Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heliconius_20pachinus_20[genbank_20GCA_5F900068735.1_202017-04-26]
277,083 sequences; 279,264,790 total letters
Query= NC_009898.1
Length=368683
Score E
Sequences producing significant alignments: (Bits) Value
seq28654 143 6e-29
seq41046 140 8e-28
seq27511 113 1e-19
seq76306 107 5e-18
seq259364 87.8 4e-12
>seq28654
Length=3315
Score = 143 bits (158), Expect = 6e-29
Identities = 176/239 (74%), Gaps = 6/239 (3%)
Strand=Plus/Plus
Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305
|||||| || || | | ||| | |||| || ||||||||| ||||||||||| |
Sbjct 2387 TCCACCACGAAGACGCAATACCAAGTGAAGAGTAGATTCTTTTTGAATATTATAGTCAGA 2446
Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT-- 288363
|| |||||||||||||| ||||| ||||| ||||| |||| ||| ||||| ||||
Sbjct 2447 AAGAGTGCGTCCGTCTTCCAATTGCTTTCCAGCGAAAATCAAACGTTGTTG---ATCTGG 2503
Query 288364 -GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTC 288422
|| || ||||| || || || ||||| ||||| || ||||| |||| |||| | |||
Sbjct 2504 AGGAATGCCTTCCTTGTCTTGAATTTTGGCTTTTACATTTTCAATAGTATCGGAAGGTTC 2563
Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATGTTAT 288481
||||| | || || || || || || || || || || || ||||||||| || |||
Sbjct 2564 AACTTCCAAAGTAATGGTTTTACCCGTAAGTGTTTTCACAAAGATCTGCATTTTGATAT 2622
Score = 136 bits (150), Expect = 9e-27
Identities = 169/230 (73%), Gaps = 6/230 (3%)
Strand=Plus/Plus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||| || || | |||||| | ||| | || |||||||||||| |||||||| |
Sbjct 564 CCACCACGAAGACGAAGTACTAAATGCAAAGTAGATTCTTTTTGGATGTTATAGTCCGAC 623
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
|| ||||| || || ||||| ||||| || || ||||| ||||||||||| ||||||
Sbjct 624 AGAGTGCGGCCATCCTCTAACTGTTTACCAGCAAAGATGAGACGCTGTTG---GTCTGGG 680
Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423
|| || || || || ||||| || || || || ||||| |||| ||| | ||
Sbjct 681 GGAATGCCCTCCTTGTCTTGGATCTTAGCCTTAACATTTTCGATAGTGTCGGATGGCTCC 740
Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
|| || | ||||| |||||||| || |||||||| || || ||||||||
Sbjct 741 ACCTCCAAAGTGATGGTCTTCCCAGTAAGAGTCTTAACAAAGATCTGCAT 790
Score = 116 bits (128), Expect = 9e-21
Identities = 143/194 (74%), Gaps = 6/194 (3%)
Strand=Plus/Plus
Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342
||||| || ||||||||||| | ||| || || || || || | || || || |||||
Sbjct 828 TCTTTCTGAATATTATAGTCAGAGAGAGTACGGCCATCCTCCAGCTGCTTGCCAGCGAAA 887
Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399
|| ||||| ||||| ||||||| || || ||||| || ||||| || ||||| ||
Sbjct 888 ATGAGACGTTGTTG---ATCTGGGGGAATACCCTCTTTGTCTTGGATCTTAGCTTTAACA 944
Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459
||||| |||| || | ||| ||||| | ||||| || ||||| ||||| |||||
Sbjct 945 TTTTCAATAGTGTCTGAGGGTTCAACTTCTAATGTGATAGTTTTCCCTGTCAGTGTCTTT 1004
Query 288460 ACGAATATCTGCAT 288473
|| || ||||||||
Sbjct 1005 ACAAAGATCTGCAT 1018
Score = 116 bits (128), Expect = 9e-21
Identities = 165/231 (71%), Gaps = 6/231 (3%)
Strand=Plus/Plus
Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305
|||||| ||||| | ||| || | || | || ||||| || ||||| || || |
Sbjct 1247 TCCACCACGGAGACGAAGCACTAAGTGCAGGGTTGACTCTTTCTGAATATTGTAATCAGA 1306
Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT-- 288363
| ||||| || ||||| ||||| ||||| || || || ||||||||||| |||
Sbjct 1307 CAAAGTGCGACCATCTTCCAATTGCTTTCCAGCAAAAATGAGACGCTGTTG---GTCTGG 1363
Query 288364 -GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTC 288422
||||| || || |||||||| ||||| ||||| || || || || | || | |||
Sbjct 1364 GGGGATGCCCTCCTTATCCTGTATTTTAGCTTTGACATTCTCGATTGTGTCAGATGGTTC 1423
Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
|||||| || || || ||||| || |||| || ||||| ||||| |||||
Sbjct 1424 TACTTCCAGGGTAATGGTCTTTCCAGTCAATGTTTTGACAAATATTTGCAT 1474
Score = 114 bits (126), Expect = 3e-20
Identities = 164/230 (71%), Gaps = 6/230 (3%)
Strand=Plus/Plus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||| || || | ||||| | ||||| || ||||||||||| || ||||| |
Sbjct 1476 CCACCTCGCAGACGCAGTACTAAATGAAGGGTAGACTCTTTTTGGATGTTGTAGTCAGAC 1535
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
|| ||||| || ||||||| || || || || ||||| ||||| ||||| |||||||
Sbjct 1536 AGGGTGCGACCATCTTCTAGCTGCTTGCCAGCAAAGATAAGACGTTGTTG---ATCTGGG 1592
Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423
|| || |||||||| || || || || || || ||||| || | || | ||
Sbjct 1593 GGAATACCCTCTTTATCTTGAATCTTAGCCTTTACATTTTCAATGGTGTCAGATGGCTCC 1652
Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
|| || || || || ||||| || || || |||||||| ||||| |||||
Sbjct 1653 ACCTCCAGAGTTATAGTCTTGCCTGTTAGTGTCTTGACAAATATTTGCAT 1702
Score = 107 bits (118), Expect = 5e-18
Identities = 139/192 (72%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341
|||||||||||| || ||||| | || || || || ||||||||||| || || || ||
Sbjct 1967 TTCTTTTTGGATGTTGTAGTCAGACAGTGTACGACCATCTTCTAATTGCTTGCCCGCAAA 2026
Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401
|| ||||| |||||| || || |||||||| || |||||||| |||||||| ||
Sbjct 2027 AATAAGACGTTGTTGATCCGGAGGAATGCCTTCTTTGTCTTGGATTTTAGCTTTCACATT 2086
Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461
||| || | || | ||| ||||| | || || || || || || || || || ||
Sbjct 2087 TTCAATTGTGTCAGAAGCTTCAACTTCTAAAGTAATTGTTTTTCCAGTGAGTGTTTTAAC 2146
Query 288462 GAATATCTGCAT 288473
|| || |||||
Sbjct 2147 AAAGATTTGCAT 2158
>seq41046
Length=7774
Score = 140 bits (154), Expect = 8e-28
Identities = 178/244 (73%), Gaps = 1/244 (0%)
Strand=Plus/Plus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
|| ||||| |||| ||| || ||||| | ||| ||| ||||| || || ||||| |
Sbjct 7155 CCTCCGCGAAGTCGAAGCACAAGATGCAATGTGGATTCCTTTTGAATGTTGTAGTCAGAC 7214
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
| || ||||| ||||||| |||||| || || ||||||| ||| || || |||
Sbjct 7215 AATGTACGTCCATCTTCTAGTTGTTTACCAGCAAAGATCAAACGTTGCTGGTCTGGTGGA 7274
Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCA-CGTTTTCTATAGAATCGCTCGATTCTAC 288425
|| ||||| ||||| |||||||| ||||| | | |||||||||| ||| | || ||
Sbjct 7275 ATACCTTCCTTATCTTGGATTTTAGCTTTTAACATTTTCTATAGTATCAGAGGCCTCCAC 7334
Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATGTTATTCTA 288485
||||| || || || || || || || ||||||||||| || |||||| || | | ||
Sbjct 7335 CTCGAGGGTAATGGTTTTACCCGTAAGGGTCTTGACGAAAATTTGCATTGTGAGACTGTA 7394
Query 288486 ATAT 288489
||||
Sbjct 7395 ATAT 7398
>seq27511
Length=800
Score = 113 bits (124), Expect = 1e-19
Identities = 165/232 (71%), Gaps = 6/232 (3%)
Strand=Plus/Minus
Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305
|||||| | || | ||||| || || | || ||| || || ||||| ||||| |
Sbjct 672 TCCACCTCTCAGCCGCAGTACCAGGTGCAAAGTTGATTCCTTCTGAATATTGTAGTCAGA 613
Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365
|| |||||||| ||||| | || ||||| || || || || | || ||| |||||
Sbjct 612 TAGTGTGCGTCCATCTTCAAGCTGCTTTCCAGCAAAAATAAGTCTTTGCTGA---TCTGG 556
Query 288366 G---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTC 288422
| || || ||||||||||| |||||||| || || ||||| || | ||| | |||
Sbjct 555 GGGAATACCCTCTTTATCCTGAATTTTCGCCTTAACATTTTCAATTGTATCAGAAGCTTC 496
Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474
||||| | ||||| ||||| || ||||| ||||| || || || ||||||
Sbjct 495 CACTTCCAAAGTGATAGTCTTGCCAGTCAGTGTCTTTACAAAAATTTGCATT 444
Score = 100 bits (110), Expect = 7e-16
Identities = 138/193 (72%), Gaps = 0/193 (0%)
Strand=Plus/Minus
Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341
||| || || |||||||| || | | || ||||| ||||| | ||||||||||| ||
Sbjct 408 TTCCTTCTGAATATTATAATCTGACAATGTACGTCCATCTTCCAGCTGTTTTCCTGCAAA 349
Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401
|| || | |||||| | || || |||||||| || || || || || || || ||
Sbjct 348 AATAAGCCTCTGTTGGTCAGGAGGAATGCCTTCTTTGTCTTGAATCTTTGCCTTAACATT 289
Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461
|||||| | ||| | ||| ||||| | ||||| || || || ||||| ||||| ||
Sbjct 288 TTCTATTGTATCAGAAGCTTCCACTTCCAAAGTGATAGTTTTGCCAGTCAGTGTCTTTAC 229
Query 288462 GAATATCTGCATT 288474
|| || ||||||
Sbjct 228 AAAAATTTGCATT 216
Score = 98.7 bits (108), Expect = 2e-15
Identities = 154/219 (70%), Gaps = 6/219 (3%)
Strand=Plus/Minus
Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305
|||||| | || | ||||| || || | || |||||| || || || || || |
Sbjct 216 TCCACCTCTCAGCCGTAGTACTAGGTGCAAAGTAGATTCTTTCTGAATGTTGTAATCAGA 157
Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365
|| |||||||| ||||| | || ||||| || || || || | || ||| |||||
Sbjct 156 TAGTGTGCGTCCATCTTCAAGCTGCTTTCCAGCAAAAATAAGTCTTTGCTGA---TCTGG 100
Query 288366 G---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTC 288422
| ||||| ||||||||||| ||||| ||||| || ||||| || | ||| | ||
Sbjct 99 GGGAATTCCCTCTTTATCCTGAATTTTTGCTTTAACATTTTCAATTGTATCAGAAGGCTC 40
Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461
||||| | ||||| ||||| || ||||| ||||| ||
Sbjct 39 AACTTCCAAAGTGATAGTCTTGCCAGTCAGTGTCTTTAC 1
Score = 89.7 bits (98), Expect = 1e-12
Identities = 91/118 (77%), Gaps = 3/118 (3%)
Strand=Plus/Minus
Query 288360 ATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCT 288416
||||||| ||||| ||||||||||| |||||||| || || ||||| || | |||
Sbjct 789 ATCTGGGGGAATTCCCTCTTTATCCTGAATTTTCGCCTTAACATTTTCAATTGTATCAGA 730
Query 288417 CGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474
| ||| ||||| | ||||| ||||| || ||||| ||||| || ||||| ||||||
Sbjct 729 AGCTTCCACTTCCAATGTGATAGTCTTGCCAGTCAGTGTCTTTACAAATATTTGCATT 672
>seq76306
Length=316
Score = 107 bits (118), Expect = 5e-18
Identities = 144/199 (72%), Gaps = 6/199 (3%)
Strand=Plus/Minus
Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341
||| || |||||||||||||| | | ||||| || ||||| | ||| ||||| |||||
Sbjct 248 TTCCTTCTGGATATTATAGTCTGACAATGTGCGCCCATCTTCCAGTTGCTTTCCGGCGAA 189
Query 288342 GATCAGACGCTGTTGAGAATCT---GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398
||||| | ||||| |||| || || ||||| || || || || || || || ||
Sbjct 188 AATCAGTCTTTGTTG---ATCTGGAGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTTAC 132
Query 288399 GTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458
|||||| || | ||| | ||| ||||| | ||||| || ||||| || | ||| ||
Sbjct 131 GTTTTCGATTGTATCAGAAGCTTCCACTTCCAATGTGATGGTTTTCCCAGTTAAAGTTTT 72
Query 288459 GACGAATATCTGCATTATG 288477
||||| || ||||| |||
Sbjct 71 TACGAAGATTTGCATGATG 53
>seq259364
Length=501
Score = 87.8 bits (96), Expect = 4e-12
Identities = 150/214 (70%), Gaps = 8/214 (4%)
Strand=Plus/Minus
Query 269112 CGAAAAAGAGTTCATTTGTGACGCTATCCCATGTTCTA--TGATCGGTATGAATGCCGAT 269169
||||||||||||| |||| || || |||| | || | ||||||| ||||| |||||
Sbjct 496 CGAAAAAGAGTTCCTTTGCGATGCACTCCC--GGTCAAGCTGATCGGCATGAACGCCGAC 439
Query 269170 CTCATGAATCAATATATCGAATTCGTGGCTGATCGTATCTTCACG--GCACTCGGTTATG 269227
|| ||| || || ||||| ||||| || || || |||| | || ||||| |
Sbjct 438 CTTATGTGCCAGTACATCGAGTTCGTCGCCGACCG--CCTTCTTGTTGCCGTCGGTAACC 381
Query 269228 AGAAAGTGTACAATTCGAAGAATCCCTTCGCCTTTATGGAACTAATTTCGCTCGAAGGAA 269287
||| ||||| | |||| || |||| || ||||| | || || |||| ||||
Sbjct 380 CGAAGCACTACAACGCTCAGAACCCGTTCGATTTCATGGAGATGATCTCCCTCGCCGGAA 321
Query 269288 AGACGAACTTCTTCGAAAAGCGTGTCAGCGACTA 269321
|||| ||||| ||||| ||||| || ||||||
Sbjct 320 AGACCAACTTTTTCGAGAAGCGCGTTTCCGACTA 287
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1175466478317274
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