Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heliconius_20pachinus_20[genbank_20GCA_5F900068735.1_202017-04-26]
277,083 sequences; 279,264,790 total letters
Query= NC_009382.1
Length=38760
Score E
Sequences producing significant alignments: (Bits) Value
seq253728 158 3e-34
seq125599 102 2e-17
seq56468 89.7 1e-13
seq268213 84.2 5e-12
>seq253728
Length=404
Score = 158 bits (174), Expect = 3e-34
Identities = 221/308 (72%), Gaps = 4/308 (1%)
Strand=Plus/Minus
Query 4766 TCACGATTTGGCGCCACTGGCCGTCCGCGCAGCGCATGCCGTCGCGAAGCGCGGCGTGGC 4825
||||||| |||||||| | ||| | || | | |||||| ||||| || ||||
Sbjct 381 TCACGATGTGGCGCCAAATCCGGTCGGGGCCGACCGCGCCGTCCGCCAGCGCTGCATGGC 322
Query 4826 TCAGGTCGAGCTTGATCTGTTTGTCCTTGGCCTT--GCCGCGGTTGAACAGTGCGCCGGA 4883
||| ||| |||| || | | ||||| | || || |||||| | | ||||||
Sbjct 321 TCACGTCCAGCTCGACGCGATCTTCCTT--CTTTCGGCGCCGGTTGCGCCGCTCGCCGGT 264
Query 4884 CCAGAACGGATAGGCCTCATGCGACAAGCTGGACGGCGTGGAGAAGTAGGTCTGACGCCA 4943
|||| | |||||||| ||| || | | || ||||| || |||||||| | |||||
Sbjct 263 CCAGTATGGATAGGCGGGGTGCAGCACGGTCGATGGCGTCGAAAAGTAGGTTTTTCGCCA 204
Query 4944 GTGCTTGTGGATCGCCATGCCGGAGGCGACCTTGCGCAGTTCCTGGAAGCGCGGCACCCA 5003
| |||||| ||||||| || |||||||||||| ||| |||| ||||| | |||||
Sbjct 203 CTTCTTGTGCGTCGCCATCCCCGAGGCGACCTTGTTCAGCTCCTCGAAGCTGTGAACCCA 144
Query 5004 GAAGTATTCATCGAAGTACAGGTTGCCGTGATACGACTGCGCGGTGCGGGCGTTCGTGCC 5063
|||| | || |||||||| | |||||||| | |||||||||||| |||||||||
Sbjct 143 GAAGAACTCGTCGAAGTAGAAATTGCCGTGCCGCCCCTGCGCGGTGCGAAAGTTCGTGCC 84
Query 5064 GAGAAAGT 5071
||| ||||
Sbjct 83 GAGGAAGT 76
>seq125599
Length=907
Score = 102 bits (112), Expect = 2e-17
Identities = 360/556 (65%), Gaps = 17/556 (3%)
Strand=Plus/Plus
Query 4525 GGGTCGTAGCCGACCCACACCGGCCGGTTGCCGAACGGCCGTGGCGCGAACGGCCGGAAG 4584
|| ||||||||| ||||||| || || | |||| |||| |||| || ||| ||||
Sbjct 273 GGATCGTAGCCGGCCCACACGGGGCGCTCGCCGTACGGGCGTGCGGCCTCCGGATTGAAG 332
Query 4585 TCTTCCCATACCTCCCAACTGTCCACCATCCCGCGCATGAGCA--TCGC-GAGCGGAAAC 4641
|| ||| ||||| ||| || || || ||| || ||| || | | |||
Sbjct 333 TCGGTCCAGTCCTCCATGGAGTCG--CAGCC-GCATTTGATCAGGTCGTTGAACCGGAAC 389
Query 4642 ACCGACGCGTTGTCGTCGATGAATACGCACATGAGCAGGTTGGCGAAATCGAGTT-CGCT 4700
| ||| | ||||||||| ||| |||| || || ||||| || ||| | |||
Sbjct 390 GCGGACAGGCTGTCGTCGACGAAGTCGCAGTCGAATAGATTGGCAAACTCGTCTGGCGCA 449
Query 4701 GTACTCCAGGCGCAGCTGGTCGAGGTCGAACAGGTTGC-AGCCGCCGCGGAGCGCATCCT 4759
|| || |||||||| ||||| ||||||||||| || | |||| || | |||||
Sbjct 450 -TATTCGTCGCGCAGCTCGTCGATGTCGAACAGGTCGCAACCCGCGGCCTCG-GCATCGG 507
Query 4760 CCACCGTCACGATTTGGCGCCACTGGCCGTCCG--CGCAGCGCATGCCGTCGCGAAGCGC 4817
| ||| ||||| || ||||| || |||| | | |||| |||||| |||||
Sbjct 508 TGATCGTGACGATATGCCGCCAGATGCGATCCGGTCCCTGCGC--GCCGTCCTTCAGCGC 565
Query 4818 GGCGTGGCTCAGGTCGAGCTTGATCTGTTTGTCCTTGGCCTTGCCG-CGGTTGAACAGTG 4876
| ||||||| | |||| || || | | | | |||| | |||| |||||| | |
Sbjct 566 GTCGTGGCTGACATCGATCTCGACGCGCTCGGCTTTGG-CGCGCCGCCGGTTGCGCCGCT 624
Query 4877 CGCCGGACCAGAACGGATAGGCCTCATGCGACAAGCTGGACGGCGTGGAGAAGT-AGGTC 4935
| || | |||| |||||||||| |||||| | | |||||||| |||||||
Sbjct 625 CACCCGTCCAGTACGGATAGGCGGCATGCGCGATCGTCGACGGCGTCGAGAAGTNNNNNN 684
Query 4936 TGACGCCAGTGCTTGTGGATCGCCATGCCGGAGGCGACCTTGCGCAGTTCCTGGAAGCGC 4995
||| || || ||||| ||| || |||| ||| |
Sbjct 685 NNNNNNNNNNNNNNNNNNNNNNNCATACCCGACGCGACTTTGTTCAACTCCTCGAAACTA 744
Query 4996 GGCACCCAGAAGTATTCATCGAAGTACAGGTTGCCGTGATACGACTGCGCGGTGCGGGCG 5055
| ||||| ||| |||| || ||||| | |||||||||| | ||||| |||||
Sbjct 745 TGAACCCAAAAGAATTCGTCAAAGTAGAAGTTGCCGTGACGCCCTTGCGCAGTGCGAAAA 804
Query 5056 TTCGTGCCGAGAAAGT 5071
||||| ||||||||||
Sbjct 805 TTCGTTCCGAGAAAGT 820
>seq56468
Length=1893
Score = 89.7 bits (98), Expect = 1e-13
Identities = 120/163 (74%), Gaps = 8/163 (5%)
Strand=Plus/Minus
Query 7183 CGACTTCCAGACTCGCATCCGCGACGCCATCATCAAGCGCCA-GGCGCTGGACCGCATCA 7241
||| |||||||| | | ||||| || ||||||| |||||| ||| | ||| |||||
Sbjct 805 CGATTTCCAGACCCTGCTGCGCGATGCGATCATCA-GCGCCAAGGCCGTCGACATCATCA 747
Query 7242 TGATCGGCTTCAACGGTGTGAGCCGTGCC---GCTACGTCGGACCGGGTGGCCAACCCGA 7298
||||||||||||||| |||| ||| | ||| | ||| ||| ||| | |||
Sbjct 746 CGATCGGCTTCAACGGCGTGAAGGTAGCCAAGGATACCT---ACCCGGTCGCCTATCCGC 690
Query 7299 TGCTGCAGGACGTGAACAAGGGCTGGCTGCAGAACCTGCGTGA 7341
| || |||||||| |||||||||||||| ||| || | || ||
Sbjct 689 TCCTTCAGGACGTCAACAAGGGCTGGCTCCAGCACATCCGCGA 647
>seq268213
Length=253
Score = 84.2 bits (92), Expect = 5e-12
Identities = 106/146 (73%), Gaps = 0/146 (0%)
Strand=Plus/Minus
Query 4924 GAGAAGTAGGTCTGACGCCAGTGCTTGTGGATCGCCATGCCGGAGGCGACCTTGCGCAGT 4983
||||| || || | ||||| ||||||| |||||||| || |||||||||| |||
Sbjct 251 GAGAAATACGTGCGGGGCCAGCGCTTGTGCATCGCCATCGCGCTGGCGACCTTGTTGAGT 192
Query 4984 TCCTGGAAGCGCGGCACCCAGAAGTATTCATCGAAGTACAGGTTGCCGTGATACGACTGC 5043
|||| ||| | |||||| | || ||||| || | ||||||||||| ||||
Sbjct 191 TCCTCGAACCCGTAGGTCCAGAAAAACTCGTCGAAATAGAAATTGCCGTGATAGCCCTGC 132
Query 5044 GCGGTGCGGGCGTTCGTGCCGAGAAA 5069
|||||||| || || || ||||| ||
Sbjct 131 GCGGTGCGCGCATTGGTCCCGAGGAA 106
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 123502690098812
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |