Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20pachinus_20[genbank_20GCA_5F900068735.1_202017-04-26] 277,083 sequences; 279,264,790 total letters Query= NC_009993.2 Length=53746 Score E Sequences producing significant alignments: (Bits) Value seq268996 333 9e-87 seq227914 205 3e-48 seq180633 86.0 2e-12 seq38994 84.2 7e-12 seq84156 82.4 3e-11 >seq268996 Length=1099 Score = 333 bits (368), Expect = 9e-87 Identities = 629/905 (70%), Gaps = 38/905 (4%) Strand=Plus/Plus Query 6240 GCTCGGCGTCGCCCTCACCGACGCCATCGCGCCGGAGGACGTGAACACCACGCCCACCAC 6299 |||||| ||||| || |||||||||||||| || || | ||| |||| ||| || Sbjct 209 GCTCGGTGTCGCACTGACCGACGCCATCGCCCCCGAACAGGTGGTCACCGACCCCGTCAA 268 Query 6300 CGACGCGCACGGCCGCCCGGTGACGGCCCTCTACGGCC----TGCCGACCACGGTTGCCG 6355 ||||||| ||| || || ||| | | || ||| | | ||||| || |||| Sbjct 269 CGACGCGATCGGGCGTCCCGTG----CTCGCTGCGGTCGCCATCCCGACGCGCGTGGCCG 324 Query 6356 TCGCCGATGCCGGTATCGAGGTCAAGGTCACCTACGCGGCCAACGCCAACTTCGGCGACC 6415 |||| | ||||| | |||||||||||| |||||| ||||| ||| ||||||||| Sbjct 325 TCGCGTACGCCGGCACCGAGGTCAAGGTGACCTACTCGGCCGCAGCCGGTTTCGGCGACA 384 Query 6416 GCCTCGTGGCCGCGGCCAACGGCACCGTGACGCCCGCCGGGGAGGATGTCGACCCCCGCG 6475 ||||| ||| | || ||||| || |||||||| | | ||| |||||| Sbjct 385 AGCTCGTCGCCACCGCGGCCGGCAAGGTCGGCCCCGCCGGAGCGACACCCGATCCCCGCA 444 Query 6476 CCATCGTCGGGAAGTGCACCGAACCCAAGGGTGTCGTCGTCGGGACGAACGCCGTCGGCC 6535 | |||||||| | ||||||||||| ||||||| || ||| ||| | |||||| || Sbjct 445 CGATCGTCGGTATCTGCACCGAACCGGCCGGTGTCGCCG-CGG--CGAGCACCGTCGCCC 501 Query 6536 TCATGGAAACCGCGTAACGCGGGCGAC-CACGGAACAGGAGAACAG-ACAAC-ATGACAG 6592 ||||| | | | || || | || |||| ||||| | | || ||||| ||| | Sbjct 502 TCATGCGGATCATCTGAC-CGCCCAACACACGAAACAGCA-AGGAGCACAACCATGGT-G 558 Query 6593 CACCCACCGG-GATCGTCAGCGTCAG-CGACGGTCCGGCAATCACCGTTCGGGAGTTGGT 6650 || | || || ||| ||| | || ||||| | | ||||| ||| |||| Sbjct 559 AACAAAGTGGTGAGCGT----GTCCGACGGCGGTCGGT---TGACCGTGTCGGACCTGGT 611 Query 6651 CGGTAATCCCCTGTGGATCCCGACCGCCCTCAAAAAGATGATGGTCAACCAGTTCATCTC 6710 ||| | |||| ||||||| || ||| ||||| || |||||||||| ||||||||| Sbjct 612 CGGGAGTCCCATGTGGATTCCCACCAAGCTCAAGGAGCTGATGGTCAATCAGTTCATCAG 671 Query 6711 CGAATCGCTGTTCCGCAACGGCGGCGCGAACCCCAACGGCGTCGTCGCCTACAACGAAGG 6770 ||| | ||||||||||||| |||| ||||||||||||| || ||| ||| ||| || Sbjct 672 CGAGACACTGTTCCGCAACGCCGGCCCGAACCCCAACGGGATCATCGGCTATCGCGAGGG 731 Query 6771 CAACCCGTCGTTCCTCGAGGACGATGTCGCNNNNNNNNNNNNNNNNGGCGAAATCCCGGT 6830 | ||||| ||||||||| ||||| || ||||| ||||| || Sbjct 732 CGACCCGCTGTTCCTCGACGACGACGTGCAGGACGTCGCCGAGTTCGGCGAGATCCCCGT 791 Query 6831 GTCGGCCGGTGCCCGCGGCCTGCCGCGCACCGCGTTCGCCGTGAAGAAAGCCCTCGGCGT 6890 | ||||| || ||| | ||||| ||||| | ||| || ||||| || | ||||| Sbjct 792 CAGCTCGGGTGCACGGGGCGTCCCGCGTACCGCCTACGCGGTCAAGAAGGCGTTGGGCGT 851 Query 6891 CCGGGTGTCGAAGGAGATGATCGACGAGAACCGCGTCGGCGCGGT-CAACGATCAGATGT 6949 || || |||||||||||||||||||||||| | |||| | ||| || || ||||||| Sbjct 852 GCGCGTCTCGAAGGAGATGATCGACGAGAACAACATCGGTGAGGTGCAGCG-TCAGATGA 910 Query 6950 TGCAGTTGCGCAACACATTCATTCGCGCCAACGACCGGTCGGCGAAGGCACTGTTGCAGT 7009 | ||||| ||||| ||||| |||||||||||||| |||||||||| | |||||| Sbjct 911 CGGCGTTGCAGAACACCTTCATCCGCGCCAACGACCGTGCGGCGAAGGCCATCCTGCAGT 970 Query 7010 CGCCCATCGTGCCGACGC--TGGCCGTTCCGACCGCGTGGGA-CA-ACGGC-GGTAAGGT 7064 || | || | |||| | | | || | ||||| ||||| || || || || ||| Sbjct 971 CG-GCGGCG-GTCGACACCATCCCGGTCACCACCGCCTGGGATCAGACCGCGGGCAAGCC 1028 Query 7065 GCGCACCGACATCGCAATCGCCATCGAACAGATCAGCACGGCGGCCCCGACGGCCTACCC 7124 ||||||||||||| | | |||||||| | | | ||| |||| || || ||| ||| Sbjct 1029 GCGCACCGACATCACCAAGGCCATCGATCGGGTGAGCTCGGCCGCGCCACAGGC---CCC 1085 Query 7125 GGCCG 7129 ||||| Sbjct 1086 GGCCG 1090 >seq227914 Length=424 Score = 205 bits (226), Expect = 3e-48 Identities = 163/196 (83%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 7350 CATCATGGAACGCGGCACCGTCGGGTTCTACTCCGACACCCGGCCGTTGCAGTTCACGGC 7409 |||| |||| ||||||||||| ||||||||| ||||||||||||||||||||||||| | Sbjct 171 CATCCTGGAGCGCGGCACCGTGGGGTTCTACACCGACACCCGGCCGTTGCAGTTCACCGG 230 Query 7410 CCTCTACCCGGAGGGCAACGGCCCCAACGGCGGCCCCACCGAGTCGTACCGGGCCGACGC 7469 ||| ||||||||||||||||||||||||||||| || |||||||| || | ||||| Sbjct 231 CCTTTACCCGGAGGGCAACGGCCCCAACGGCGGTCCGCGCGAGTCGTGGCGCTCGGACGC 290 Query 7470 CTCCCACAAGCGCGCCCTGGCTGTCGACCAGCCGAAGGCCGCCCTGTGGCTCACCGGGAT 7529 ||| |||||||| | | | | |||| ||||| |||||||| ||||||| |||||| | Sbjct 291 CTCGCACAAGCGGGTCATCGGGCTCGATCAGCCCAAGGCCGCGGTGTGGCTGACCGGGGT 350 Query 7530 CGTGACGCCGTGAGCG 7545 ||||| |||||| || Sbjct 351 GGTGACCCCGTGACCG 366 >seq180633 Length=2589 Score = 86.0 bits (94), Expect = 2e-12 Identities = 61/70 (87%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 15218 CGGCAACTGGGCGATCAACACCGGCAACGGGTACTACGGCGGGTTGCAGTTCGACCAACC 15277 |||||||||||| ||||||||||||||||||| || |||||| ||||||||||||| Sbjct 865 CGGCAACTGGGCCATCAACACCGGCAACGGGTTCTTCGGCGGCGTGCAGTTCGACCAGAA 806 Query 15278 GACCTGGGAC 15287 ||||||||| Sbjct 805 CACCTGGGAC 796 >seq38994 Length=7155 Score = 84.2 bits (92), Expect = 7e-12 Identities = 46/46 (100%), Gaps = 0/46 (0%) Strand=Plus/Minus Query 25134 TGACTGGGGGTCAAGGGGTCGCAGGTTCAAATCCTGTCAGCCCGAC 25179 |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 46 TGACTGGGGGTCAAGGGGTCGCAGGTTCAAATCCTGTCAGCCCGAC 1 >seq84156 Length=432 Score = 82.4 bits (90), Expect = 3e-11 Identities = 80/103 (78%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 15189 TGGGATGCCATCGCGCAGGCCGAATCCGGCGGCAACTGGGCGATCAACACCGGCAACGGG 15248 ||||||||| |||| ||| ||| || | ||||||| ||||||||||||||||| Sbjct 301 TGGGATGCCGTCGCCCAGTGCGAGTCGACCAACAACTGGCACATCAACACCGGCAACGGC 360 Query 15249 TACTACGGCGGGTTGCAGTTCGACCAACCGACCTGGGACGCCT 15291 ||||||||||| |||||||| || | |||||||| |||| Sbjct 361 TACTACGGCGGACTGCAGTTCTCGCAGTCCACCTGGGAGGCCT 403 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 171300100196968