Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20pachinus_20[genbank_20GCA_5F900068735.1_202017-04-26] 277,083 sequences; 279,264,790 total letters Query= NC_009234.1 Length=35741 Score E Sequences producing significant alignments: (Bits) Value seq125599 127 5e-25 seq56468 127 5e-25 seq268213 89.7 1e-13 >seq125599 Length=907 Score = 127 bits (140), Expect = 5e-25 Identities = 366/558 (66%), Gaps = 16/558 (3%) Strand=Plus/Minus Query 3411 ACTTCCTGGGGACGAACGCGCGTACCGCGCAGTCGTATCACGGCAACTTCTATTTCGACG 3470 |||| || || ||||| || || ||||| | ||||||||||||||| || |||| Sbjct 820 ACTTTCTCGGAACGAATTTTCGCACTGCGCAAGGGCGTCACGGCAACTTCTACTTTGACG 761 Query 3471 AATACTTTTGGGTTCCGAAGTTCCGCGAGTTGAACAAGGTTGCGTCGGGCATGGCGATGC 3530 ||| ||||||||||| | ||| ||||||||||| || |||||||| ||| Sbjct 760 AATTCTTTTGGGTTCATAGTTTCGAGGAGTTGAACAAAGTCGCGTCGGGTATGNNNNNNN 701 Query 3531 ACAAGCGCTGGCGCAAGACCT-ACTTCAGCACGCCGTCGAGTGTCACGCACGAGGCGTTC 3589 ||||| |||||||||| || |||| | || | Sbjct 700 NNNNNNNNNNNNNNNNNNNNNNACTTCTCGACGCCGTCGACGATCGCGCATGCCGCCTAT 641 Query 3590 GCGTTCTGGAGCGGCGCGCACGCG-AACCGCGGCCGCGCCGCGGGCGAGCGCATCCAGAT 3648 ||| ||||| || | || ||| ||||| | |||||| | ||||||| || |||| Sbjct 640 CCGTACTGGACGGGTGAGCG-GCGCAACCGGCGGCGCGCCAAAGCCGAGCGCGTCGAGAT 582 Query 3649 CGACACGAGCCACGAGGCGCTCGTGCGCGGCATGTTGTGCGAGGACGCGCAG-TGGCGGC 3707 ||| |||||||| ||||| | |||| | | | ||| |||| ||||||| Sbjct 581 CGATGTCAGCCACGACGCGCTGAAGGACGGCGCGCAGGGACCGGAT-CGCATCTGGCGGC 523 Query 3708 AGATCGTGACCGTGCTCGACGCGATGGCGGGCGGCTGCAACCTGTTCGACATCGACGAGC 3767 | ||||| || | ||| || ||| | || ||| ||||||||||||||||||||| Sbjct 522 ATATCGTCACGATCACCGATGCCGAGGCCGCGGGTTGCGACCTGTTCGACATCGACGAGC 463 Query 3768 TGCGCCGCGAATACAGCGCC-GAGGAATTCGCGAACCTGCTGATGTGCCACTTCATCGAC 3826 ||||| |||||| ||||| || || || || || || | ||| ||||| ||||| Sbjct 462 TGCGCGACGAATA-TGCGCCAGACGAGTTTGCCAATCTATTCGACTGCGACTTCGTCGAC 404 Query 3827 GATTCGCTGTCGGTGTTCAAGCTGTCGGACCTG---CAACGCTGCATGGTCGACTCGTGG 3883 || ||||| | |||| | | |||||| || || || || |||||| | Sbjct 403 GACAGCCTGTCCGCGTTCCGGTTCAACGACCTGATCAAATGCGGC-TG--CGACTCCATG 347 Query 3884 GAGGAATGGGCGGACGACTTTTCGCCGCTGCTGCTGCGTCCGTTCGGTCATCGCGAGGTG 3943 ||||| ||| | ||| | | || | || || || |||| ||| | ||| ||| Sbjct 346 GAGGACTGGACCGACTTCAATCCG--GAGGCCGC-ACGCCCGTACGGCGAGCGCCCCGTG 290 Query 3944 TGGGTCGGCTACGATCCG 3961 |||| ||||||||||||| Sbjct 289 TGGGCCGGCTACGATCCG 272 >seq56468 Length=1893 Score = 127 bits (140), Expect = 5e-25 Identities = 247/352 (70%), Gaps = 21/352 (6%) Strand=Plus/Plus Query 728 CGATGTTTTCGGCCA-CGCAGCCGCAGCCGAAGTCTTCGACCACGTAGGCGTCGTTCGAC 786 ||||||| ||| || | ||||| ||| | ||||||||| || ||||||| ||| ||| Sbjct 123 CGATGTTCTCGATCAGCACAGCCTT-GCCCATGTCTTCGACGACATAGGCGTGGTT-GAC 180 Query 787 GAT-TCGTAGTTCTCGATGCGGTCGCGTTCCGGCACT-TCCTTCAGCGTGCGCCGGCGCG 844 | | |||||||||||||| ||||||| | ||| | |||| | | |||| || | Sbjct 181 GCTCTCGTAGTTCTCGATCTGGTCGCGCTT-GGCGTTGTCCTCGATCTTGCGACGCTCGG 239 Query 845 CGCCTTCCTGGTAGTAGATCGACAGATTTGACAGCTTCGTGACCATCAGCGCGCGCTTCG 904 ||| ||| | |||| |||||| || | ||| | |||| || | |||| ||| | Sbjct 240 TGCCGATCTGTTCATAGACCGACAGGTTGGCGAGCGTGGTGATCAGGATGGCGCTCTTTG 299 Query 905 GGAAGAACGGCACGCGCACGGCCGGCAGATTGCCGATGCGCTTCTGG-CTCACGATCAGA 963 |||| ||||||||| || || | || | |||||| ||||| | | || | ||| Sbjct 300 GGAACTTCGGCACGCGGACCGCGGTCAAACCGCCGAT---CTTCTTGTCGGAC-AGCAGG 355 Query 964 TCGGC---CGCGAGCCGCTCGGTCGGC-----GCCTGCGTCGCGTTGACGATCGGGAAAT 1015 || | ||| ||| ||||||| | | ||| || ||||||||||||| ||||| Sbjct 356 ACGTCACGCGCCAGCTGCTCGGTTGCCTTGTCGCC--CGATGCGTTGACGATCGAGAAAT 413 Query 1016 ACTTGTCGTGCAGCAGCTCGCGGCCGCAGATCGCGACGAGGCCCGTGTCTTC 1067 ||||||||| | ||| |||||||| ||||||||| ||| | || || || Sbjct 414 ACTTGTCGTTGACGAGCGCGCGGCCGACGATCGCGACCAGGTCTGTATCCTC 465 Score = 86.0 bits (94), Expect = 1e-12 Identities = 131/178 (74%), Gaps = 14/178 (8%) Strand=Plus/Minus Query 1371 CGCCCATGCGTCGAGCTTGCGATACGGAATCGCCGTGTCGTAGTCGGTCTTCTCGCAGCG 1430 |||||| ||||||||| | || | | | ||||||| |||||||||||||||| || Sbjct 1293 CGCCCAGGCGTCGAGCGTCTCGTATCGCACCAGCGTGTCGAAGTCGGTCTTCTCGCAACG 1234 Query 1431 GTAGCG-GTTGCTGTCGAG--CGCCGTCGGGTCGATCGGTTGGCGCGCGG-CCTTC---G 1483 |||||| ||| | |||||| ||||| |||| | || ||| ||||| ||||| Sbjct 1233 GTAGCGCGTTTC-GTCGAGATCGCCG--GGGT--AACG--AGGCTCGCGGTCCTTCACGC 1181 Query 1484 TCGTGTCGGTGCGGCTCGCGATCGGGCCGGACACGGACAGGCCGAGCTTTTCGCCTTC 1541 |||||||||||||||||||||| || |||| | ||||| ||| || ||||| Sbjct 1180 GGGTGTCGGTGCGGCTCGCGATCGTTCCCTTCACGCCAACGCCGACCTTGTCACCTTC 1123 >seq268213 Length=253 Score = 89.7 bits (98), Expect = 1e-13 Identities = 100/131 (76%), Gaps = 2/131 (2%) Strand=Plus/Plus Query 3413 TTCCTGGGGACGAACGCGCGTACCGCGCAGTCGTATCACGGCAACTTCTATTTCGACGAA 3472 ||||| ||||| || ||||| ||||||||| ||||||||||| |||||||||||||| Sbjct 106 TTCCTCGGGACCAATGCGCGCACCGCGCAGGGCTATCACGGCAATTTCTATTTCGACGAG 165 Query 3473 TACTTTTGG-GTTCCGAAGTTCCGCGAGTTGAACAAGGTTGCGTCGGGCATGGCGATGCA 3531 | || ||| | || |||| || | |||||||| || | ||||||||||| Sbjct 166 TTTTTCTGGACCTACG-GGTTCGAGGAACTCAACAAGGTCGCCAGCGCGATGGCGATGCA 224 Query 3532 CAAGCGCTGGC 3542 ||||||||||| Sbjct 225 CAAGCGCTGGC 235 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 113873677614738