Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20pachinus_20[genbank_20GCA_5F900068735.1_202017-04-26] 277,083 sequences; 279,264,790 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq28654 143 6e-29 seq41046 140 8e-28 seq27511 113 1e-19 seq76306 107 5e-18 seq259364 87.8 4e-12 >seq28654 Length=3315 Score = 143 bits (158), Expect = 6e-29 Identities = 176/239 (74%), Gaps = 6/239 (3%) Strand=Plus/Plus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 |||||| || || | | ||| | |||| || ||||||||| ||||||||||| | Sbjct 2387 TCCACCACGAAGACGCAATACCAAGTGAAGAGTAGATTCTTTTTGAATATTATAGTCAGA 2446 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT-- 288363 || |||||||||||||| ||||| ||||| ||||| |||| ||| ||||| |||| Sbjct 2447 AAGAGTGCGTCCGTCTTCCAATTGCTTTCCAGCGAAAATCAAACGTTGTTG---ATCTGG 2503 Query 288364 -GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTC 288422 || || ||||| || || || ||||| ||||| || ||||| |||| |||| | ||| Sbjct 2504 AGGAATGCCTTCCTTGTCTTGAATTTTGGCTTTTACATTTTCAATAGTATCGGAAGGTTC 2563 Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATGTTAT 288481 ||||| | || || || || || || || || || || || ||||||||| || ||| Sbjct 2564 AACTTCCAAAGTAATGGTTTTACCCGTAAGTGTTTTCACAAAGATCTGCATTTTGATAT 2622 Score = 136 bits (150), Expect = 9e-27 Identities = 169/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | |||||| | ||| | || |||||||||||| |||||||| | Sbjct 564 CCACCACGAAGACGAAGTACTAAATGCAAAGTAGATTCTTTTTGGATGTTATAGTCCGAC 623 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| || || ||||| ||||| || || ||||| ||||||||||| |||||| Sbjct 624 AGAGTGCGGCCATCCTCTAACTGTTTACCAGCAAAGATGAGACGCTGTTG---GTCTGGG 680 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || || || || || ||||| || || || || ||||| |||| ||| | || Sbjct 681 GGAATGCCCTCCTTGTCTTGGATCTTAGCCTTAACATTTTCGATAGTGTCGGATGGCTCC 740 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || | ||||| |||||||| || |||||||| || || |||||||| Sbjct 741 ACCTCCAAAGTGATGGTCTTCCCAGTAAGAGTCTTAACAAAGATCTGCAT 790 Score = 116 bits (128), Expect = 9e-21 Identities = 143/194 (74%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| || ||||||||||| | ||| || || || || || | || || || ||||| Sbjct 828 TCTTTCTGAATATTATAGTCAGAGAGAGTACGGCCATCCTCCAGCTGCTTGCCAGCGAAA 887 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 || ||||| ||||| ||||||| || || ||||| || ||||| || ||||| || Sbjct 888 ATGAGACGTTGTTG---ATCTGGGGGAATACCCTCTTTGTCTTGGATCTTAGCTTTAACA 944 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 ||||| |||| || | ||| ||||| | ||||| || ||||| ||||| ||||| Sbjct 945 TTTTCAATAGTGTCTGAGGGTTCAACTTCTAATGTGATAGTTTTCCCTGTCAGTGTCTTT 1004 Query 288460 ACGAATATCTGCAT 288473 || || |||||||| Sbjct 1005 ACAAAGATCTGCAT 1018 Score = 116 bits (128), Expect = 9e-21 Identities = 165/231 (71%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 |||||| ||||| | ||| || | || | || ||||| || ||||| || || | Sbjct 1247 TCCACCACGGAGACGAAGCACTAAGTGCAGGGTTGACTCTTTCTGAATATTGTAATCAGA 1306 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT-- 288363 | ||||| || ||||| ||||| ||||| || || || ||||||||||| ||| Sbjct 1307 CAAAGTGCGACCATCTTCCAATTGCTTTCCAGCAAAAATGAGACGCTGTTG---GTCTGG 1363 Query 288364 -GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTC 288422 ||||| || || |||||||| ||||| ||||| || || || || | || | ||| Sbjct 1364 GGGGATGCCCTCCTTATCCTGTATTTTAGCTTTGACATTCTCGATTGTGTCAGATGGTTC 1423 Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 |||||| || || || ||||| || |||| || ||||| ||||| ||||| Sbjct 1424 TACTTCCAGGGTAATGGTCTTTCCAGTCAATGTTTTGACAAATATTTGCAT 1474 Score = 114 bits (126), Expect = 3e-20 Identities = 164/230 (71%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | ||||| | ||||| || ||||||||||| || ||||| | Sbjct 1476 CCACCTCGCAGACGCAGTACTAAATGAAGGGTAGACTCTTTTTGGATGTTGTAGTCAGAC 1535 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| || ||||||| || || || || ||||| ||||| ||||| ||||||| Sbjct 1536 AGGGTGCGACCATCTTCTAGCTGCTTGCCAGCAAAGATAAGACGTTGTTG---ATCTGGG 1592 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || || |||||||| || || || || || || ||||| || | || | || Sbjct 1593 GGAATACCCTCTTTATCTTGAATCTTAGCCTTTACATTTTCAATGGTGTCAGATGGCTCC 1652 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || || || ||||| || || || |||||||| ||||| ||||| Sbjct 1653 ACCTCCAGAGTTATAGTCTTGCCTGTTAGTGTCTTGACAAATATTTGCAT 1702 Score = 107 bits (118), Expect = 5e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 |||||||||||| || ||||| | || || || || ||||||||||| || || || || Sbjct 1967 TTCTTTTTGGATGTTGTAGTCAGACAGTGTACGACCATCTTCTAATTGCTTGCCCGCAAA 2026 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 || ||||| |||||| || || |||||||| || |||||||| |||||||| || Sbjct 2027 AATAAGACGTTGTTGATCCGGAGGAATGCCTTCTTTGTCTTGGATTTTAGCTTTCACATT 2086 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 ||| || | || | ||| ||||| | || || || || || || || || || || Sbjct 2087 TTCAATTGTGTCAGAAGCTTCAACTTCTAAAGTAATTGTTTTTCCAGTGAGTGTTTTAAC 2146 Query 288462 GAATATCTGCAT 288473 || || ||||| Sbjct 2147 AAAGATTTGCAT 2158 >seq41046 Length=7774 Score = 140 bits (154), Expect = 8e-28 Identities = 178/244 (73%), Gaps = 1/244 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || ||||| |||| ||| || ||||| | ||| ||| ||||| || || ||||| | Sbjct 7155 CCTCCGCGAAGTCGAAGCACAAGATGCAATGTGGATTCCTTTTGAATGTTGTAGTCAGAC 7214 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | || ||||| ||||||| |||||| || || ||||||| ||| || || ||| Sbjct 7215 AATGTACGTCCATCTTCTAGTTGTTTACCAGCAAAGATCAAACGTTGCTGGTCTGGTGGA 7274 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCA-CGTTTTCTATAGAATCGCTCGATTCTAC 288425 || ||||| ||||| |||||||| ||||| | | |||||||||| ||| | || || Sbjct 7275 ATACCTTCCTTATCTTGGATTTTAGCTTTTAACATTTTCTATAGTATCAGAGGCCTCCAC 7334 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATGTTATTCTA 288485 ||||| || || || || || || || ||||||||||| || |||||| || | | || Sbjct 7335 CTCGAGGGTAATGGTTTTACCCGTAAGGGTCTTGACGAAAATTTGCATTGTGAGACTGTA 7394 Query 288486 ATAT 288489 |||| Sbjct 7395 ATAT 7398 >seq27511 Length=800 Score = 113 bits (124), Expect = 1e-19 Identities = 165/232 (71%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 |||||| | || | ||||| || || | || ||| || || ||||| ||||| | Sbjct 672 TCCACCTCTCAGCCGCAGTACCAGGTGCAAAGTTGATTCCTTCTGAATATTGTAGTCAGA 613 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 || |||||||| ||||| | || ||||| || || || || | || ||| ||||| Sbjct 612 TAGTGTGCGTCCATCTTCAAGCTGCTTTCCAGCAAAAATAAGTCTTTGCTGA---TCTGG 556 Query 288366 G---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTC 288422 | || || ||||||||||| |||||||| || || ||||| || | ||| | ||| Sbjct 555 GGGAATACCCTCTTTATCCTGAATTTTCGCCTTAACATTTTCAATTGTATCAGAAGCTTC 496 Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 ||||| | ||||| ||||| || ||||| ||||| || || || |||||| Sbjct 495 CACTTCCAAAGTGATAGTCTTGCCAGTCAGTGTCTTTACAAAAATTTGCATT 444 Score = 100 bits (110), Expect = 7e-16 Identities = 138/193 (72%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| || || |||||||| || | | || ||||| ||||| | ||||||||||| || Sbjct 408 TTCCTTCTGAATATTATAATCTGACAATGTACGTCCATCTTCCAGCTGTTTTCCTGCAAA 349 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 || || | |||||| | || || |||||||| || || || || || || || || Sbjct 348 AATAAGCCTCTGTTGGTCAGGAGGAATGCCTTCTTTGTCTTGAATCTTTGCCTTAACATT 289 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 |||||| | ||| | ||| ||||| | ||||| || || || ||||| ||||| || Sbjct 288 TTCTATTGTATCAGAAGCTTCCACTTCCAAAGTGATAGTTTTGCCAGTCAGTGTCTTTAC 229 Query 288462 GAATATCTGCATT 288474 || || |||||| Sbjct 228 AAAAATTTGCATT 216 Score = 98.7 bits (108), Expect = 2e-15 Identities = 154/219 (70%), Gaps = 6/219 (3%) Strand=Plus/Minus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 |||||| | || | ||||| || || | || |||||| || || || || || | Sbjct 216 TCCACCTCTCAGCCGTAGTACTAGGTGCAAAGTAGATTCTTTCTGAATGTTGTAATCAGA 157 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 || |||||||| ||||| | || ||||| || || || || | || ||| ||||| Sbjct 156 TAGTGTGCGTCCATCTTCAAGCTGCTTTCCAGCAAAAATAAGTCTTTGCTGA---TCTGG 100 Query 288366 G---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTC 288422 | ||||| ||||||||||| ||||| ||||| || ||||| || | ||| | || Sbjct 99 GGGAATTCCCTCTTTATCCTGAATTTTTGCTTTAACATTTTCAATTGTATCAGAAGGCTC 40 Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 ||||| | ||||| ||||| || ||||| ||||| || Sbjct 39 AACTTCCAAAGTGATAGTCTTGCCAGTCAGTGTCTTTAC 1 Score = 89.7 bits (98), Expect = 1e-12 Identities = 91/118 (77%), Gaps = 3/118 (3%) Strand=Plus/Minus Query 288360 ATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCT 288416 ||||||| ||||| ||||||||||| |||||||| || || ||||| || | ||| Sbjct 789 ATCTGGGGGAATTCCCTCTTTATCCTGAATTTTCGCCTTAACATTTTCAATTGTATCAGA 730 Query 288417 CGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 | ||| ||||| | ||||| ||||| || ||||| ||||| || ||||| |||||| Sbjct 729 AGCTTCCACTTCCAATGTGATAGTCTTGCCAGTCAGTGTCTTTACAAATATTTGCATT 672 >seq76306 Length=316 Score = 107 bits (118), Expect = 5e-18 Identities = 144/199 (72%), Gaps = 6/199 (3%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| || |||||||||||||| | | ||||| || ||||| | ||| ||||| ||||| Sbjct 248 TTCCTTCTGGATATTATAGTCTGACAATGTGCGCCCATCTTCCAGTTGCTTTCCGGCGAA 189 Query 288342 GATCAGACGCTGTTGAGAATCT---GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398 ||||| | ||||| |||| || || ||||| || || || || || || || || Sbjct 188 AATCAGTCTTTGTTG---ATCTGGAGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTTAC 132 Query 288399 GTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458 |||||| || | ||| | ||| ||||| | ||||| || ||||| || | ||| || Sbjct 131 GTTTTCGATTGTATCAGAAGCTTCCACTTCCAATGTGATGGTTTTCCCAGTTAAAGTTTT 72 Query 288459 GACGAATATCTGCATTATG 288477 ||||| || ||||| ||| Sbjct 71 TACGAAGATTTGCATGATG 53 >seq259364 Length=501 Score = 87.8 bits (96), Expect = 4e-12 Identities = 150/214 (70%), Gaps = 8/214 (4%) Strand=Plus/Minus Query 269112 CGAAAAAGAGTTCATTTGTGACGCTATCCCATGTTCTA--TGATCGGTATGAATGCCGAT 269169 ||||||||||||| |||| || || |||| | || | ||||||| ||||| ||||| Sbjct 496 CGAAAAAGAGTTCCTTTGCGATGCACTCCC--GGTCAAGCTGATCGGCATGAACGCCGAC 439 Query 269170 CTCATGAATCAATATATCGAATTCGTGGCTGATCGTATCTTCACG--GCACTCGGTTATG 269227 || ||| || || ||||| ||||| || || || |||| | || ||||| | Sbjct 438 CTTATGTGCCAGTACATCGAGTTCGTCGCCGACCG--CCTTCTTGTTGCCGTCGGTAACC 381 Query 269228 AGAAAGTGTACAATTCGAAGAATCCCTTCGCCTTTATGGAACTAATTTCGCTCGAAGGAA 269287 ||| ||||| | |||| || |||| || ||||| | || || |||| |||| Sbjct 380 CGAAGCACTACAACGCTCAGAACCCGTTCGATTTCATGGAGATGATCTCCCTCGCCGGAA 321 Query 269288 AGACGAACTTCTTCGAAAAGCGTGTCAGCGACTA 269321 |||| ||||| ||||| ||||| || |||||| Sbjct 320 AGACCAACTTTTTCGAGAAGCGCGTTTCCGACTA 287 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1175466478317274