Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20pachinus_20[genbank_20GCA_5F900068735.1_202017-04-26] 277,083 sequences; 279,264,790 total letters Query= NC_011288.1 Length=58471 Score E Sequences producing significant alignments: (Bits) Value seq157980 120 1e-22 seq125305 93.3 2e-14 >seq157980 Length=2738 Score = 120 bits (132), Expect = 1e-22 Identities = 99/121 (82%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 43905 CTATGACACCGAGTTTCTCGAAGACGGCCGCACGATCGAGCTGATCTCGATCGGCATCGT 43964 ||| ||||||||||| |||||||||||| || |||| |||||||||||||||||||| Sbjct 694 CTACGACACCGAGTTCCTCGAAGACGGCAAGACCGTCGACCTGATCTCGATCGGCATCGT 635 Query 43965 GTGCGAGGACGGCCGCGAGTACTACGCCGTCAACAACGACATGGACCAGGAGCGCATCCG 44024 ||| || |||||||||||||||||| ||||| |||| ||| ||| |||||||| Sbjct 634 CGCCGAAGATGGCCGCGAGTACTACGCCATCAACTCCGACGCTGACTGGGACCGCATCCG 575 Query 44025 G 44025 | Sbjct 574 G 574 Score = 91.5 bits (100), Expect = 5e-14 Identities = 131/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 44225 AACTCTGGGCGAACTACGCGGCGTACGACCACGTGGTCCTGGCGCAGCTGTGGGGCCGCA 44284 |||| ||||| ||||||| |||||||||||||| | ||| || ||||||| ||| | Sbjct 396 AACTGTGGGCCGACTACGCCGCGTACGACCACGTCGCCCTCGCCCAGCTGTTCGGCAAGA 337 Query 44285 TGATCTCGCTGCCCAAGGGGCTCCCGATGTTCACCCATGACCTGCAGCAGCTGCTCGAAA 44344 ||||| ||||||| || |||| |||| |||| | || | | || || ||| Sbjct 336 TGATCAAACTGCCCACCGGCATCCCCATGTACACCAACGAGATCCGCCAACTCGTCGCCC 277 Query 44345 CCATGGCCGACTTCGAGAAGCCGGAGCAGGACGGCACCGAGCACAACGCGCTCGAAGACG 44404 | ||| ||||| |||| || |||| || || |||||||||||||| |||| Sbjct 276 TCCACCCCGGATTCGACGAGCCCGAACAGGCCGAGGGCGTTCACAACGCGCTCGACGACG 217 Query 44405 CCCGG 44409 ||||| Sbjct 216 CCCGG 212 >seq125305 Length=4407 Score = 93.3 bits (102), Expect = 2e-14 Identities = 89/114 (78%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 43905 CTATGACACCGAGTTTCTCGAAGACGGCCGCACGATCGAGCTGATCTCGATCGGCATCGT 43964 ||| ||||||||||| |||| ||||| || || ||||| ||| ||||||||||| |||| Sbjct 2005 CTACGACACCGAGTTCATCGAGGACGGGCGGACCATCGATCTGGTCTCGATCGGCGTCGT 2064 Query 43965 GTGCGAGGACGGCCGCGAGTACTACGCCGTCAACAACGACATGGACCAGGAGCG 44018 ||||||||| || |||| |||||||||| || || | |||| ||||| Sbjct 2065 CGCCGAGGACGGTCGGGAGTTCTACGCCGTCTCCACGGAGTTCGACCCCGAGCG 2118 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 186370349944318