Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20pachinus_20[genbank_20GCA_5F900068735.1_202017-04-26] 277,083 sequences; 279,264,790 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq10526 187 2e-42 seq28654 134 1e-26 seq27511 122 7e-23 seq27512 118 9e-22 seq76306 105 6e-18 seq41046 100 2e-16 >seq10526 Length=5062 Score = 187 bits (206), Expect = 2e-42 Identities = 454/681 (67%), Gaps = 35/681 (5%) Strand=Plus/Minus Query 20272 AAAGGAGGCAAATACAACATGACCGTGAAACTTTGCAATGTTGACGGCTGTTCAACAAG- 20330 ||||| || | |||| | ||||| ||| | |||||||||| |||||||| |||| Sbjct 4294 AAAGGTGGAAGATACCAAATGACAGTGGAGCTTTGCAATGAAGACGGCTGCAGTTCAAGT 4235 Query 20331 -----CAGCGCGGTTCAGGTCACCATCGCCGACACCGATGGATCTCATTTAAAACCTTTG 20385 || || || ||| | ||||| ||||||||| ||||||| ||| || Sbjct 4234 GATCCCACCGAAATT---GTCG---TGGCCGATACCGATGGAAGTCATTTACCTCCTCTG 4181 Query 20386 ATTTATGACTACATTG----AAAACAATAAACGTTTCGAG-AAGCGTACCGATAAAATCA 20440 ||| |||||| |||| ||||| | ||| || || | | || ||| | Sbjct 4180 GAATAT----ACATTGGGAGAAAAAAATAAGCCGTTCAAGCAAACATCTGGA-AAAGTTG 4126 Query 20441 TTGCTGCATATTTTGTAGAATGGGGCGTTTATCCTAGACAATTTCCCGTCGACAAGGTAC 20500 | | ||| || || ||||||||||| || |||||||| |||| ||||| || ||| Sbjct 4125 TGGGTGCCTACTTCGTAGAATGGGGTGTCTATCCTAGGAAATTCCCCGTGGATCGTATAC 4066 Query 20501 CCGTTCCCAATTTGTCTCATCTGCTATATGGCTTTGTGCCAATTTGCGGCGGAGATGGTA 20560 | | || ||| | ||||| |||| || |||||| | |||||||||||||| || || | Sbjct 4065 CTATACCTAATCTTACTCATTTGCTCTACGGCTTTATTCCAATTTGCGGCGGTGACGGCA 4006 Query 20561 TCAACGACGCGTTAAAGTTG-TCCCAGCCGGATAGTTATTTAGCTTTGCAACGTTCGTGC 20619 | || || ||||| | || || | |||| ||| | || || || || Sbjct 4005 TTAATGATAGTTTAAAAGAGATCGAAGGC----AGTTTCCAAGCACTACAGCGATCCTGT 3950 Query 20620 GCGGGCCGAGATAATTTTAAAGTTGCCATACACGATCCTTGGGCCGCTCTACAGAAACCA 20679 ||||| || | || ||||| | || |||||||| ||||| || |||| |||||| Sbjct 3949 AGCGGCCGTGAGGACTTCAAAGTCTCAATCCACGATCCATGGGCAGCATTACAAAAACCA 3890 Query 20680 CAAAAAGGAGTATCCTCTTGGAACGAACCGTACAAAGGAAACTTTGGTCAGTTGATGGCA 20739 ||||||||| | || || |||||||| || |||||||| |||||||| || || ||| || Sbjct 3889 CAAAAAGGATTGTCTTCATGGAACGAGCCCTACAAAGGCAACTTTGGCCAATTAATGTCA 3830 Query 20740 ACGAAACTGGCGTATCCTCATCTTAAAGTGCTACCTTCGATCGGCGGGTGGACTTTATCC 20799 |||| || ||| | | || | || || || || || |||||||| | || Sbjct 3829 CTAAAACAAGCCCGCCCTGAATTGAAGATTCTTCCCTCTATTGGTGGGTGGACGCTTGCC 3770 Query 20800 GATCCGTT----TTATCATATGCACGATCCGATCGTACGCCAAGTTTTCATCGATTCTGT 20855 ||||| || || | | || ||| | | || | | || | | || || Sbjct 3769 GATCCTTTCTTCTTTTTAGTTGACAAATCTAAGAGAACACGA----TTTGTGCAGTCAGT 3714 Query 20856 GGAAGAGTTTTTGTTGACGTGGAAATTCTTTGACGGCGTTGACATAGACTGGGAGTTTCC 20915 | |||||| | | || ||||||||||| || || ||||| || || |||||||| || Sbjct 3713 AAAGGAGTTTCTTCTAACATGGAAATTCTTCGATGGTGTTGATATCGATTGGGAGTTCCC 3654 Query 20916 GGGAGGCAAAGGTGCGAATCC 20936 || ||||||||||| || || Sbjct 3653 TGGTGGCAAAGGTGCTAACCC 3633 >seq28654 Length=3315 Score = 134 bits (148), Expect = 1e-26 Identities = 170/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATC- 114211 ||||||||||| || | ||| |||||||||| |||||||| |||||||| || ||||| Sbjct 2157 ATACCGCCACGAAGCCGCAATACTAAATGTAGGGTAGATTCCTTTTGAATATTATAATCA 2216 Query 114212 GCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGG 114271 | | || ||||| |||||| |||||||| ||||| | || || | |||||| || || Sbjct 2217 GATAAT-GTACGGCCATCTTCCAGTTGTTTTCCAGCAAAAATAAGCCTCTGTTGATCTGG 2275 Query 114272 AGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTC 114331 ||||| || |||||||| |||||| || | | ||| | ||||||| | || Sbjct 2276 GGGAATACCCTCTTTGTCTTGGATCTTTGCCTTCACATTTTCGATAGTGTCGGACGGCTC 2335 Query 114332 GACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | || | ||||| || || ||||| || ||||| |||||||| Sbjct 2336 TACCTCTAAAGTGATGGTTTTTCCTGTAAGAGTCTTAACAAAGATCTGCAT 2386 Score = 122 bits (134), Expect = 7e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || ||||| || | | |||||||| | |||||||||||||| ||||| || || Sbjct 561 ATCCCACCACGAAGACGAAGTACTAAATGCAAAGTAGATTCTTTTTGGATGTTATAGTCC 620 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || ||| || ||| || | ||||||||||| ||||||||||||||||||| || Sbjct 621 GACAGAGTGCGGCCATCCTCTAACTGTTTACCAGCAAAGATGAGACGCTGTTGGTCTGGG 680 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 |||||||| || ||||| ||||| || | | ||| | ||||||| | || Sbjct 681 GGAATGCCCTCCTTGTCTTGGATCTTAGCCTTAACATTTTCGATAGTGTCGGATGGCTCC 740 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| || | || || || || ||||| || ||||| |||||||| Sbjct 741 ACCTCCAAAGTGATGGTCTTCCCAGTAAGAGTCTTAACAAAGATCTGCAT 790 Score = 122 bits (134), Expect = 7e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| || || || | || |||| ||| | ||||| || ||||| |||||||| || Sbjct 1701 ATACCACCTCGCAGACGCAGTACTAGATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCA 1760 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || ||| |||||| | ||| |||||||| |||| |||||||| || || || Sbjct 1761 GAGAGGGTGCGACCATCTTCCAATTGCTTACCAGCAAAGATAAGACGCTGCTGATCAGGT 1820 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || ||||| |||||||| || || ||||| | ||||| || || | || ||| Sbjct 1821 GGGATGCCCTCTTTGTCTTGGATTTTAGCTTTTACATTTTCAATAGTATCAGAGGGTTCC 1880 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| ||| | || || || || || ||||| |||||||||||||| Sbjct 1881 ACTTCCAGGGTAATGGTCTTTCCAGTTAGGGTTTTAACAAAAATCTGCAT 1930 Score = 122 bits (134), Expect = 7e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || ||||| || | ||| || || || | ||||||||||||||||| || || || Sbjct 2385 ATTCCACCACGAAGACGCAATACCAAGTGAAGAGTAGATTCTTTTTGAATATTATAGTCA 2444 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | ||| || ||||| | ||| || |||||| | || | ||| ||||| || ||| Sbjct 2445 GAAAGAGTGCGTCCGTCTTCCAATTGCTTTCCAGCGAAAATCAAACGTTGTTGATCTGGA 2504 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||||||||| ||||| ||| || ||||| | ||||| || |||| | ||| Sbjct 2505 GGAATGCCTTCCTTGTCTTGAATTTTGGCTTTTACATTTTCAATAGTATCGGAAGGTTCA 2564 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| || | ||||| || || || ||||| ||||| |||||||| Sbjct 2565 ACTTCCAAAGTAATGGTTTTACCCGTAAGTGTTTTCACAAAGATCTGCAT 2614 Score = 120 bits (132), Expect = 3e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 114174 ACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCA 114233 ||||| || | |||||||||||||| |||||||| || || |||||| |||||| Sbjct 1950 ACTAAGTGCAAAGTAGATTCTTTTTGGATGTTGTAGTCAGACAGTGTACGACCATCTTCT 2009 Query 114234 AGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCA 114293 | ||| || || || | || ||||| ||||| ||||||||||||||||||||||| Sbjct 2010 AATTGCTTGCCCGCAAAAATAAGACGTTGTTGATCCGGAGGAATGCCTTCTTTGTCTTGG 2069 Query 114294 ATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTG 114353 || || ||| | | ||||| ||||| | | ||| || || | || | ||||| Sbjct 2070 ATTTTAGCTTTCACATTTTCAATTGTGTCAGAAGCTTCAACTTCTAAAGTAATTGTTTTT 2129 Query 114354 CCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || || ||||| ||||| || ||||| Sbjct 2130 CCAGTGAGTGTTTTAACAAAGATTTGCAT 2158 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| || || || | | || || || | || || ||||| || || ||||| || Sbjct 1017 ATACCTCCTCGGAGACGGAGTACCAAGTGAAGGGTCGACTCTTTCTGGATATTGTAGTCA 1076 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || || || |||||| ||||||||||||||| |||| ||||| ||||| || ||| Sbjct 1077 GACAGGGTGCGGCCATCTTCCAGTTGTTTACCAGCGAAGATAAGACGTTGTTGATCTGGA 1136 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| ||||| || || |||||| ||| | | ||||| |||||| | | || Sbjct 1137 GGAATTCCTTCCTTATCTTGAATCTTAGCTTTAACATTTTCAATGGTGTCTGATGGCTCA 1196 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| || | ||||| || || || ||||| ||||| || ||||| Sbjct 1197 ACTTCCAAAGTTATTGTTTTTCCAGTAAGTGTTTTGACAAATATTTGCAT 1246 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || ||||| || | | ||||| || | || || ||||| ||||| |||||||| Sbjct 1245 ATTCCACCACGGAGACGAAGCACTAAGTGCAGGGTTGACTCTTTCTGAATATTGTAATCA 1304 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || ||| ||| |||||| | ||| || ||||| | ||||||||||||||||| || Sbjct 1305 GACAAAGTGCGACCATCTTCCAATTGCTTTCCAGCAAAAATGAGACGCTGTTGGTCTGGG 1364 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || ||||| || || || || || ||| | | || | ||||| | | ||| Sbjct 1365 GGGATGCCCTCCTTATCCTGTATTTTAGCTTTGACATTCTCGATTGTGTCAGATGGTTCT 1424 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| ||| | || || || |||| ||||| ||||| || ||||| Sbjct 1425 ACTTCCAGGGTAATGGTCTTTCCAGTCAATGTTTTGACAAATATTTGCAT 1474 >seq27511 Length=800 Score = 122 bits (134), Expect = 7e-23 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 |||||||| || ||||| || ||||| || ||||| |||||| || ||||| || Sbjct 413 GTAGATTCCTTCTGAATATTATAATCTGACAATGTACGTCCATCTTCCAGCTGTTTTCCT 354 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || | || || | ||||||||| |||||||||||||||||||| ||||||| || Sbjct 353 GCAAAAATAAGCCTCTGTTGGTCAGGAGGAATGCCTTCTTTGTCTTGAATCTTTGCCTTA 294 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | ||| | || || | | ||| || |||| || | |||||||| ||||| || Sbjct 293 ACATTTTCTATTGTATCAGAAGCTTCCACTTCCAAAGTGATAGTTTTGCCAGTCAGTGTC 234 Query 114366 TTTACAAAAATCTGCAT 114382 ||||||||||| ||||| Sbjct 233 TTTACAAAAATTTGCAT 217 >seq27512 Length=242 Score = 118 bits (130), Expect = 9e-22 Identities = 156/212 (74%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 114174 ACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATA--GTACGAGAATCTT 114231 |||||||||| ||||||||||| ||||| ||||| | || ||| ||||| ||| | Sbjct 19 ACTAAATGTAAAGTAGATTCTTTCTGAATATTGTAGT--CTGATAGTGTACGTCCATCCT 76 Query 114232 CAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGG 114291 |||| || || ||||| | || || | |||||||| |||||||||||||| || || Sbjct 77 CAAGCTGCTTTCCAGCAAAAATAAGCCTTTGTTGGTCTGGAGGAATGCCTTCCTTATCTT 136 Query 114292 CAATCTTTTGTTTTAGC-TGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTT 114350 ||| ||||| ||| | | ||| | ||||| | || || || |||| || | || Sbjct 137 GAAT-TTTTGCCTTAACATTTTCGATTGTGTCAGAGGGCTCAACTTCCAGTGTGATAGTC 195 Query 114351 TTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 ||||| ||||| || |||||||| || ||||| Sbjct 196 TTGCCAGTCAGTGTCTTTACAAATATTTGCAT 227 >seq76306 Length=316 Score = 105 bits (116), Expect = 6e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || || | ||| | ||||||||| || | |||||||| || || || || || || Sbjct 286 ATTCCACCCCTTAGACGCAAAACTAAGTGCAAAGTAGATTCCTTCTGGATATTATAGTCT 227 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || || || |||||| ||||| || || ||| | || || | ||||| || ||| Sbjct 226 GACAATGTGCGCCCATCTTCCAGTTGCTTTCCGGCGAAAATCAGTCTTTGTTGATCTGGA 167 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||||||||| ||||| ||||||| |||| | ||| | || || | | ||| Sbjct 166 GGAATGCCTTCCTTGTCTTGAATCTTTGCCTTTACGTTTTCGATTGTATCAGAAGCTTCC 107 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 || |||| || | ||||| || || | ||||||||| || || |||||| Sbjct 106 ACTTCCAATGTGATGGTTTTCCCAGTTAAAGTTTTTACGAAGATTTGCATG 56 >seq41046 Length=7774 Score = 100 bits (110), Expect = 2e-16 Identities = 161/230 (70%), Gaps = 1/230 (0%) Strand=Plus/Plus Query 114154 TACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGC 114213 |||| || || |||| | || | ||| | || ||||| |||||||||||||| || Sbjct 7153 TACCTCCGCGAAGTCGAAGCACAAGATGCAATGTGGATTCCTTTTGAATGTTGTAGTCAG 7212 Query 114214 TCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAG 114273 || ||||| |||||| |||||||||||||| |||| | ||| || ||||| || | Sbjct 7213 ACAATGTACGTCCATCTTCTAGTTGTTTACCAGCAAAGATCAAACGTTGCTGGTCTGGTG 7272 Query 114274 GAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGC-TGTTCAACGGTGTCGGTGGATTCG 114332 |||| ||||| || || || || ||||| | | ||| | || || | || || Sbjct 7273 GAATACCTTCCTTATCTTGGATTTTAGCTTTTAACATTTTCTATAGTATCAGAGGCCTCC 7332 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | ||| | ||||| || || || || || || ||||| ||||| Sbjct 7333 ACCTCGAGGGTAATGGTTTTACCCGTAAGGGTCTTGACGAAAATTTGCAT 7382 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 418715627531796