Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20pachinus_20[genbank_20GCA_5F900068735.1_202017-04-26] 277,083 sequences; 279,264,790 total letters Query= NC_011357.1 Length=62147 Score E Sequences producing significant alignments: (Bits) Value seq67190 116 1e-21 seq84442 89.7 2e-13 >seq67190 Length=2338 Score = 116 bits (128), Expect = 1e-21 Identities = 385/584 (66%), Gaps = 31/584 (5%) Strand=Plus/Plus Query 34613 TCAATGATAAACGCCACATAGACGAAGCCCTGCCATGTGCTGACGTAAGTAAAATCAGCC 34672 || |||| || || || |||||||| ||| ||| || |||||| ||||| || | | Sbjct 1440 TCGATGACGAAGGCGACGTAGACGAACCCCGCCCAAGTTGCGACGTAGGTAAAGTCCGAC 1499 Query 34673 ACCCACAGCTGGTCAGGTCGTTCTGCCACGAACTGCGGCTTTACGCGGTCGCCTGCGGCA 34732 ||||||||| || || | || ||||||| | || ||| | |||| |||| Sbjct 1500 ACCCACAGCATGTTCGGCGCTGGGGCGTAGAACTGCCGGTTGACGTGATCGC--GCGGGC 1557 Query 34733 ACGGC-----TTTCCGGCTGATGGTCGTACGGACCTTTTTACCCCGGAGAACACCGGCAA 34787 ||||| ||| |||||||||||| || ||| || || |||| || || || | Sbjct 1558 ACGGCGCCGCTTTATCGCTGATGGTCGTGCGCACCGGCTTGCCGCGGATTACCCCCGCCA 1617 Query 34788 GTCCCATAACCGCCATGAGACGTGCCACTGTACATCTGGCCACCCTGATTCCTTCCCGTA 34847 ||||| | ||| || ||| |||| ||||| | || ||| | || ||||| | Sbjct 1618 AGCCCATCTCGCGCATCAGCCGTTCCACGGTACAGCGCGCGACCGCAAAGCCCTCCCGCA 1677 Query 34848 ACAACTGACGCCAGACTTTACGCACACCGTACACC-TGATGATTTTCATCGTATACGCGC 34906 || ||| |||||||| || ||||| ||||| ||| || | || || || ||||||| Sbjct 1678 TCATCTGCCGCCAGACCTTGCGCACGCCGTAGACCGCGAAG-TTCTCCGCGAATACGCGA 1736 Query 34907 TGTATCTCTCTCTTCAG--CCAGTCGTCGTGCTGCGCACGGGC--ACTGCGTTTATCCGG 34962 ||||| |||| || ||| || | |||| || || || | || || Sbjct 1737 GCGATCTCGGTCTTGAGGATCAG--ATCCTCACGCGCCCGTGCCGACAGACGCGAT--GG 1792 Query 34963 ATGATGTCGCTGTTGCTGAC--AATGGTAATACGTTGACGGGGCAATATGCAGTTCGCTG 35020 || |||||||| || ||| | ||| || || || ||||| || |||| | | | Sbjct 1793 ATCCTGTCGCTG-CGC-GACGTGCTCGTAGTAGGTGGATGGGGCGATCGGCAGGACACGG 1850 Query 35021 CATACCGGTCCGACCCCGTACTGCTCACGCAGCTTATCCAGCAGTGGCATCATTTTTTCC 35080 || | ||| ||||||| || || || | | || | | | |||| | || Sbjct 1851 CAGATCGGCTCGACCCCATAGGCATCGCGGTGATCGTCAATGAAAGCGATCA---TCGCC 1907 Query 35081 AGA---GGCGGTCGAACTCCGCCTTCGCAAAATAAGCGGAAGCCTGGCGAAGGATATCGT 35137 || ||||||||| |||||||| ||| ||||| || || |||| ||| ||||| |||| Sbjct 1908 GGAACGGGCGGTCGAGCTCCGCCTGCGCGAAATATGCCGATGCCTTGCGCAGGATTTCGT 1967 Query 35138 T--ACTGCGGCGCAGTTCACGATTTTCACGTTCCAGCTCTTTCA 35179 | |||| |||||||| || || ||||||||| | |||| Sbjct 1968 TGGCCTGC--CGCAGTTCGCGGACCTCGCGTTCCAGCGCCTTCA 2009 >seq84442 Length=3313 Score = 89.7 bits (98), Expect = 2e-13 Identities = 189/277 (68%), Gaps = 4/277 (1%) Strand=Plus/Minus Query 15391 TCACCGATATGAGAAATGGCTTCAACGGCCTGGCTGCGAAAGTACAAACGGCGCTGAAAG 15450 ||||||| ||| | || |||||| | |||||||| | || || || ||| | | Sbjct 2921 TCACCGACATGCGCAAGGGCTTCGATGGCCTGGCGGTATTGGTGCAGCAGGTGCTTCAGG 2862 Query 15451 ACGATCC-CATGTCCGGCCATGTTTTCATTTTCCGGGGCCGCAGCGGCAGTCAGGTTAAA 15509 | | || ||| ||||| | ||| ||||| ||| ||||| | | | ||| Sbjct 2861 AGAAACCACAT-TCCGGTGCGCTGTTCGCGTTCCGTGGCAAGCGCGGCGACCTGATCAAA 2803 Query 15510 CTGCTGTGGTCCACCGGTGACGGACTGTGCCTCCTGACCAAACGGCTGGAGCGTGGGCGC 15569 ||||||||| | |||| | ||||| ||||| | | || ||| |||| || ||||| Sbjct 2802 TTGCTGTGGTTCGACGGTCAGGGACTCTGCCTGTTTTCGAAGCGGATGGACCGGGGGCGT 2743 Query 15570 TTCGCCTGGCCGTCAGCCCGTGAT-GGCAAAGTGTTCCTTACGCAGGCGCAGCTGGCGAT 15628 |||| ||||||| | ||| || |||| |||| || || ||||||| || |||| Sbjct 2742 TTCGTCTGGCCGGT-GACCGCGACCGGCACAGTGGCGCTGACATCGGCGCAGGTGTCGAT 2684 Query 15629 GCTGCTGGAAGGTATCGACTGGCGACAGCCTAAGCGG 15665 ||| ||||| || ||||||||||| | || ||||| Sbjct 2683 GCTTCTGGAGGGCATCGACTGGCGCCGCCCAGAGCGG 2647 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 198094844774214