Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20pachinus_20[genbank_20GCA_5F900068735.1_202017-04-26] 277,083 sequences; 279,264,790 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq10526 239 5e-58 seq28654 118 1e-21 seq27511 87.8 2e-12 seq193070 86.0 7e-12 seq76306 84.2 2e-11 >seq10526 Length=5062 Score = 239 bits (264), Expect = 5e-58 Identities = 645/984 (66%), Gaps = 27/984 (3%) Strand=Plus/Minus Query 94966 AAAGTGACGGGGGCTTATTTTGTAGAATGGGGCGTGTACGATCGTAAGTTTCCCGCGGAC 95025 ||||| ||| || || || ||||||||||| || || | | || || |||| ||| Sbjct 4132 AAAGTTGTGGGTGCCTACTTCGTAGAATGGGGTGTCTATCCTAGGAAATTCCCCGTGGAT 4073 Query 95026 AAGGTGCCCATTCCCAATCTGACGCATCTATTGTACGGTTTCATACCCATTTGCGGAGGC 95085 | || || || ||||| || ||| | | ||||| || || || |||||||| || Sbjct 4072 CGTATACCTATACCTAATCTTACTCATTTGCTCTACGGCTTTATTCCAATTTGCGGCGGT 4013 Query 95086 GACGGTATCAACGACAGTCTAAAACAGGTACCCGGCTCTTTTGAGGCTTTACAAAAATCA 95145 ||||| || || || ||| ||||| || | ||| ||| | || |||| ||| Sbjct 4012 GACGGCATTAATGATAGTTTAAAAGAGATCGAAGGCAGTTTCCAAGCACTACAGCGATCC 3953 Query 95146 TGTGCCGGCAGAGACGATTTCAAGGTTAGCATCCACGACATTTACGGTGCTCTACAAAAA 95205 ||| |||| | || || ||||| || |||||||| | | || |||||||| Sbjct 3952 TGTAGCGGCCGTGAGGACTTCAAAGTCTCAATCCACGATCCATGGGCAGCATTACAAAAA 3893 Query 95206 CCGCAAAAAGGTGTTTCCGAATACAATGAACCTTACCGTGGCAATTTTGGCCAGCTCATG 95265 || |||||||| | || || || || || ||| ||||| |||||||| | ||| Sbjct 3892 CCACAAAAAGGATTGTCTTCATGGAACGAGCCCTACAAAGGCAACTTTGGCCAATTAATG 3833 Query 95266 GCTATTCGCAAACATAA-----TCCTCATTTGAAAATTTTGCCTAGCATCGGTGGTTGGA 95320 || | || | || ||| | ||||| ||| | || || ||||| |||| Sbjct 3832 -----TCACTAAAACAAGCCCGCCCTGAATTGAAGATTCTTCCCTCTATTGGTGGGTGGA 3778 Query 95321 CACTGAGCGACCCTTTCTATTTTTTCGCCGACGACTATAAACGAAAAGTATTTGTGGACT 95380 | || ||| ||||||| ||||| | ||| | | ||| ||| | ||||||| | | Sbjct 3777 CGCTTGCCGATCCTTTCTTCTTTTTAGTTGACAAATCTAAGAGAACACGATTTGTGCAGT 3718 Query 95381 CTGTTCGTGAATTCTTGCAAGTGTGGAAGTTTTTCGATGGAGTAGACATCGACTGGGAGT 95440 | || || || | | | ||||| || |||||||| || || ||||| ||||||| Sbjct 3717 CAGTAAAGGAGTTTCTTCTAACATGGAAATTCTTCGATGGTGTTGATATCGATTGGGAGT 3658 Query 95441 TTCCCGGCGGAAAGGGTGCCAACCCCGACGTAGGCGATCCTAGCGTGGATGGAAACACAT 95500 | || || || || ||||| ||||| ||| | || | || | | ||||| | | Sbjct 3657 TCCCTGGTGGCAAAGGTGCTAACCCTGACCTCGG-TAGCCCA--GAAGATGGTGATTGTT 3601 Query 95501 ATGTAACTCTATTGAAAGAACTACGCCTAATGCTAGACGAACTGGGTG-------TGGTG 95553 |||||| | | |||||||| |||| ||||| || || || || |||| Sbjct 3600 ATGTAAGTTTGATGAAAGAATTACGTGAGATGCTCGATGAGCTCTCTGCTAAGAATGGT- 3542 Query 95554 AACAAACGCGTGTACGAGTTGACCAGCGCCGTGGGAGCGGGCTACGATAAAATAGACGTG 95613 || ||| ||||| || || || | | || || | |||||||| | || Sbjct 3541 AAGAAA------TACGAATTAACTTCTGCTATTAGCGCTGGATGGGATAAAATCCAAGTT 3488 Query 95614 ATAGATTACTCTTCGGCTAGTCAATATTTGGATCATGTGTTTTTAATGAGTTACGACTTT 95673 | || || | |||| | ||| |||||||| | || || |||||||||||||| Sbjct 3487 GTTGACTATGGTAAGGCTCAAAATTATATGGATCATATTTTCTTGATGAGTTACGACTTC 3428 Query 95674 AAAGGCGCATGGTCCAACACGGATTTGGGTCATCAAACACCATTGTACGCACCTTCGTGG 95733 || || || ||||| || | | || |||||||| ||||||||||| ||| ||||| Sbjct 3427 AAGGGAGCCTGGTCAAATGATACTCTTGGACATCAAACGCCATTGTACGCGCCTGCGTGG 3368 Query 95734 AACCCTGACGACAAGTACACAACTGACTATGCCGTAAAAGAACTGCTTAAGCAAAAAGTA 95793 || || | || | |||||| |||||| || |||||| | |||| ||| ||| Sbjct 3367 AATCCCAAGGAAACTTACACATCTGACTTTGGAGTAAAATACTTGCTGGCGCAGGGAGTG 3308 Query 95794 CCTTCCAACAAAATTGTTGTGGGAGTCGCCATGTACGGCAGAGGGTGGAGTGGTGTGCAC 95853 | | || || ||||| || || || || ||||| || | || |||| ||| || || Sbjct 3307 AATCCTAAGAAGATTGTAGTAGGTGTTGCTATGTATGGTCGTGGCTGGACTGGCGTTCAT 3248 Query 95854 GATTACAAAAACAATAACGTATTTACGGGCGTCGCCACAGGTCCGGTAAAAGGCACATGG 95913 |||||| || |||| | || || ||| ||| || || || || ||||| || ||| Sbjct 3247 GATTACGAAGACAACATTCCCTTCACAGGCAACGCTACTGGACCTGTCAAAGGAACTTGG 3188 Query 95914 GAAAACGGTGTCGTCGATTATAGG 95937 || |||| || || || || ||| Sbjct 3187 CAAGACGGAGTGGTTGACTACAGG 3164 >seq28654 Length=3315 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 |||||||| |||||| || ||||| ||||| ||| ||| || |||||||| || |||| Sbjct 791 ACCTCCTCGTAAACGTAATACCAAGTGCAAAGTGGACTCTTTCTGAATATTATAGTCAGA 850 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 ||||| || | || || |||||||| |||||||| ||||| || || || || | || Sbjct 851 GAGAGTACGGCCATCCTCCAGCTGCTTGCCAGCGAAAATGAGACGTTGTTGATCTGGGGG 910 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 42160 | | ||| ||||| ||| || ||| | | | | ||||| | ||| || Sbjct 911 AATACCCTCTTTGTCTTGGATCTTAGCTTTAACATTTTCAATAGTGTCTGAGGGTTCAAC 970 Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || | ||||| ||||| || || || |||||||||||||| ||||| Sbjct 971 TTCTAATGTGATAGTTTTCCCTGTCAGTGTCTTTACAAAGATCTGCAT 1018 Score = 93.3 bits (102), Expect = 5e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||| | ||| || |||| || ||| || |||||||||||||||| || ||| || | Sbjct 1259 ACGAAGCACTAAGTGCAGGGTTGACTCTTTCTGAATATTGTAATCAGACAAAGTGCGACC 1318 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 || || | ||||| ||||| || ||||| ||||| ||||| | || | || |||||| Sbjct 1319 ATCTTCCAATTGCTTTCCAGCAAAAATGAGACGCTGTTGGTCTGGGGGGATGCCCTCCTT 1378 Query 42113 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 42172 ||| ||||| ||||| || | | ||||| | ||| || || | || || Sbjct 1379 ATCCTGTATTTTAGCTTTGACATTCTCGATTGTGTCAGATGGTTCTACTTCCAGGGTAAT 1438 Query 42173 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 ||| || || || | || || ||||| |||||||| Sbjct 1439 GGTCTTTCCAGTCAATGTTTTGACAAATATTTGCAT 1474 Score = 87.8 bits (96), Expect = 2e-12 Identities = 153/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 |||||| ||||| || | || || ||||||||||| || |||| ||||| || | Sbjct 2399 ACGCAATACCAAGTGAAGAGTAGATTCTTTTTGAATATTATAGTCAGAAAGAGTGCGTCC 2458 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 ||| || | ||||| |||||||| || | || || || || | || | || ||||| Sbjct 2459 GTCTTCCAATTGCTTTCCAGCGAAAATCAAACGTTGTTGATCTGGAGGAATGCCTTCCTT 2518 Query 42113 GTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGA 42171 || | ||| |||| | ||| | | | | || ||| | ||| || || | || | Sbjct 2519 GT-CTTGAATTTTGGCTTTTACATTTTCAATAGTATCGGAAGGTTCAACTTCCAAAGTAA 2577 Query 42172 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 42211 ||||||| ||||| || || || |||||||| |||||||| Sbjct 2578 TGGTTTTACCCGTAAGTGTTTTCACAAAGATCTGCATTTT 2617 Score = 82.4 bits (90), Expect = 8e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| |||| | ||||| || | ||| | || ||||||||| || ||||| |||| Sbjct 1703 ACCACCTCGCAGACGCAGTACTAGATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCAGA 1762 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 || || || | || || | ||||||||||| || || || |||||||| || | ||| Sbjct 1763 GAGGGTGCGACCATCTTCCAATTGCTTACCAGCAAAGATAAGACGCTGCTGATCAGGTGG 1822 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 42160 | || ||| ||||| |||||| ||| | | | | || || | |||||| Sbjct 1823 GATGCCCTCTTTGTCTTGGATTTTAGCTTTTACATTTTCAATAGTATCAGAGGGTTCCAC 1882 Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || | || ||||| || || ||||| || || ||||| || ||||| Sbjct 1883 TTCCAGGGTAATGGTCTTTCCAGTTAGGGTTTTAACAAAAATCTGCAT 1930 >seq27511 Length=800 Score = 87.8 bits (96), Expect = 2e-12 Identities = 151/217 (70%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 41994 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 42053 |||| |||||| ||||| || ||||| |||||||| ||||| | || || || | Sbjct 431 CGCAGCACCAAGTGCAAAGTAGATTCCTTCTGAATATTATAATCTGACAATGTACGTCCA 372 Query 42054 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTG 42113 || || ||||| || || || || || || | ||| ||||| | || | || || ||| Sbjct 371 TCTTCCAGCTGTTTTCCTGCAAAAATAAGCCTCTGTTGGTCAGGAGGAATGCCTTCTTTG 312 Query 42114 TCCATGATTTTTTGTTTGAGCGTCGCC-ACCGTGTCGCTCGATTCCACATCGACCGTGAT 42172 || ||| | |||| | | | | | | || || | |||||| || | ||||| Sbjct 311 TCT-TGAATCTTTGCCTTAACATTTTCTATTGTATCAGAAGCTTCCACTTCCAAAGTGAT 253 Query 42173 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 42209 |||||||| || || ||||||||||| ||||||||| Sbjct 252 AGTTTTGCCAGTCAGTGTCTTTACAAAAATTTGCATT 216 >seq193070 Length=305 Score = 86.0 bits (94), Expect = 7e-12 Identities = 55/60 (92%), Gaps = 0/60 (0%) Strand=Plus/Plus Query 57020 AATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAGGAT 57079 |||||||||| ||||||||||||||||||||| ||||| |||||||||||||||| ||| Sbjct 2 AATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTATACTACCGAAGAT 61 >seq76306 Length=316 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 || || |||| |||||| || || ||||| || ||||| || ||||| || || | | Sbjct 283 CCACCCCTTAGACGCAAAACTAAGTGCAAAGTAGATTCCTTCTGGATATTATAGTCTGAC 224 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 | || ||| | || || || ||||| || ||||| || |||| || || || | || Sbjct 223 AATGTGCGCCCATCTTCCAGTTGCTTTCCGGCGAAAATCAGTCTTTGTTGATCTGGAGGA 164 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCC-ACCGTGTCGCTCGATTCCAC 42160 | || |||||||| ||| | |||| | ||| | | || || | |||||| Sbjct 163 ATGCCTTCCTTGTCT-TGAATCTTTGCCTTTACGTTTTCGATTGTATCAGAAGCTTCCAC 105 Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || | ||||||||||| || |||| || ||||| ||||||||||| Sbjct 104 TTCCAATGTGATGGTTTTCCCAGTTAAAGTTTTTACGAAGATTTGCAT 57 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 541331362096720