Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20pachinus_20[genbank_20GCA_5F900068735.1_202017-04-26] 277,083 sequences; 279,264,790 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq10526 194 2e-44 seq259364 120 3e-22 seq28654 116 4e-21 seq41046 109 5e-19 seq133356 96.9 3e-15 seq27511 87.8 2e-12 >seq10526 Length=5062 Score = 194 bits (214), Expect = 2e-44 Identities = 458/679 (67%), Gaps = 16/679 (2%) Strand=Plus/Minus Query 27833 AAAGGCGGCAAGTTCGACATGACAGTGAAGCTGTGCAACGTCGACGGCTGTTCGACAAGT 27892 ||||| || | | | | ||||||||| |||| ||||| | |||||||| ||||| Sbjct 4294 AAAGGTGGAAGATACCAAATGACAGTGGAGCTTTGCAATGAAGACGGCTGCAGTTCAAGT 4235 Query 27893 -AGCGCGGTCAAAGTGATCGTCGCCGACACCGACGGTTCTCATCTCGCGCCGCTAGTATA 27951 | | | ||| || |||| ||||| ||||| || |||| | | || || | ||| Sbjct 4234 GATCCCACCGAAATTG-TCGTGGCCGATACCGATGGAAGTCATTTACCTCCTCTGGAATA 4176 Query 27952 CGATTTCCTCGAAAACAACAAGCGCTTTGAT-AAACATCCCGAGAAAATTGTGGCCGCCT 28010 || ||||| || |||| || | ||||||| || ||| |||||| |||| Sbjct 4175 TACATTGGGAGAAAAAAATAAGCCGTTCAAGCAAACATCTGGA-AAAGTTGTGGGTGCCT 4117 Query 28011 ATTTCGTCGAGTGGGGCGTGTATCTGCGGCAGTTTCCCGTCGACAAAGTGCCCGCGCCCA 28070 | ||||| || ||||| || |||| || | || ||||| || | || || | Sbjct 4116 ACTTCGTAGAATGGGGTGTCTATCCTAGGAAATTCCCCGTGGATCGTATACCTATACCTA 4057 Query 28071 ACCTGTCGCACTTGCTGTACGGTTTCGTGCCGATATGCGGCGGCGACGGCATAAACGACG 28130 | || | || ||||| ||||| || | || || |||||||| |||||||| || || Sbjct 4056 ATCTTACTCATTTGCTCTACGGCTTTATTCCAATTTGCGGCGGTGACGGCATTAATGATA 3997 Query 28131 CCCTCAAGACCGTTCCC-GGCAGTTTCGAGGCGCTGCAGCGCTCGTGCGCCGGGCGCGCC 28189 | || | | || ||||||||| | || || ||||| || || ||| || | Sbjct 3996 GTTTAAA-AGAGATCGAAGGCAGTTTCCAAGCACTACAGCGATCCTGTAGCGGCCGTGAG 3938 Query 28190 GACTTCAAGGTGACGATCCACGATCCCTGGGCCGCCATTCAGAAGCCGCAAAAGGGCGTC 28249 |||||||| || | ||||||||||| ||||| || | || || || ||||| || | Sbjct 3937 GACTTCAAAGTCTCAATCCACGATCCATGGGCAGCATTACAAAAACCACAAAAAGGATTG 3878 Query 28250 TCTACGTGGAACGAGCCGTACAAAGGCAACTTTGGGCAATTGATGAGCGTCAAATTAGCC 28309 ||| | ||||||||||| ||||||||||||||||| ||||| ||| | ||| |||| Sbjct 3877 TCTTCATGGAACGAGCCCTACAAAGGCAACTTTGGCCAATTAATGTCACTAAAACAAGCC 3818 Query 28310 AATCCGCACTTGAAGGTGCTGGCGTCGATCGGCGGCTGGACGCTGTCGGACCCATTC--- 28366 || | |||||| | || | || || || || |||||||| | || || ||| Sbjct 3817 CGCCCTGAATTGAAGATTCTTCCCTCTATTGGTGGGTGGACGCTTGCCGATCCTTTCTTC 3758 Query 28367 -TTTCACATGCACGACGCGACCGTGCGCCAAACG-TTCATCGATTCCGTCGTGGACTTTC 28424 ||| | || || | | | | | | ||| || | | || || ||| |||| Sbjct 3757 TTTTTAGTTG-ACAAATCTA-AGAG---AACACGATTTGTGCAGTCAGTAAAGGAGTTTC 3703 Query 28425 TGCTGACCTGGAAGTTCTTCGACGGCGTCGACATCGATTGGGAGTTTCCGGGCGGCAAAG 28484 | || || ||||| |||||||| || || || |||||||||||||| || || ||||||| Sbjct 3702 TTCTAACATGGAAATTCTTCGATGGTGTTGATATCGATTGGGAGTTCCCTGGTGGCAAAG 3643 Query 28485 GAGCCAATCCCGATGTCGG 28503 | || || || || |||| Sbjct 3642 GTGCTAACCCTGACCTCGG 3624 >seq259364 Length=501 Score = 120 bits (132), Expect = 3e-22 Identities = 150/203 (74%), Gaps = 2/203 (1%) Strand=Plus/Minus Query 52627 TCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAACGCGCAGT 52686 ||||||| ||||| || | || || |||||| ||||| | ||||||||||| | Sbjct 497 TCGAAAAAGAGTTCCTTTGCGATGCACTCCCGGTCAAGCTGATCGGCATGAACGCCGACC 438 Query 52687 CCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTG-TTGGTGCAGCTCGGGCAGCCA 52745 |||||| ||||||||||||| || || || || || ||| ||| | |||| | || Sbjct 437 TTATGTGCCAGTACATCGAGTTCGTCGCCGACCGCCTTCTTGTTGCCG-TCGGTAACCCG 379 Query 52746 AAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGAGGGCAAG 52805 ||| ||| |||||||| || ||||| || || ||| | | || || || | || ||| Sbjct 378 AAGCACTACAACGCTCAGAACCCGTTCGATTTCATGGAGATGATCTCCCTCGCCGGAAAG 319 Query 52806 ACCAACTTTTTCGAGAAGCGAGT 52828 |||||||||||||||||||| || Sbjct 318 ACCAACTTTTTCGAGAAGCGCGT 296 >seq28654 Length=3315 Score = 116 bits (128), Expect = 4e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTC-GCT 138446 ||||| || | ||||| |||||||||| | | || ||||||||||| || || || | | Sbjct 2160 CCGCCACGAAGCCGCAATACTAAATGTAGGGTAGATTCCTTTTGAATATTATAATCAGAT 2219 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || ||||| || || |||||||| || | | | || || | |||||| || || || Sbjct 2220 AAT-GTACGGCCATCTTCCAGTTGTTTTCCAGCAAAAATAAGCCTCTGTTGATCTGGGGG 2278 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 ||||| |||||||| ||| ||| || | | ||| | ||||||| || ||| || Sbjct 2279 AATACCCTCTTTGTCTTGGATCTTTGCCTTCACATTTTCGATAGTGTCGGACGGCTCTAC 2338 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||| | || | ||||| || || ||||| || ||||| |||||||| Sbjct 2339 CTCTAAAGTGATGGTTTTTCCTGTAAGAGTCTTAACAAAGATCTGCAT 2386 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || ||||||| ||||| |||| ||| | | | ||||||||||| ||||||||||| Sbjct 1704 CCACCTCGCAGACGCAGTACTAGATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCAGAG 1763 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || || || | ||| ||||| | | |||| |||||||| || || || || Sbjct 1764 AGGGTGCGACCATCTTCCAATTGCTTACCAGCAAAGATAAGACGCTGCTGATCAGGTGGG 1823 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || || |||||||| |||||| ||||| | ||| | || || | | ||||| Sbjct 1824 ATGCCCTCTTTGTCTTGGATTTTAGCTTTTACATTTTCAATAGTATCAGAGGGTTCCACT 1883 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | || || ||||| || ||||| |||||||||||||| Sbjct 1884 TCCAGGGTAATGGTCTTTCCAGTTAGGGTTTTAACAAAAATCTGCAT 1930 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | |||||||| | | || || ||||| ||||| ||||| | Sbjct 564 CCACCACGAAGACGAAGTACTAAATGCAAAGTAGATTCTTTTTGGATGTTATAGTCCGAC 623 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| || ||||| | |||||||| | | |||| |||||||||||||| || || Sbjct 624 AGAGTGCGGCCATCCTCTAACTGTTTACCAGCAAAGATGAGACGCTGTTGGTCTGGGGGA 683 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || || || ||||| ||| || || | | ||| | ||||||| | ||||||| Sbjct 684 ATGCCCTCCTTGTCTTGGATCTTAGCCTTAACATTTTCGATAGTGTCGGATGGCTCCACC 743 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | || || ||||| ||||| || ||||| |||||||| Sbjct 744 TCCAAAGTGATGGTCTTCCCAGTAAGAGTCTTAACAAAGATCTGCAT 790 Score = 102 bits (112), Expect = 8e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || ||||||| ||||| |||||||| | | | ||||| ||||| ||||||||||| | Sbjct 1476 CCACCTCGCAGACGCAGTACTAAATGAAGGGTAGACTCTTTTTGGATGTTGTAGTCAGAC 1535 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || || || || || || || | | |||| ||||| ||||| || || || Sbjct 1536 AGGGTGCGACCATCTTCTAGCTGCTTGCCAGCAAAGATAAGACGTTGTTGATCTGGGGGA 1595 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 ||||| ||||| || ||| | || | |||| | ||| | |||||| | | |||||| Sbjct 1596 ATACCCTCTTTATC-TTGAATCTTAGCCTTTACATTTTCAATGGTGTCAGATGGCTCCAC 1654 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||| | || | || || || || || || || ||||| || ||||| Sbjct 1655 CTCCAGAGTTATAGTCTTGCCTGTTAGTGTCTTGACAAATATTTGCAT 1702 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| ||||| | ||||| || | | || || ||||| ||||||||||| | Sbjct 1932 CCACCTCTTAAACGAAGTACTAAGTGCAAAGTAGATTCTTTTTGGATGTTGTAGTCAGAC 1991 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||||| || || | ||| || || | | | || ||||| ||||| |||||||| Sbjct 1992 AGTGTACGACCATCTTCTAATTGCTTGCCCGCAAAAATAAGACGTTGTTGATCCGGAGGA 2051 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || ||||||||||| |||||| ||| | | ||| | ||||| | | || || Sbjct 2052 ATGCCTTCTTTGTCTTGGATTTTAGCTTTCACATTTTCAATTGTGTCAGAAGCTTCAACT 2111 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | ||||| ||||| || ||||| ||||| || ||||| Sbjct 2112 TCTAAAGTAATTGTTTTTCCAGTGAGTGTTTTAACAAAGATTTGCAT 2158 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || ||||| | ||| | || || || | | | ||||| || || || |||||||| | Sbjct 1020 CCTCCTCGGAGACGGAGTACCAAGTGAAGGGTCGACTCTTTCTGGATATTGTAGTCAGAC 1079 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || || || ||||||||||| | |||| ||||| ||||| || ||||| Sbjct 1080 AGGGTGCGGCCATCTTCCAGTTGTTTACCAGCGAAGATAAGACGTTGTTGATCTGGAGGA 1139 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA-TTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||| || || ||| | || | ||||| | ||| | |||||| | | ||| || Sbjct 1140 ATTCCTTCCTTATC-TTGAATCTTAGCTTTAACATTTTCAATGGTGTCTGATGGCTCAAC 1198 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | ||||| ||||| || ||||| ||||| || ||||| Sbjct 1199 TTCCAAAGTTATTGTTTTTCCAGTAAGTGTTTTGACAAATATTTGCAT 1246 >seq41046 Length=7774 Score = 109 bits (120), Expect = 5e-19 Identities = 142/195 (73%), Gaps = 1/195 (1%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 || |||||||||||||||||||| || ||||| || || ||||||||||| | | Sbjct 7188 GATTCCTTTTGAATGTTGTAGTCAGACAATGTACGTCCATCTTCTAGTTGTTTACCAGCA 7247 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA- 138539 |||| | ||| || ||||| || || |||||||| || || |||||| |||||| Sbjct 7248 AAGATCAAACGTTGCTGGTCTGGTGGAATACCTTCCTTATCTTGGATTTTAGCTTTTAAC 7307 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 | ||| | || || | | ||||||||||| || | |||||||| || || || || Sbjct 7308 ATTTTCTATAGTATCAGAGGCCTCCACCTCGAGGGTAATGGTTTTACCCGTAAGGGTCTT 7367 Query 138600 TACAAAAATCTGCAT 138614 || ||||| ||||| Sbjct 7368 GACGAAAATTTGCAT 7382 >seq133356 Length=434 Score = 96.9 bits (106), Expect = 3e-15 Identities = 95/120 (79%), Gaps = 2/120 (2%) Strand=Plus/Minus Query 124741 GGCTTCTACTACATGGGCGTCGGCGACGAAGTGCGTTGCGCTTTCTGCAAAGTCGAAATT 124800 |||||||| || ||||| |||||| ||||| || ||||| || || ||||| |||||| Sbjct 221 GGCTTCTATTATCTGGGCCGCGGCGATGAAGTACGCTGCGCGTTTTGTAAAGTAGAAATT 162 Query 124801 ATGCGATGGCAGCCCGGCGACGATCC-GCTAACGGACCACAAACGATGGGCGCCTCAGTG 124859 ||| |||| | ||||||||||| || || ||||||| | || |||||||||||||| Sbjct 161 ATGAAATGGGTTGCGGGCGACGATCCCGCCAA-GGACCACCAGCGCTGGGCGCCTCAGTG 103 >seq27511 Length=800 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/195 (71%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 || ||||| ||||| || || || || ||||| || || || ||||| || | | Sbjct 410 GATTCCTTCTGAATATTATAATCTGACAATGTACGTCCATCTTCCAGCTGTTTTCCTGCA 351 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA- 138539 | || || | ||||||||| ||||| || ||||||||||| ||| | |||| |||| Sbjct 350 AAAATAAGCCTCTGTTGGTCAGGAGGAATGCCTTCTTTGTC-TTGAATCTTTGCCTTAAC 292 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 | ||| | || || | | ||||| || | || | ||||| |||||||| || || Sbjct 291 ATTTTCTATTGTATCAGAAGCTTCCACTTCCAAAGTGATAGTTTTGCCAGTCAGTGTCTT 232 Query 138600 TACAAAAATCTGCAT 138614 ||||||||| ||||| Sbjct 231 TACAAAAATTTGCAT 217 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494543576567760