Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heliconius_20pachinus_20[genbank_20GCA_5F900068735.1_202017-04-26]
277,083 sequences; 279,264,790 total letters
Query= NC_009236.1
Length=36690
Score E
Sequences producing significant alignments: (Bits) Value
seq253728 141 2e-29
seq125599 125 2e-24
seq56468 118 2e-22
seq268213 104 5e-18
>seq253728
Length=404
Score = 141 bits (156), Expect = 2e-29
Identities = 236/336 (70%), Gaps = 4/336 (1%)
Strand=Plus/Plus
Query 3451 GCGGCGCGACGCTGTACTTCCTGGGGACGAACGCGCGCACCGCGCAGTCGTACCACGGCA 3510
||||| ||| |||| ||||||| || |||||| |||||||||||| | |||||||
Sbjct 63 GCGGC-CGA-GCTGCACTTCCTCGGCACGAACTTTCGCACCGCGCAGGGGCGGCACGGCA 120
Query 3511 ACTTCTACTTCGACGAATACTTTTGGGTTCCGAAGTTCCGCGAGCTGAACAAGGTCGCCT 3570
| |||||||||||||| | ||| ||||||| | ||| |||||||||||||||||||
Sbjct 121 ATTTCTACTTCGACGAGTTCTTCTGGGTTCACAGCTTCGAGGAGCTGAACAAGGTCGCCT 180
Query 3571 CCGGCATGGCGATGCACAAGCGCTGGCGCAAGACTTACTTCAGCACGCCGTCCAGCGTCA 3630
| || ||||||| ||||||| ||||| || || ||||| ||||| || | |||
Sbjct 181 CGGGGATGGCGACGCACAAGAAGTGGCGAAAAACCTACTTTTCGACGCCATCGACCGTGC 240
Query 3631 CGCACGAGGCGTACGCGTTCTGGAGCGGCGCGC-ACGCGAACCGCGGCCGCGCCGCGGGC 3689
|||| || || | | ||||| ||||| || ||| ||||| |||| ||
Sbjct 241 TGCACCCCGCCTATCCATACTGGACCGGCGAGCGGCGC-AACCGGCGCCGAAAGAAGGAA 299
Query 3690 GAGCGCATCCAGATCGACACGAGCCACGAGGCGCTCGTGCGCGGCATGTTGTGCGAGGAC 3749
|| ||| || || | ||| |||||| | ||||| | | |||| | | || |||
Sbjct 300 GATCGCGTCGAGCTGGACGTGAGCCATGCAGCGCTGGCGGACGGCGCGGTCGGCCCCGAC 359
Query 3750 GCGCAGTGGCGGCAGATCGTGACCGTGCTCGATGCG 3785
| ||||| || ||||||| | | | ||| |||
Sbjct 360 CGGATTTGGCGCCACATCGTGAACATCCGCGACGCG 395
>seq125599
Length=907
Score = 125 bits (138), Expect = 2e-24
Identities = 293/440 (67%), Gaps = 11/440 (3%)
Strand=Plus/Minus
Query 3466 ACTTCCTGGGGACGAACGCGCGCACCGCGCA--GTCGTACCACGGCAACTTCTACTTCGA 3523
|||| || || ||||| ||||| ||||| | ||| ||||||||||||||||| ||
Sbjct 820 ACTTTCTCGGAACGAATTTTCGCACTGCGCAAGGGCGT--CACGGCAACTTCTACTTTGA 763
Query 3524 CGAATACTTTTGGGTTCCGAAGTTCCGCGAGCTGAACAAGGTCGCCTCCGGCATGGCGAT 3583
||||| ||||||||||| | ||| ||| ||||||| ||||| || || |||
Sbjct 762 CGAATTCTTTTGGGTTCATAGTTTCGAGGAGTTGAACAAAGTCGCGTCGGGTATGNNNNN 703
Query 3584 GCACAAGCGCTGGCGCAAGACTT-ACTTCAGCACGCCGTCCAGCGTCACGCACGAGGCGT 3642
||||| |||||||| | || |||| | || |
Sbjct 702 NNNNNNNNNNNNNNNNNNNNNNNNACTTCTCGACGCCGTCGACGATCGCGCATGCCGCCT 643
Query 3643 ACGCGTTCTGGAGCGGCGCGCACGCG-AACCGCGGCCGCGCCGCGGGCGAGCGCATCCAG 3701
| ||| ||||| || | || ||| ||||| | |||||| | ||||||| || ||
Sbjct 642 ATCCGTACTGGACGGGTGAGCG-GCGCAACCGGCGGCGCGCCAAAGCCGAGCGCGTCGAG 584
Query 3702 ATCGACACGAGCCACGAGGCGCTCGTGCGCGGCATGTTGTGCGAGGACGCGCAG-TGGCG 3760
||||| |||||||| ||||| | |||| | | | ||| |||| |||||
Sbjct 583 ATCGATGTCAGCCACGACGCGCTGAAGGACGGCGCGCAGGGACCGGAT-CGCATCTGGCG 525
Query 3761 GCAGATCGTGACCGTGCTCGATGCGATGGCGGGCGGCTGCGACCTGTTCGACATCGACGA 3820
||| ||||| || | |||||| ||| | || |||||||||||||||||||||||
Sbjct 524 GCATATCGTCACGATCACCGATGCCGAGGCCGCGGGTTGCGACCTGTTCGACATCGACGA 465
Query 3821 GCTGCGCCGCGAGTACAGCGCC-GAGGAATTCGCGAATCTGCTCATGTGCCAGTTCATCG 3879
||||||| ||| || ||||| || || || || ||||| || ||| | ||| |||
Sbjct 464 GCTGCGCGACGAATA-TGCGCCAGACGAGTTTGCCAATCTATTCGACTGCGACTTCGTCG 406
Query 3880 ACGATTCGCTGTCGGTGTTC 3899
|||| ||||| | ||||
Sbjct 405 ACGACAGCCTGTCCGCGTTC 386
>seq56468
Length=1893
Score = 118 bits (130), Expect = 2e-22
Identities = 245/352 (70%), Gaps = 21/352 (6%)
Strand=Plus/Plus
Query 783 CGATGTTTTCGGCCA-CGCAGCCGCAACCGAAGTCTTCGACCACGTAGGCGTCGTTCGAC 841
||||||| ||| || | ||||| || | ||||||||| || ||||||| ||| |||
Sbjct 123 CGATGTTCTCGATCAGCACAGCCTTGCCC-ATGTCTTCGACGACATAGGCGTGGTT-GAC 180
Query 842 GAT-TCGTAGTTCTCGATGCGGTCGCGTTCCGGCACT-TCCTTCAGCGTGCGCCGGCGCG 899
| | |||||||||||||| ||||||| | ||| | |||| | | |||| || |
Sbjct 181 GCTCTCGTAGTTCTCGATCTGGTCGCGCTT-GGCGTTGTCCTCGATCTTGCGACGCTCGG 239
Query 900 CGCCTTCCTGGTAGTAGATCGACAGATTTGACAGCTTCGTGACCATCAGCGCGCGCTTCG 959
||| ||| | |||| |||||| || | ||| | |||| || | |||| ||| |
Sbjct 240 TGCCGATCTGTTCATAGACCGACAGGTTGGCGAGCGTGGTGATCAGGATGGCGCTCTTTG 299
Query 960 GGAAGAACGGCACGCGCACGGCCGGCAGATTGCCGATGCGCTTCTGG-CTCACGATCAGA 1018
|||| ||||||||| || || | || | |||||| ||||| | | || | |||
Sbjct 300 GGAACTTCGGCACGCGGACCGCGGTCAAACCGCCGAT---CTTCTTGTCGGAC-AGCAGG 355
Query 1019 TCGGC---CGCGAGCCGCTCGGTCGGC-----GCCTGCGTCGCGTTGACGATCGGGAAAT 1070
|| | ||| ||| ||||||| | | ||| || ||||||||||||| |||||
Sbjct 356 ACGTCACGCGCCAGCTGCTCGGTTGCCTTGTCGCC--CGATGCGTTGACGATCGAGAAAT 413
Query 1071 ACTTGTCGTGCAGCAGCTCGCGGCCGCAGATCACGACGAGGCCCGTGTCTTC 1122
||||||||| | ||| |||||||| |||| |||| ||| | || || ||
Sbjct 414 ACTTGTCGTTGACGAGCGCGCGGCCGACGATCGCGACCAGGTCTGTATCCTC 465
Score = 80.6 bits (88), Expect = 6e-11
Identities = 110/145 (76%), Gaps = 14/145 (10%)
Strand=Plus/Minus
Query 1459 CGTGTCGTAGTCGGTCTTCTCGCAGCGGTAGCG-GTTGCTGTCGAG--CGCCGTCGGGTC 1515
||||||| |||||||||||||||| |||||||| ||| | |||||| ||||| ||||
Sbjct 1260 CGTGTCGAAGTCGGTCTTCTCGCAACGGTAGCGCGTTTC-GTCGAGATCGCCG--GGGT- 1205
Query 1516 GATCGGTTGGCGCGCGG-CCTTC---GTCGTGTCGGTGCGGCTCGCGATCGGGCCGGACA 1571
| || ||| ||||| ||||| |||||||||||||||||||||| || ||
Sbjct 1204 -AACG--AGGCTCGCGGTCCTTCACGCGGGTGTCGGTGCGGCTCGCGATCGTTCCCTTCA 1148
Query 1572 CGGACAGGCCGAGCTTTTCGCCTTC 1596
|| | ||||| ||| || |||||
Sbjct 1147 CGCCAACGCCGACCTTGTCACCTTC 1123
>seq268213
Length=253
Score = 104 bits (114), Expect = 5e-18
Identities = 103/131 (79%), Gaps = 2/131 (2%)
Strand=Plus/Plus
Query 3468 TTCCTGGGGACGAACGCGCGCACCGCGCAGTCGTACCACGGCAACTTCTACTTCGACGAA 3527
||||| ||||| || ||||||||||||||| || |||||||| ||||| ||||||||
Sbjct 106 TTCCTCGGGACCAATGCGCGCACCGCGCAGGGCTATCACGGCAATTTCTATTTCGACGAG 165
Query 3528 TACTTTTGG-GTTCCGAAGTTCCGCGAGCTGAACAAGGTCGCCTCCGGCATGGCGATGCA 3586
| || ||| | || |||| || || |||||||||||| || |||||||||||
Sbjct 166 TTTTTCTGGACCTACG-GGTTCGAGGAACTCAACAAGGTCGCCAGCGCGATGGCGATGCA 224
Query 3587 CAAGCGCTGGC 3597
|||||||||||
Sbjct 225 CAAGCGCTGGC 235
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 116900485447592
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |