Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heliconius_20pachinus_20[genbank_20GCA_5F900068735.1_202017-04-26]
277,083 sequences; 279,264,790 total letters
Query= NC_009234.1
Length=35741
Score E
Sequences producing significant alignments: (Bits) Value
seq125599 127 5e-25
seq56468 127 5e-25
seq268213 89.7 1e-13
>seq125599
Length=907
Score = 127 bits (140), Expect = 5e-25
Identities = 366/558 (66%), Gaps = 16/558 (3%)
Strand=Plus/Minus
Query 3411 ACTTCCTGGGGACGAACGCGCGTACCGCGCAGTCGTATCACGGCAACTTCTATTTCGACG 3470
|||| || || ||||| || || ||||| | ||||||||||||||| || ||||
Sbjct 820 ACTTTCTCGGAACGAATTTTCGCACTGCGCAAGGGCGTCACGGCAACTTCTACTTTGACG 761
Query 3471 AATACTTTTGGGTTCCGAAGTTCCGCGAGTTGAACAAGGTTGCGTCGGGCATGGCGATGC 3530
||| ||||||||||| | ||| ||||||||||| || |||||||| |||
Sbjct 760 AATTCTTTTGGGTTCATAGTTTCGAGGAGTTGAACAAAGTCGCGTCGGGTATGNNNNNNN 701
Query 3531 ACAAGCGCTGGCGCAAGACCT-ACTTCAGCACGCCGTCGAGTGTCACGCACGAGGCGTTC 3589
||||| |||||||||| || |||| | || |
Sbjct 700 NNNNNNNNNNNNNNNNNNNNNNACTTCTCGACGCCGTCGACGATCGCGCATGCCGCCTAT 641
Query 3590 GCGTTCTGGAGCGGCGCGCACGCG-AACCGCGGCCGCGCCGCGGGCGAGCGCATCCAGAT 3648
||| ||||| || | || ||| ||||| | |||||| | ||||||| || ||||
Sbjct 640 CCGTACTGGACGGGTGAGCG-GCGCAACCGGCGGCGCGCCAAAGCCGAGCGCGTCGAGAT 582
Query 3649 CGACACGAGCCACGAGGCGCTCGTGCGCGGCATGTTGTGCGAGGACGCGCAG-TGGCGGC 3707
||| |||||||| ||||| | |||| | | | ||| |||| |||||||
Sbjct 581 CGATGTCAGCCACGACGCGCTGAAGGACGGCGCGCAGGGACCGGAT-CGCATCTGGCGGC 523
Query 3708 AGATCGTGACCGTGCTCGACGCGATGGCGGGCGGCTGCAACCTGTTCGACATCGACGAGC 3767
| ||||| || | ||| || ||| | || ||| |||||||||||||||||||||
Sbjct 522 ATATCGTCACGATCACCGATGCCGAGGCCGCGGGTTGCGACCTGTTCGACATCGACGAGC 463
Query 3768 TGCGCCGCGAATACAGCGCC-GAGGAATTCGCGAACCTGCTGATGTGCCACTTCATCGAC 3826
||||| |||||| ||||| || || || || || || | ||| ||||| |||||
Sbjct 462 TGCGCGACGAATA-TGCGCCAGACGAGTTTGCCAATCTATTCGACTGCGACTTCGTCGAC 404
Query 3827 GATTCGCTGTCGGTGTTCAAGCTGTCGGACCTG---CAACGCTGCATGGTCGACTCGTGG 3883
|| ||||| | |||| | | |||||| || || || || |||||| |
Sbjct 403 GACAGCCTGTCCGCGTTCCGGTTCAACGACCTGATCAAATGCGGC-TG--CGACTCCATG 347
Query 3884 GAGGAATGGGCGGACGACTTTTCGCCGCTGCTGCTGCGTCCGTTCGGTCATCGCGAGGTG 3943
||||| ||| | ||| | | || | || || || |||| ||| | ||| |||
Sbjct 346 GAGGACTGGACCGACTTCAATCCG--GAGGCCGC-ACGCCCGTACGGCGAGCGCCCCGTG 290
Query 3944 TGGGTCGGCTACGATCCG 3961
|||| |||||||||||||
Sbjct 289 TGGGCCGGCTACGATCCG 272
>seq56468
Length=1893
Score = 127 bits (140), Expect = 5e-25
Identities = 247/352 (70%), Gaps = 21/352 (6%)
Strand=Plus/Plus
Query 728 CGATGTTTTCGGCCA-CGCAGCCGCAGCCGAAGTCTTCGACCACGTAGGCGTCGTTCGAC 786
||||||| ||| || | ||||| ||| | ||||||||| || ||||||| ||| |||
Sbjct 123 CGATGTTCTCGATCAGCACAGCCTT-GCCCATGTCTTCGACGACATAGGCGTGGTT-GAC 180
Query 787 GAT-TCGTAGTTCTCGATGCGGTCGCGTTCCGGCACT-TCCTTCAGCGTGCGCCGGCGCG 844
| | |||||||||||||| ||||||| | ||| | |||| | | |||| || |
Sbjct 181 GCTCTCGTAGTTCTCGATCTGGTCGCGCTT-GGCGTTGTCCTCGATCTTGCGACGCTCGG 239
Query 845 CGCCTTCCTGGTAGTAGATCGACAGATTTGACAGCTTCGTGACCATCAGCGCGCGCTTCG 904
||| ||| | |||| |||||| || | ||| | |||| || | |||| ||| |
Sbjct 240 TGCCGATCTGTTCATAGACCGACAGGTTGGCGAGCGTGGTGATCAGGATGGCGCTCTTTG 299
Query 905 GGAAGAACGGCACGCGCACGGCCGGCAGATTGCCGATGCGCTTCTGG-CTCACGATCAGA 963
|||| ||||||||| || || | || | |||||| ||||| | | || | |||
Sbjct 300 GGAACTTCGGCACGCGGACCGCGGTCAAACCGCCGAT---CTTCTTGTCGGAC-AGCAGG 355
Query 964 TCGGC---CGCGAGCCGCTCGGTCGGC-----GCCTGCGTCGCGTTGACGATCGGGAAAT 1015
|| | ||| ||| ||||||| | | ||| || ||||||||||||| |||||
Sbjct 356 ACGTCACGCGCCAGCTGCTCGGTTGCCTTGTCGCC--CGATGCGTTGACGATCGAGAAAT 413
Query 1016 ACTTGTCGTGCAGCAGCTCGCGGCCGCAGATCGCGACGAGGCCCGTGTCTTC 1067
||||||||| | ||| |||||||| ||||||||| ||| | || || ||
Sbjct 414 ACTTGTCGTTGACGAGCGCGCGGCCGACGATCGCGACCAGGTCTGTATCCTC 465
Score = 86.0 bits (94), Expect = 1e-12
Identities = 131/178 (74%), Gaps = 14/178 (8%)
Strand=Plus/Minus
Query 1371 CGCCCATGCGTCGAGCTTGCGATACGGAATCGCCGTGTCGTAGTCGGTCTTCTCGCAGCG 1430
|||||| ||||||||| | || | | | ||||||| |||||||||||||||| ||
Sbjct 1293 CGCCCAGGCGTCGAGCGTCTCGTATCGCACCAGCGTGTCGAAGTCGGTCTTCTCGCAACG 1234
Query 1431 GTAGCG-GTTGCTGTCGAG--CGCCGTCGGGTCGATCGGTTGGCGCGCGG-CCTTC---G 1483
|||||| ||| | |||||| ||||| |||| | || ||| ||||| |||||
Sbjct 1233 GTAGCGCGTTTC-GTCGAGATCGCCG--GGGT--AACG--AGGCTCGCGGTCCTTCACGC 1181
Query 1484 TCGTGTCGGTGCGGCTCGCGATCGGGCCGGACACGGACAGGCCGAGCTTTTCGCCTTC 1541
|||||||||||||||||||||| || |||| | ||||| ||| || |||||
Sbjct 1180 GGGTGTCGGTGCGGCTCGCGATCGTTCCCTTCACGCCAACGCCGACCTTGTCACCTTC 1123
>seq268213
Length=253
Score = 89.7 bits (98), Expect = 1e-13
Identities = 100/131 (76%), Gaps = 2/131 (2%)
Strand=Plus/Plus
Query 3413 TTCCTGGGGACGAACGCGCGTACCGCGCAGTCGTATCACGGCAACTTCTATTTCGACGAA 3472
||||| ||||| || ||||| ||||||||| ||||||||||| ||||||||||||||
Sbjct 106 TTCCTCGGGACCAATGCGCGCACCGCGCAGGGCTATCACGGCAATTTCTATTTCGACGAG 165
Query 3473 TACTTTTGG-GTTCCGAAGTTCCGCGAGTTGAACAAGGTTGCGTCGGGCATGGCGATGCA 3531
| || ||| | || |||| || | |||||||| || | |||||||||||
Sbjct 166 TTTTTCTGGACCTACG-GGTTCGAGGAACTCAACAAGGTCGCCAGCGCGATGGCGATGCA 224
Query 3532 CAAGCGCTGGC 3542
|||||||||||
Sbjct 225 CAAGCGCTGGC 235
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 113873677614738
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |