769 GATCCTTTCTTCTTTTTAGTTGACAAATCTAAGAGAACACGA----TTTGTGCAGTCAGT 3714
Query 20856 GGAAGAGTTTTTGTTGACGTGGAAATTCTTTGACGGCGTTGACATAGACTGGGAGTTTCC 20915
| |||||| | | || ||||||||||| || || ||||| || || |||||||| ||
Sbjct 3713 AAAGGAGTTTCTTCTAACATGGAAATTCTTCGATGGTGTTGATATCGATTGGGAGTTCCC 3654
Query 20916 GGGAGGCAAAGGTGCGAATCC 20936
|| ||||||||||| || ||
Sbjct 3653 TGGTGGCAAAGGTGCTAACCC 3633
>seq28654
Length=3315
Score = 134 bits (148), Expect = 1e-26
Identities = 170/231 (74%), Gaps = 2/231 (1%)
Strand=Plus/Plus
Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATC- 114211
||||||||||| || | ||| |||||||||| |||||||| |||||||| || |||||
Sbjct 2157 ATACCGCCACGAAGCCGCAATACTAAATGTAGGGTAGATTCCTTTTGAATATTATAATCA 2216
Query 114212 GCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGG 114271
| | || ||||| |||||| |||||||| ||||| | || || | |||||| || ||
Sbjct 2217 GATAAT-GTACGGCCATCTTCCAGTTGTTTTCCAGCAAAAATAAGCCTCTGTTGATCTGG 2275
Query 114272 AGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTC 114331
||||| || |||||||| |||||| || | | ||| | ||||||| | ||
Sbjct 2276 GGGAATACCCTCTTTGTCTTGGATCTTTGCCTTCACATTTTCGATAGTGTCGGACGGCTC 2335
Query 114332 GACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382
|| || | || | ||||| || || ||||| || ||||| ||||||||
Sbjct 2336 TACCTCTAAAGTGATGGTTTTTCCTGTAAGAGTCTTAACAAAGATCTGCAT 2386
Score = 122 bits (134), Expect = 7e-23
Identities = 165/230 (72%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212
|| || ||||| || | | |||||||| | |||||||||||||| ||||| || ||
Sbjct 561 ATCCCACCACGAAGACGAAGTACTAAATGCAAAGTAGATTCTTTTTGGATGTTATAGTCC 620
Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272
|| ||| || ||| || | ||||||||||| ||||||||||||||||||| ||
Sbjct 621 GACAGAGTGCGGCCATCCTCTAACTGTTTACCAGCAAAGATGAGACGCTGTTGGTCTGGG 680
Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332
|||||||| || ||||| ||||| || | | ||| | ||||||| | ||
Sbjct 681 GGAATGCCCTCCTTGTCTTGGATCTTAGCCTTAACATTTTCGATAGTGTCGGATGGCTCC 740
Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382
|| |||| || | || || || || ||||| || ||||| ||||||||
Sbjct 741 ACCTCCAAAGTGATGGTCTTCCCAGTAAGAGTCTTAACAAAGATCTGCAT 790
Score = 122 bits (134), Expect = 7e-23
Identities = 165/230 (72%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212
||||| || || || | || |||| ||| | ||||| || ||||| |||||||| ||
Sbjct 1701 ATACCACCTCGCAGACGCAGTACTAGATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCA 1760
Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272
| || ||| |||||| | ||| |||||||| |||| |||||||| || || ||
Sbjct 1761 GAGAGGGTGCGACCATCTTCCAATTGCTTACCAGCAAAGATAAGACGCTGCTGATCAGGT 1820
Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332
|| ||||| |||||||| || || ||||| | ||||| || || | || |||
Sbjct 1821 GGGATGCCCTCTTTGTCTTGGATTTTAGCTTTTACATTTTCAATAGTATCAGAGGGTTCC 1880
Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382
|| |||| ||| | || || || || || ||||| ||||||||||||||
Sbjct 1881 ACTTCCAGGGTAATGGTCTTTCCAGTTAGGGTTTTAACAAAAATCTGCAT 1930
Score = 122 bits (134), Expect = 7e-23
Identities = 165/230 (72%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212
|| || ||||| || | ||| || || || | ||||||||||||||||| || || ||
Sbjct 2385 ATTCCACCACGAAGACGCAATACCAAGTGAAGAGTAGATTCTTTTTGAATATTATAGTCA 2444
Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272
| ||| || ||||| | ||| || |||||| | || | ||| ||||| || |||
Sbjct 2445 GAAAGAGTGCGTCCGTCTTCCAATTGCTTTCCAGCGAAAATCAAACGTTGTTGATCTGGA 2504
Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332
||||||||||| ||||| ||| || ||||| | ||||| || |||| | |||
Sbjct 2505 GGAATGCCTTCCTTGTCTTGAATTTTGGCTTTTACATTTTCAATAGTATCGGAAGGTTCA 2564
Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382
|| |||| || | ||||| || || || ||||| ||||| ||||||||
Sbjct 2565 ACTTCCAAAGTAATGGTTTTACCCGTAAGTGTTTTCACAAAGATCTGCAT 2614
Score = 120 bits (132), Expect = 3e-22
Identities = 152/209 (73%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 114174 ACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCA 114233
||||| || | |||||||||||||| |||||||| || || |||||| ||||||
Sbjct 1950 ACTAAGTGCAAAGTAGATTCTTTTTGGATGTTGTAGTCAGACAGTGTACGACCATCTTCT 2009
Query 114234 AGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCA 114293
| ||| || || || | || ||||| ||||| |||||||||||||||||||||||
Sbjct 2010 AATTGCTTGCCCGCAAAAATAAGACGTTGTTGATCCGGAGGAATGCCTTCTTTGTCTTGG 2069
Query 114294 ATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTG 114353
|| || ||| | | ||||| ||||| | | ||| || || | || | |||||
Sbjct 2070 ATTTTAGCTTTCACATTTTCAATTGTGTCAGAAGCTTCAACTTCTAAAGTAATTGTTTTT 2129
Query 114354 CCGGTCAGAGTTTTTACAAAAATCTGCAT 114382
|| || || ||||| ||||| || |||||
Sbjct 2130 CCAGTGAGTGTTTTAACAAAGATTTGCAT 2158
Score = 113 bits (124), Expect = 4e-20
Identities = 163/230 (71%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212
||||| || || || | | || || || | || || ||||| || || ||||| ||
Sbjct 1017 ATACCTCCTCGGAGACGGAGTACCAAGTGAAGGGTCGACTCTTTCTGGATATTGTAGTCA 1076
Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272
|| || || |||||| ||||||||||||||| |||| ||||| ||||| || |||
Sbjct 1077 GACAGGGTGCGGCCATCTTCCAGTTGTTTACCAGCGAAGATAAGACGTTGTTGATCTGGA 1136
Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332
||||| ||||| || || |||||| ||| | | ||||| |||||| | | ||
Sbjct 1137 GGAATTCCTTCCTTATCTTGAATCTTAGCTTTAACATTTTCAATGGTGTCTGATGGCTCA 1196
Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382
|| |||| || | ||||| || || || ||||| ||||| || |||||
Sbjct 1197 ACTTCCAAAGTTATTGTTTTTCCAGTAAGTGTTTTGACAAATATTTGCAT 1246
Score = 100 bits (110), Expect = 2e-16
Identities = 160/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212
|| || ||||| || | | ||||| || | || || ||||| ||||| ||||||||
Sbjct 1245 ATTCCACCACGGAGACGAAGCACTAAGTGCAGGGTTGACTCTTTCTGAATATTGTAATCA 1304
Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272
|| ||| ||| |||||| | ||| || ||||| | ||||||||||||||||| ||
Sbjct 1305 GACAAAGTGCGACCATCTTCCAATTGCTTTCCAGCAAAAATGAGACGCTGTTGGTCTGGG 1364
Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332
|| ||||| || || || || || ||| | | || | ||||| | | |||
Sbjct 1365 GGGATGCCCTCCTTATCCTGTATTTTAGCTTTGACATTCTCGATTGTGTCAGATGGTTCT 1424
Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382
|| |||| ||| | || || || |||| ||||| ||||| || |||||
Sbjct 1425 ACTTCCAGGGTAATGGTCTTTCCAGTCAATGTTTTGACAAATATTTGCAT 1474
>seq27511
Length=800
Score = 122 bits (134), Expect = 7e-23
Identities = 145/197 (74%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245
|||||||| || ||||| || ||||| || ||||| |||||| || ||||| ||
Sbjct 413 GTAGATTCCTTCTGAATATTATAATCTGACAATGTACGTCCATCTTCCAGCTGTTTTCCT 354
Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305
|| | || || | ||||||||| |||||||||||||||||||| ||||||| ||
Sbjct 353 GCAAAAATAAGCCTCTGTTGGTCAGGAGGAATGCCTTCTTTGTCTTGAATCTTTGCCTTA 294
Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365
| | ||| | || || | | ||| || |||| || | |||||||| ||||| ||
Sbjct 293 ACATTTTCTATTGTATCAGAAGCTTCCACTTCCAAAGTGATAGTTTTGCCAGTCAGTGTC 234
Query 114366 TTTACAAAAATCTGCAT 114382
||||||||||| |||||
Sbjct 233 TTTACAAAAATTTGCAT 217
>seq27512
Length=242
Score = 118 bits (130), Expect = 9e-22
Identities = 156/212 (74%), Gaps = 6/212 (3%)
Strand=Plus/Plus
Query 114174 ACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATA--GTACGAGAATCTT 114231
|||||||||| ||||||||||| ||||| ||||| | || ||| ||||| ||| |
Sbjct 19 ACTAAATGTAAAGTAGATTCTTTCTGAATATTGTAGT--CTGATAGTGTACGTCCATCCT 76
Query 114232 CAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGG 114291
|||| || || ||||| | || || | |||||||| |||||||||||||| || ||
Sbjct 77 CAAGCTGCTTTCCAGCAAAAATAAGCCTTTGTTGGTCTGGAGGAATGCCTTCCTTATCTT 136
Query 114292 CAATCTTTTGTTTTAGC-TGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTT 114350
||| ||||| ||| | | ||| | ||||| | || || || |||| || | ||
Sbjct 137 GAAT-TTTTGCCTTAACATTTTCGATTGTGTCAGAGGGCTCAACTTCCAGTGTGATAGTC 195
Query 114351 TTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382
||||| ||||| || |||||||| || |||||
Sbjct 196 TTGCCAGTCAGTGTCTTTACAAATATTTGCAT 227
>seq76306
Length=316
Score = 105 bits (116), Expect = 6e-18
Identities = 162/231 (70%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212
|| || || | ||| | ||||||||| || | |||||||| || || || || || ||
Sbjct 286 ATTCCACCCCTTAGACGCAAAACTAAGTGCAAAGTAGATTCCTTCTGGATATTATAGTCT 227
Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272
|| || || |||||| ||||| || || ||| | || || | ||||| || |||
Sbjct 226 GACAATGTGCGCCCATCTTCCAGTTGCTTTCCGGCGAAAATCAGTCTTTGTTGATCTGGA 167
Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332
||||||||||| ||||| ||||||| |||| | ||| | || || | | |||
Sbjct 166 GGAATGCCTTCCTTGTCTTGAATCTTTGCCTTTACGTTTTCGATTGTATCAGAAGCTTCC 107
Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383
|| |||| || | ||||| || || | ||||||||| || || ||||||
Sbjct 106 ACTTCCAATGTGATGGTTTTCCCAGTTAAAGTTTTTACGAAGATTTGCATG 56
>seq41046
Length=7774
Score = 100 bits (110), Expect = 2e-16
Identities = 161/230 (70%), Gaps = 1/230 (0%)
Strand=Plus/Plus
Query 114154 TACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGC 114213
|||| || || |||| | || | ||| | || ||||| |||||||||||||| ||
Sbjct 7153 TACCTCCGCGAAGTCGAAGCACAAGATGCAATGTGGATTCCTTTTGAATGTTGTAGTCAG 7212
Query 114214 TCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAG 114273
|| ||||| |||||| |||||||||||||| |||| | ||| || ||||| || |
Sbjct 7213 ACAATGTACGTCCATCTTCTAGTTGTTTACCAGCAAAGATCAAACGTTGCTGGTCTGGTG 7272
Query 114274 GAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGC-TGTTCAACGGTGTCGGTGGATTCG 114332
|||| ||||| || || || || ||||| | | ||| | || || | || ||
Sbjct 7273 GAATACCTTCCTTATCTTGGATTTTAGCTTTTAACATTTTCTATAGTATCAGAGGCCTCC 7332
Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382
|| || | ||| | ||||| || || || || || || ||||| |||||
Sbjct 7333 ACCTCGAGGGTAATGGTTTTACCCGTAAGGGTCTTGACGAAAATTTGCAT 7382
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 418715627531796
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |