Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20pachinus_20[genbank_20GCA_5F900068735.1_202017-04-26] 277,083 sequences; 279,264,790 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq266287 132 9e-26 seq200937 127 4e-24 seq259364 118 2e-21 seq275772 84.2 4e-11 >seq266287 Length=596 Score = 132 bits (146), Expect = 9e-26 Identities = 237/338 (70%), Gaps = 6/338 (2%) Strand=Plus/Plus Query 243874 GAGGTTGAGGGACTGGCTCTGGTCGACGAAGGGCGCC-CGCTCTGCGGCCATGGTGATGA 243932 || |||||| ||||| |||||||| | ||| | |||| || || || || | ||| | || Sbjct 149 GACGTTGAGCGACTGACTCTGGTCAATGAACG-CGCCTCGGTCGGCAGCAA-GGTCAAGA 206 Query 243933 G-GTCCTTCTGAGATATCTCATACGCCGTCTTGTAGATGGGCTTGAGGTGCTCGGGGAAC 243991 | |||||||||| ||||| | | |||||||||| || ||| | ||| |||| | Sbjct 207 ACGACCTTCTGAGAAATCTCCCAGACGGTCTTGTAGACGGCCTTCATGTGTGCGGGTATA 266 Query 243992 CCTTCGATGTTCTGCACCGAGCCCTTGTGGACGATGAGCTGGGTGCGCATGTTATCGTTC 244051 || | ||||||||| | ||||||| |||| | |||| | || | ||| | ||| | | Sbjct 267 CCGTTGATGTTCTGGATTGAGCCCTGGTGGGCAATGATCCGGTTCTTCATCTCATCATCC 326 Query 244052 CACAGGCCCA-AGCGCTCCAGCGCCTCGACCAGGTGCCTGTTCACCACCTGAAACTCTCC 244110 || ||||| | || | ||| ||| || ||| |||||| | ||| ||||| || Sbjct 327 CAGAGGCCGGCATCGA-CGAGCTCCTTGAGCAGCCATGGGTTCACGATCTGGAACTCGCC 385 Query 244111 CGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTCGATGCTCTCCGTGTTGCC 244170 | || ||||||||| ||||| |||| || |||||| | || ||| || || Sbjct 386 GGCCAAGACGCGGCGCGTGTAGATGTTGGACGTGTACGGCTCAAAGCACTCGTTGAATCC 445 Query 244171 CAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACA 244208 || ||||| |||||||| ||||||||||||| || Sbjct 446 AAGAATCTGGCTGGTGCTCGCTGTCGGCATGGGCGCCA 483 >seq200937 Length=824 Score = 127 bits (140), Expect = 4e-24 Identities = 298/442 (67%), Gaps = 17/442 (4%) Strand=Plus/Minus Query 42285 ATCGAGCACCAGGACATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCC 42344 ||| || |||| || |||||| || |||||| || || || |||||| ||| Sbjct 430 ATCAAGTACCACGAAATCTGGGCCGCATACAAGCGTGCTGAGGCGTCGTTCTGGACGGCC 371 Query 42345 GAGGAGATTGACCTGGCCAAGGACACGGCCGGCTGGGA-GTCA--CTGTCTGAGAACGAA 42401 |||||||| |||||| | ||||| | | || |||||| || ||| ||| |||| Sbjct 370 GAGGAGATGGACCTGTCGAAGGATATGCACGACTGGGACAACAAGCTGAATGACGACGAG 311 Query 42402 AAGTTTTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAG 42461 | ||| |||| || | || |||||||| ||| |||| || ||||| ||||| ||| Sbjct 310 CGCTACTTCATCAAGCACGTCCTTGCCTTCTTTGCCACCTCGGATGGCATCGTCAACGAG 251 Query 42462 AACCTGGCCACCAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGC 42521 |||||| | | ||| ||| ||||| | |||| | | | ||||||| Sbjct 250 AACCTGCTCGAGCGCTTCTCGAACGAGGTCC---------AGGC-CCCCGAATCTACGGG 201 Query 42522 TTCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTAC 42581 |||||||| || |||||| | || || ||||| ||| | || || |||| ||| Sbjct 200 TTCCAGATCATGATGGAGAACATCCATTCCGAGGTCTACTCGCTCCTCATCGACACTTAC 141 Query 42582 ATCCTGGATCCCGTC-GAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCAT 42640 |||| || | || | ||||| | |||||| ||| || || ||||| |||||||| Sbjct 140 ATCCGCGA-CTCGACAGAGCGCCAGCATCTGTTCGAGGGTATTGACACGATCCCCTGCAT 82 Query 42641 CAAGAAGAAGGCGGACTGGGCGCTCAACTGGA-TCGAGAGTCCCGACGCAACGTTCGGCG 42699 | || ||||| || ||||||||| |||| | ||| | |||| | ||||| || | Sbjct 81 CCGCAAAAAGGCAGAGTGGGCGCTCCGGTGGATTTCAGA-TGACGACTCGACGTTTGGTG 23 Query 42700 AGAGGCTGGTAGCCTTTACCGC 42721 | |||| | ||||| |||| Sbjct 22 AACGGCTTATGGCCTTCGCCGC 1 >seq259364 Length=501 Score = 118 bits (130), Expect = 2e-21 Identities = 134/177 (76%), Gaps = 6/177 (3%) Strand=Plus/Minus Query 42969 CTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTCGCCGACCATCTC 43028 ||| ||||||||||| |||||| |||||| |||||||| ||| ||||||||||| || Sbjct 459 CTGATCGGCATGAACGCCGACCTTATGTGCCAGTACATCGAGTTCGTCGCCGACCGCCTT 400 Query 43029 CT-GTGCCAGATGGGTCTCAGCCGC--CTCTACAACACGCCGTGCCCCTTCGACTTTATG 43085 || || | | || | | ||| | ||||||| | | | ||| ||||| || ||| Sbjct 399 CTTGTTGCCGTCGG---TAACCCGAAGCACTACAACGCTCAGAACCCGTTCGATTTCATG 343 Query 43086 GAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGCCGACTAC 43142 |||| ||||| | | || |||||||||||||||||||||||||| |||||||| Sbjct 342 GAGATGATCTCCCTCGCCGGAAAGACCAACTTTTTCGAGAAGCGCGTTTCCGACTAC 286 >seq275772 Length=427 Score = 84.2 bits (92), Expect = 4e-11 Identities = 204/305 (67%), Gaps = 8/305 (3%) Strand=Plus/Plus Query 244334 GGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTTACAGCTCTCGTCG 244393 |||||||| | | ||| ||| ||||| || |||| || || | | | | ||| Sbjct 4 GGGCTGCCGGGGAACGTCTCGTACGGACCATCACGCTCCGCGAGTTCAGACGATGCCTCG 63 Query 244394 AGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCCTTGCCGCAG 244453 || ||| ||| ||||| |||||| |||||| ||| | | ||| |||| | || Sbjct 64 AGTGCGCCGTGGTAGAGGGTCTCAAAGATCTGGAGGTTGAGCTTGCGCGCCTC-CGGCGA 122 Query 244454 GTGAAGGGGATGCCC-ATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGATGCCGAT 244512 || || ||| ||| | ||| ||| | ||||| || ||||| || ||||||||||| Sbjct 123 GTCAAAGGGGAGCCGGAGGATCTGGAAAGCATCGGCAAGACCCTGGACACCGATGCCGAT 182 Query 244513 GGGTCTGTGTCGCTTGTTGGA---GCGCATGGCTTCGGGCACGGGGTAAAAGTTGCCGTC 244569 || | ||| ||| |||| || |||| || |||||||| |||||| | || |||| Sbjct 183 CGGGCGGTGACGCATGTTCGACTTGCGC---GCCTCGGGCACAGGGTAATAATTAACGTC 239 Query 244570 GATCACCTTGTTGAGGTTGCGGGTGATCATGCGGACGACGTCGGCCAGCAGCTGAAAGTC 244629 ||| | || || ||| ||||| | | |||| ||| |||| || ||||| Sbjct 240 GATGATGCGATTAAGATTGTAGGTGACAACTTTGGCGACCTCGTGCAGCTTCTCAAAGTT 299 Query 244630 GTACT 244634 ||||| Sbjct 300 GTACT 304 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 941068445768080