Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20pachinus_20[genbank_20GCA_5F900068735.1_202017-04-26] 277,083 sequences; 279,264,790 total letters Query= NC_009382.1 Length=38760 Score E Sequences producing significant alignments: (Bits) Value seq253728 158 3e-34 seq125599 102 2e-17 seq56468 89.7 1e-13 seq268213 84.2 5e-12 >seq253728 Length=404 Score = 158 bits (174), Expect = 3e-34 Identities = 221/308 (72%), Gaps = 4/308 (1%) Strand=Plus/Minus Query 4766 TCACGATTTGGCGCCACTGGCCGTCCGCGCAGCGCATGCCGTCGCGAAGCGCGGCGTGGC 4825 ||||||| |||||||| | ||| | || | | |||||| ||||| || |||| Sbjct 381 TCACGATGTGGCGCCAAATCCGGTCGGGGCCGACCGCGCCGTCCGCCAGCGCTGCATGGC 322 Query 4826 TCAGGTCGAGCTTGATCTGTTTGTCCTTGGCCTT--GCCGCGGTTGAACAGTGCGCCGGA 4883 ||| ||| |||| || | | ||||| | || || |||||| | | |||||| Sbjct 321 TCACGTCCAGCTCGACGCGATCTTCCTT--CTTTCGGCGCCGGTTGCGCCGCTCGCCGGT 264 Query 4884 CCAGAACGGATAGGCCTCATGCGACAAGCTGGACGGCGTGGAGAAGTAGGTCTGACGCCA 4943 |||| | |||||||| ||| || | | || ||||| || |||||||| | ||||| Sbjct 263 CCAGTATGGATAGGCGGGGTGCAGCACGGTCGATGGCGTCGAAAAGTAGGTTTTTCGCCA 204 Query 4944 GTGCTTGTGGATCGCCATGCCGGAGGCGACCTTGCGCAGTTCCTGGAAGCGCGGCACCCA 5003 | |||||| ||||||| || |||||||||||| ||| |||| ||||| | ||||| Sbjct 203 CTTCTTGTGCGTCGCCATCCCCGAGGCGACCTTGTTCAGCTCCTCGAAGCTGTGAACCCA 144 Query 5004 GAAGTATTCATCGAAGTACAGGTTGCCGTGATACGACTGCGCGGTGCGGGCGTTCGTGCC 5063 |||| | || |||||||| | |||||||| | |||||||||||| ||||||||| Sbjct 143 GAAGAACTCGTCGAAGTAGAAATTGCCGTGCCGCCCCTGCGCGGTGCGAAAGTTCGTGCC 84 Query 5064 GAGAAAGT 5071 ||| |||| Sbjct 83 GAGGAAGT 76 >seq125599 Length=907 Score = 102 bits (112), Expect = 2e-17 Identities = 360/556 (65%), Gaps = 17/556 (3%) Strand=Plus/Plus Query 4525 GGGTCGTAGCCGACCCACACCGGCCGGTTGCCGAACGGCCGTGGCGCGAACGGCCGGAAG 4584 || ||||||||| ||||||| || || | |||| |||| |||| || ||| |||| Sbjct 273 GGATCGTAGCCGGCCCACACGGGGCGCTCGCCGTACGGGCGTGCGGCCTCCGGATTGAAG 332 Query 4585 TCTTCCCATACCTCCCAACTGTCCACCATCCCGCGCATGAGCA--TCGC-GAGCGGAAAC 4641 || ||| ||||| ||| || || || ||| || ||| || | | ||| Sbjct 333 TCGGTCCAGTCCTCCATGGAGTCG--CAGCC-GCATTTGATCAGGTCGTTGAACCGGAAC 389 Query 4642 ACCGACGCGTTGTCGTCGATGAATACGCACATGAGCAGGTTGGCGAAATCGAGTT-CGCT 4700 | ||| | ||||||||| ||| |||| || || ||||| || ||| | ||| Sbjct 390 GCGGACAGGCTGTCGTCGACGAAGTCGCAGTCGAATAGATTGGCAAACTCGTCTGGCGCA 449 Query 4701 GTACTCCAGGCGCAGCTGGTCGAGGTCGAACAGGTTGC-AGCCGCCGCGGAGCGCATCCT 4759 || || |||||||| ||||| ||||||||||| || | |||| || | ||||| Sbjct 450 -TATTCGTCGCGCAGCTCGTCGATGTCGAACAGGTCGCAACCCGCGGCCTCG-GCATCGG 507 Query 4760 CCACCGTCACGATTTGGCGCCACTGGCCGTCCG--CGCAGCGCATGCCGTCGCGAAGCGC 4817 | ||| ||||| || ||||| || |||| | | |||| |||||| ||||| Sbjct 508 TGATCGTGACGATATGCCGCCAGATGCGATCCGGTCCCTGCGC--GCCGTCCTTCAGCGC 565 Query 4818 GGCGTGGCTCAGGTCGAGCTTGATCTGTTTGTCCTTGGCCTTGCCG-CGGTTGAACAGTG 4876 | ||||||| | |||| || || | | | | |||| | |||| |||||| | | Sbjct 566 GTCGTGGCTGACATCGATCTCGACGCGCTCGGCTTTGG-CGCGCCGCCGGTTGCGCCGCT 624 Query 4877 CGCCGGACCAGAACGGATAGGCCTCATGCGACAAGCTGGACGGCGTGGAGAAGT-AGGTC 4935 | || | |||| |||||||||| |||||| | | |||||||| ||||||| Sbjct 625 CACCCGTCCAGTACGGATAGGCGGCATGCGCGATCGTCGACGGCGTCGAGAAGTNNNNNN 684 Query 4936 TGACGCCAGTGCTTGTGGATCGCCATGCCGGAGGCGACCTTGCGCAGTTCCTGGAAGCGC 4995 ||| || || ||||| ||| || |||| ||| | Sbjct 685 NNNNNNNNNNNNNNNNNNNNNNNCATACCCGACGCGACTTTGTTCAACTCCTCGAAACTA 744 Query 4996 GGCACCCAGAAGTATTCATCGAAGTACAGGTTGCCGTGATACGACTGCGCGGTGCGGGCG 5055 | ||||| ||| |||| || ||||| | |||||||||| | ||||| ||||| Sbjct 745 TGAACCCAAAAGAATTCGTCAAAGTAGAAGTTGCCGTGACGCCCTTGCGCAGTGCGAAAA 804 Query 5056 TTCGTGCCGAGAAAGT 5071 ||||| |||||||||| Sbjct 805 TTCGTTCCGAGAAAGT 820 >seq56468 Length=1893 Score = 89.7 bits (98), Expect = 1e-13 Identities = 120/163 (74%), Gaps = 8/163 (5%) Strand=Plus/Minus Query 7183 CGACTTCCAGACTCGCATCCGCGACGCCATCATCAAGCGCCA-GGCGCTGGACCGCATCA 7241 ||| |||||||| | | ||||| || ||||||| |||||| ||| | ||| ||||| Sbjct 805 CGATTTCCAGACCCTGCTGCGCGATGCGATCATCA-GCGCCAAGGCCGTCGACATCATCA 747 Query 7242 TGATCGGCTTCAACGGTGTGAGCCGTGCC---GCTACGTCGGACCGGGTGGCCAACCCGA 7298 ||||||||||||||| |||| ||| | ||| | ||| ||| ||| | ||| Sbjct 746 CGATCGGCTTCAACGGCGTGAAGGTAGCCAAGGATACCT---ACCCGGTCGCCTATCCGC 690 Query 7299 TGCTGCAGGACGTGAACAAGGGCTGGCTGCAGAACCTGCGTGA 7341 | || |||||||| |||||||||||||| ||| || | || || Sbjct 689 TCCTTCAGGACGTCAACAAGGGCTGGCTCCAGCACATCCGCGA 647 >seq268213 Length=253 Score = 84.2 bits (92), Expect = 5e-12 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 4924 GAGAAGTAGGTCTGACGCCAGTGCTTGTGGATCGCCATGCCGGAGGCGACCTTGCGCAGT 4983 ||||| || || | ||||| ||||||| |||||||| || |||||||||| ||| Sbjct 251 GAGAAATACGTGCGGGGCCAGCGCTTGTGCATCGCCATCGCGCTGGCGACCTTGTTGAGT 192 Query 4984 TCCTGGAAGCGCGGCACCCAGAAGTATTCATCGAAGTACAGGTTGCCGTGATACGACTGC 5043 |||| ||| | |||||| | || ||||| || | ||||||||||| |||| Sbjct 191 TCCTCGAACCCGTAGGTCCAGAAAAACTCGTCGAAATAGAAATTGCCGTGATAGCCCTGC 132 Query 5044 GCGGTGCGGGCGTTCGTGCCGAGAAA 5069 |||||||| || || || ||||| || Sbjct 131 GCGGTGCGCGCATTGGTCCCGAGGAA 106 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 123502690098812