Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20pachinus_20[genbank_20GCA_5F900068735.1_202017-04-26] 277,083 sequences; 279,264,790 total letters Query= NC_009236.1 Length=36690 Score E Sequences producing significant alignments: (Bits) Value seq253728 141 2e-29 seq125599 125 2e-24 seq56468 118 2e-22 seq268213 104 5e-18 >seq253728 Length=404 Score = 141 bits (156), Expect = 2e-29 Identities = 236/336 (70%), Gaps = 4/336 (1%) Strand=Plus/Plus Query 3451 GCGGCGCGACGCTGTACTTCCTGGGGACGAACGCGCGCACCGCGCAGTCGTACCACGGCA 3510 ||||| ||| |||| ||||||| || |||||| |||||||||||| | ||||||| Sbjct 63 GCGGC-CGA-GCTGCACTTCCTCGGCACGAACTTTCGCACCGCGCAGGGGCGGCACGGCA 120 Query 3511 ACTTCTACTTCGACGAATACTTTTGGGTTCCGAAGTTCCGCGAGCTGAACAAGGTCGCCT 3570 | |||||||||||||| | ||| ||||||| | ||| ||||||||||||||||||| Sbjct 121 ATTTCTACTTCGACGAGTTCTTCTGGGTTCACAGCTTCGAGGAGCTGAACAAGGTCGCCT 180 Query 3571 CCGGCATGGCGATGCACAAGCGCTGGCGCAAGACTTACTTCAGCACGCCGTCCAGCGTCA 3630 | || ||||||| ||||||| ||||| || || ||||| ||||| || | ||| Sbjct 181 CGGGGATGGCGACGCACAAGAAGTGGCGAAAAACCTACTTTTCGACGCCATCGACCGTGC 240 Query 3631 CGCACGAGGCGTACGCGTTCTGGAGCGGCGCGC-ACGCGAACCGCGGCCGCGCCGCGGGC 3689 |||| || || | | ||||| ||||| || ||| ||||| |||| || Sbjct 241 TGCACCCCGCCTATCCATACTGGACCGGCGAGCGGCGC-AACCGGCGCCGAAAGAAGGAA 299 Query 3690 GAGCGCATCCAGATCGACACGAGCCACGAGGCGCTCGTGCGCGGCATGTTGTGCGAGGAC 3749 || ||| || || | ||| |||||| | ||||| | | |||| | | || ||| Sbjct 300 GATCGCGTCGAGCTGGACGTGAGCCATGCAGCGCTGGCGGACGGCGCGGTCGGCCCCGAC 359 Query 3750 GCGCAGTGGCGGCAGATCGTGACCGTGCTCGATGCG 3785 | ||||| || ||||||| | | | ||| ||| Sbjct 360 CGGATTTGGCGCCACATCGTGAACATCCGCGACGCG 395 >seq125599 Length=907 Score = 125 bits (138), Expect = 2e-24 Identities = 293/440 (67%), Gaps = 11/440 (3%) Strand=Plus/Minus Query 3466 ACTTCCTGGGGACGAACGCGCGCACCGCGCA--GTCGTACCACGGCAACTTCTACTTCGA 3523 |||| || || ||||| ||||| ||||| | ||| ||||||||||||||||| || Sbjct 820 ACTTTCTCGGAACGAATTTTCGCACTGCGCAAGGGCGT--CACGGCAACTTCTACTTTGA 763 Query 3524 CGAATACTTTTGGGTTCCGAAGTTCCGCGAGCTGAACAAGGTCGCCTCCGGCATGGCGAT 3583 ||||| ||||||||||| | ||| ||| ||||||| ||||| || || ||| Sbjct 762 CGAATTCTTTTGGGTTCATAGTTTCGAGGAGTTGAACAAAGTCGCGTCGGGTATGNNNNN 703 Query 3584 GCACAAGCGCTGGCGCAAGACTT-ACTTCAGCACGCCGTCCAGCGTCACGCACGAGGCGT 3642 ||||| |||||||| | || |||| | || | Sbjct 702 NNNNNNNNNNNNNNNNNNNNNNNNACTTCTCGACGCCGTCGACGATCGCGCATGCCGCCT 643 Query 3643 ACGCGTTCTGGAGCGGCGCGCACGCG-AACCGCGGCCGCGCCGCGGGCGAGCGCATCCAG 3701 | ||| ||||| || | || ||| ||||| | |||||| | ||||||| || || Sbjct 642 ATCCGTACTGGACGGGTGAGCG-GCGCAACCGGCGGCGCGCCAAAGCCGAGCGCGTCGAG 584 Query 3702 ATCGACACGAGCCACGAGGCGCTCGTGCGCGGCATGTTGTGCGAGGACGCGCAG-TGGCG 3760 ||||| |||||||| ||||| | |||| | | | ||| |||| ||||| Sbjct 583 ATCGATGTCAGCCACGACGCGCTGAAGGACGGCGCGCAGGGACCGGAT-CGCATCTGGCG 525 Query 3761 GCAGATCGTGACCGTGCTCGATGCGATGGCGGGCGGCTGCGACCTGTTCGACATCGACGA 3820 ||| ||||| || | |||||| ||| | || ||||||||||||||||||||||| Sbjct 524 GCATATCGTCACGATCACCGATGCCGAGGCCGCGGGTTGCGACCTGTTCGACATCGACGA 465 Query 3821 GCTGCGCCGCGAGTACAGCGCC-GAGGAATTCGCGAATCTGCTCATGTGCCAGTTCATCG 3879 ||||||| ||| || ||||| || || || || ||||| || ||| | ||| ||| Sbjct 464 GCTGCGCGACGAATA-TGCGCCAGACGAGTTTGCCAATCTATTCGACTGCGACTTCGTCG 406 Query 3880 ACGATTCGCTGTCGGTGTTC 3899 |||| ||||| | |||| Sbjct 405 ACGACAGCCTGTCCGCGTTC 386 >seq56468 Length=1893 Score = 118 bits (130), Expect = 2e-22 Identities = 245/352 (70%), Gaps = 21/352 (6%) Strand=Plus/Plus Query 783 CGATGTTTTCGGCCA-CGCAGCCGCAACCGAAGTCTTCGACCACGTAGGCGTCGTTCGAC 841 ||||||| ||| || | ||||| || | ||||||||| || ||||||| ||| ||| Sbjct 123 CGATGTTCTCGATCAGCACAGCCTTGCCC-ATGTCTTCGACGACATAGGCGTGGTT-GAC 180 Query 842 GAT-TCGTAGTTCTCGATGCGGTCGCGTTCCGGCACT-TCCTTCAGCGTGCGCCGGCGCG 899 | | |||||||||||||| ||||||| | ||| | |||| | | |||| || | Sbjct 181 GCTCTCGTAGTTCTCGATCTGGTCGCGCTT-GGCGTTGTCCTCGATCTTGCGACGCTCGG 239 Query 900 CGCCTTCCTGGTAGTAGATCGACAGATTTGACAGCTTCGTGACCATCAGCGCGCGCTTCG 959 ||| ||| | |||| |||||| || | ||| | |||| || | |||| ||| | Sbjct 240 TGCCGATCTGTTCATAGACCGACAGGTTGGCGAGCGTGGTGATCAGGATGGCGCTCTTTG 299 Query 960 GGAAGAACGGCACGCGCACGGCCGGCAGATTGCCGATGCGCTTCTGG-CTCACGATCAGA 1018 |||| ||||||||| || || | || | |||||| ||||| | | || | ||| Sbjct 300 GGAACTTCGGCACGCGGACCGCGGTCAAACCGCCGAT---CTTCTTGTCGGAC-AGCAGG 355 Query 1019 TCGGC---CGCGAGCCGCTCGGTCGGC-----GCCTGCGTCGCGTTGACGATCGGGAAAT 1070 || | ||| ||| ||||||| | | ||| || ||||||||||||| ||||| Sbjct 356 ACGTCACGCGCCAGCTGCTCGGTTGCCTTGTCGCC--CGATGCGTTGACGATCGAGAAAT 413 Query 1071 ACTTGTCGTGCAGCAGCTCGCGGCCGCAGATCACGACGAGGCCCGTGTCTTC 1122 ||||||||| | ||| |||||||| |||| |||| ||| | || || || Sbjct 414 ACTTGTCGTTGACGAGCGCGCGGCCGACGATCGCGACCAGGTCTGTATCCTC 465 Score = 80.6 bits (88), Expect = 6e-11 Identities = 110/145 (76%), Gaps = 14/145 (10%) Strand=Plus/Minus Query 1459 CGTGTCGTAGTCGGTCTTCTCGCAGCGGTAGCG-GTTGCTGTCGAG--CGCCGTCGGGTC 1515 ||||||| |||||||||||||||| |||||||| ||| | |||||| ||||| |||| Sbjct 1260 CGTGTCGAAGTCGGTCTTCTCGCAACGGTAGCGCGTTTC-GTCGAGATCGCCG--GGGT- 1205 Query 1516 GATCGGTTGGCGCGCGG-CCTTC---GTCGTGTCGGTGCGGCTCGCGATCGGGCCGGACA 1571 | || ||| ||||| ||||| |||||||||||||||||||||| || || Sbjct 1204 -AACG--AGGCTCGCGGTCCTTCACGCGGGTGTCGGTGCGGCTCGCGATCGTTCCCTTCA 1148 Query 1572 CGGACAGGCCGAGCTTTTCGCCTTC 1596 || | ||||| ||| || ||||| Sbjct 1147 CGCCAACGCCGACCTTGTCACCTTC 1123 >seq268213 Length=253 Score = 104 bits (114), Expect = 5e-18 Identities = 103/131 (79%), Gaps = 2/131 (2%) Strand=Plus/Plus Query 3468 TTCCTGGGGACGAACGCGCGCACCGCGCAGTCGTACCACGGCAACTTCTACTTCGACGAA 3527 ||||| ||||| || ||||||||||||||| || |||||||| ||||| |||||||| Sbjct 106 TTCCTCGGGACCAATGCGCGCACCGCGCAGGGCTATCACGGCAATTTCTATTTCGACGAG 165 Query 3528 TACTTTTGG-GTTCCGAAGTTCCGCGAGCTGAACAAGGTCGCCTCCGGCATGGCGATGCA 3586 | || ||| | || |||| || || |||||||||||| || ||||||||||| Sbjct 166 TTTTTCTGGACCTACG-GGTTCGAGGAACTCAACAAGGTCGCCAGCGCGATGGCGATGCA 224 Query 3587 CAAGCGCTGGC 3597 ||||||||||| Sbjct 225 CAAGCGCTGGC 235 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 116900485447592