Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20pachinus_20[genbank_20GCA_5F900068735.1_202017-04-26] 277,083 sequences; 279,264,790 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq10526 141 9e-29 seq28654 104 2e-17 seq259364 95.1 1e-14 seq27511 95.1 1e-14 seq27512 93.3 4e-14 seq133356 82.4 7e-11 >seq10526 Length=5062 Score = 141 bits (156), Expect = 9e-29 Identities = 399/601 (66%), Gaps = 20/601 (3%) Strand=Plus/Minus Query 22220 GTCGTCGCCGATACGGACGGTTCGCATTTGGCGCCTCTCGCGTACGACTATTTTGA--AA 22277 ||||| |||||||| || || ||||| | ||||| | || || ||| || || Sbjct 4219 GTCGTGGCCGATACCGATGGAAGTCATTTACCTCCTCTGGAATAT-AC-ATTGGGAGAAA 4162 Query 22278 ACAACAAGCGTTTCAAG-ACGCATCCTAATAAAATTGTCGCCGGCTATTTTGTCGAGTGG 22336 | || |||| |||||| | |||| | ||| |||| | | ||| || || || ||| Sbjct 4161 AAAATAAGCCGTTCAAGCAAACATCTGGA-AAAGTTGTGGGTGCCTACTTCGTAGAATGG 4103 Query 22337 GGAGTGTACCTTCGCCAGTTTCCCGCCGACAAGGTGCCCGTGCCGAACCTGTCGCATTTG 22396 || || || | | | | || |||| || | || | || || || | |||||| Sbjct 4102 GGTGTCTATCCTAGGAAATTCCCCGTGGATCGTATACCTATACCTAATCTTACTCATTTG 4043 Query 22397 CTCTACGGTTTCGTGCCAATATGCGGCGGAGACGGCATCAACGACGCCCTGAAAACGGTG 22456 |||||||| || | ||||| |||||||| |||||||| || || | ||| | | Sbjct 4042 CTCTACGGCTTTATTCCAATTTGCGGCGGTGACGGCATTAATGATAGTTTAAAAGAGATC 3983 Query 22457 CCGGGAAGCTTCGAGGCGTTGCAACGGTCGTG---CGTCAATAGAGCCGATTTCAAGGTG 22513 || || ||| | || | || || || || || | | ||| || ||||| || Sbjct 3982 GAAGGCAGTTTCCAAGCACTACAGCGATCCTGTAGCGGCCGT-GAG--GACTTCAAAGTC 3926 Query 22514 ACCATACACGATCCGTGGGCGGCCGTACAAAAACCTCAAAAAGGCGTGTCGTCGTGGAAC 22573 | || |||||||| ||||| || |||||||||| |||||||| |||| || |||||| Sbjct 3925 TCAATCCACGATCCATGGGCAGCATTACAAAAACCACAAAAAGGATTGTCTTCATGGAAC 3866 Query 22574 GAACCGTACAAAGGCAACTTTGGTCAATTGATGGCAGTGAAAAGAGCGAATCCTCATCTC 22633 || || ||||||||||||||||| ||||| ||| || | ||| ||| ||| | | Sbjct 3865 GAGCCCTACAAAGGCAACTTTGGCCAATTAATGTCACTAAAACAAGCCCGCCCTGAATTG 3806 Query 22634 AAAGTGTTAGCATCGATCGGCGGATGGACGTTGTCCGATCCGTTTTATCATATGCACGAC 22693 || | | | || || || || |||||| | ||||||| || | | | ||| Sbjct 3805 AAGATTCTTCCCTCTATTGGTGGGTGGACGCTTGCCGATCCTTTCTTCTTTTTAGTTGAC 3746 Query 22694 AAGAACGTGAGACAA----ATTTTCATCGATTCGGTGGAAGAGTATTTGATCACGTGGAA 22749 | || | ||| || |||| | | || || | |||| | | | || ||||| Sbjct 3745 A--AATCTAAGAGAACACGATTT--GTGCAGTCAGTAAAGGAGTTTCTTCTAACATGGAA 3690 Query 22750 GTTCTTTGACGGCGTCGATATTGATTGGGAGTTTCCCGGCGGCAAGGGGGCGAATCCTAA 22809 ||||| || || || ||||| ||||||||||| || || ||||| || || || ||| | Sbjct 3689 ATTCTTCGATGGTGTTGATATCGATTGGGAGTTCCCTGGTGGCAAAGGTGCTAACCCTGA 3630 Query 22810 C 22810 | Sbjct 3629 C 3629 >seq28654 Length=3315 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 |||||| || | ||||| ||||| || | ||||| |||||||||||||| || || Sbjct 2387 TCCACCACGAAGACGCAATACCAAGTGAAGAGTAGATTCTTTTTGAATATTATAGTCAGA 2446 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 | ||||| || || | || ||||||||| | ||||| || || ||||| ||||| Sbjct 2447 AAGAGTGCGTCCGTCTTCCAATTGCTTTCCAGCGAAAATCAAACGTTGTTGATCTGGAGG 2506 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGC-TTGAGTTGTTCGACGGTGTCCGTACTCTCGA 127064 ||||| ||||||| | ||| ||| || || | | ||| | || || | | || | Sbjct 2507 AATGCCTTCCTTGT-CTTGAATTTTGGCTTTTACATTTTCAATAGTATCGGAAGGTTCAA 2565 Query 127065 CTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| | || | ||||| || || || ||||| ||||| |||||||| Sbjct 2566 CTTCCAAAGTAATGGTTTTACCCGTAAGTGTTTTCACAAAGATCTGCAT 2614 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 |||||| || | || | ||| || || | || |||||||| |||||||||||||| Sbjct 1247 TCCACCACGGAGACGAAGCACTAAGTGCAGGGTTGACTCTTTCTGAATATTGTAATCAGA 1306 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 || |||||| ||| || | || |||||||| | || | ||||| || || || || Sbjct 1307 CAAAGTGCGACCATCTTCCAATTGCTTTCCAGCAAAAATGAGACGCTGTTGGTCTGGGGG 1366 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 ||||||||||| ||| ||||| |||| | |||| ||||| | || || Sbjct 1367 GATGCCCTCCTTATCCTGTATTTTAGCTTTGACATTCTCGATTGTGTCAGATGGTTCTAC 1426 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||| | ||| | || || || |||| ||||| ||||| || ||||| Sbjct 1427 TTCCAGGGTAATGGTCTTTCCAGTCAATGTTTTGACAAATATTTGCAT 1474 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | || ||||| | ||||| |||||||| || || || || | Sbjct 564 CCACCACGAAGACGAAGTACTAAATGCAAAGTAGATTCTTTTTGGATGTTATAGTCCGAC 623 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| ||| |||| |||||| ||||| |||| | ||||| || || || || Sbjct 624 AGAGTGCGGCCATCCTCTAACTGTTTACCAGCAAAGATGAGACGCTGTTGGTCTGGGGGA 683 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 |||||||||||||| ||| || ||| | | ||||| ||||| | ||| || Sbjct 684 ATGCCCTCCTTGTCTTGGATCTTAGCCTTAACATTTTCGATAGTGTCGGATGGCTCCACC 743 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | || | || || || || ||||| || ||||| |||||||| Sbjct 744 TCCAAAGTGATGGTCTTCCCAGTAAGAGTCTTAACAAAGATCTGCAT 790 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 ||||| || ||||||| ||||| || ||||||||||| ||||| | || || | Sbjct 2172 CGCAATACTAAATGTAGGGTAGATTCCTTTTGAATATTATAATCAGATAATGTACGGCCA 2231 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || || ||||||||||| | || | | ||| ||||| || || || ||||| ||| Sbjct 2232 TCTTCCAGTTGTTTTCCAGCAAAAATAAGCCTCTGTTGATCTGGGGGAATACCCTCTTTG 2291 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 || ||| || ||| | | ||||| ||||| | ||| || || | || | Sbjct 2292 TCTTGGATCTTTGCCTTCACATTTTCGATAGTGTCGGACGGCTCTACCTCTAAAGTGATG 2351 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||||| || || ||||| || ||||| |||||||| Sbjct 2352 GTTTTTCCTGTAAGAGTCTTAACAAAGATCTGCAT 2386 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | |||| || ||||| | |||||||||||||| || ||||| || | Sbjct 1476 CCACCTCGCAGACGCAGTACTAAATGAAGGGTAGACTCTTTTTGGATGTTGTAGTCAGAC 1535 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| ||| |||||||| || ||||| |||| | || || ||||| || || Sbjct 1536 AGGGTGCGACCATCTTCTAGCTGCTTGCCAGCAAAGATAAGACGTTGTTGATCTGGGGGA 1595 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || ||||| || || || || ||| | | ||| | |||||| | ||| || Sbjct 1596 ATACCCTCTTTATCTTGAATCTTAGCCTTTACATTTTCAATGGTGTCAGATGGCTCCACC 1655 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | || | || ||||| || || || || ||||| || ||||| Sbjct 1656 TCCAGAGTTATAGTCTTGCCTGTTAGTGTCTTGACAAATATTTGCAT 1702 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | |||| || | ||| | |||||||| ||||| || ||||| || Sbjct 1704 CCACCTCGCAGACGCAGTACTAGATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCAGAG 1763 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| ||| || | || || ||||| |||| | ||||||||||| || || Sbjct 1764 AGGGTGCGACCATCTTCCAATTGCTTACCAGCAAAGATAAGACGCTGCTGATCAGGTGGG 1823 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 |||||||| ||||| |||||| || | | ||| | || || | || ||| Sbjct 1824 ATGCCCTCTTTGTCTTGGATTTTAGCTTTTACATTTTCAATAGTATCAGAGGGTTCCACT 1883 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | ||| | || || || || || ||||| |||||||||||||| Sbjct 1884 TCCAGGGTAATGGTCTTTCCAGTTAGGGTTTTAACAAAAATCTGCAT 1930 >seq259364 Length=501 Score = 95.1 bits (104), Expect = 1e-14 Identities = 118/159 (74%), Gaps = 2/159 (1%) Strand=Plus/Minus Query 47412 GGAATGAACGCGGAGATGATGAGAAAGTACATCGAATTTGTCGCCGACCGCCTGCTCGTT 47471 || |||||||| || | ||| | |||||||||| || |||||||||||||| || ||| Sbjct 453 GGCATGAACGCCGACCTTATGTGCCAGTACATCGAGTTCGTCGCCGACCGCCTTCTTGTT 394 Query 47472 CAGCTAAAGTATCCC-AAGATTTACCACACCGAGAATCCATTCGAGTTTATGAACAACAT 47530 | ||| ||| ||| ||| || | |||| || ||||| || ||| | | || Sbjct 393 GCCGTCG-GTAACCCGAAGCACTACAACGCTCAGAACCCGTTCGATTTCATGGAGATGAT 335 Query 47531 TTCGCTCGAGGGCAAGACCAACTTTTTCGAGAAGCGCGT 47569 || |||| || |||||||||||||||||||||||||| Sbjct 334 CTCCCTCGCCGGAAAGACCAACTTTTTCGAGAAGCGCGT 296 >seq27511 Length=800 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 |||||| | | |||| |||||| || | ||||| || || |||||||| ||||| Sbjct 444 TCCACCCCTAAGGCGCAGCACCAAGTGCAAAGTAGATTCCTTCTGAATATTATAATCTGA 385 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 || || || ||| || ||||||||||| || | || | | ||| || || ||||| Sbjct 384 CAATGTACGTCCATCTTCCAGCTGTTTTCCTGCAAAAATAAGCCTCTGTTGGTCAGGAGG 325 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTG-CTTGAGTTGTTCGACGGTGTCCGTACTCTCGA 127064 ||||| || |||| | ||| | | || ||| | | ||| | || || | | || | Sbjct 324 AATGCCTTCTTTGT-CTTGAATCTTTGCCTTAACATTTTCTATTGTATCAGAAGCTTCCA 266 Query 127065 CTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| | || | |||||||| ||||| || ||||||||||| ||||| Sbjct 265 CTTCCAAAGTGATAGTTTTGCCAGTCAGTGTCTTTACAAAAATTTGCAT 217 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 |||||| | | |||| |||| || | || || || || ||||||||||| || Sbjct 672 TCCACCTCTCAGCCGCAGTACCAGGTGCAAAGTTGATTCCTTCTGAATATTGTAGTCAGA 613 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 | ||||| ||| || ||||| |||||||| | || | || |||||||| || || Sbjct 612 TAGTGTGCGTCCATCTTCAAGCTGCTTTCCAGCAAAAATAAGTCTTTGCTGATCTGGGGG 553 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || ||||| || ||| |||||| ||| | | ||| | || || | | || || Sbjct 552 AATACCCTCTTTATCCTGAATTTTCGCCTTAACATTTTCAATTGTATCAGAAGCTTCCAC 493 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||| | || | || ||||| ||||| || ||||||||||| ||||| Sbjct 492 TTCCAAAGTGATAGTCTTGCCAGTCAGTGTCTTTACAAAAATTTGCAT 445 >seq27512 Length=242 Score = 93.3 bits (102), Expect = 4e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 126905 ACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCT 126964 || ||||||| ||||| ||||| ||||||||||| || | || || ||| || Sbjct 19 ACTAAATGTAAAGTAGATTCTTTCTGAATATTGTAGTCTGATAGTGTACGTCCATCCTCA 78 Query 126965 AGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTG 127024 ||||| |||||||| | || | | || || || ||||| ||||| ||||| | | || Sbjct 79 AGCTGCTTTCCAGCAAAAATAAGCCTTTGTTGGTCTGGAGGAATGCCTTCCTTAT-CTTG 137 Query 127025 ATTTTCTG-CTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTT 127083 | ||| || ||| | | ||||| ||||| | ||| ||||| | || | || || Sbjct 138 AATTTTTGCCTTAACATTTTCGATTGTGTCAGAGGGCTCAACTTCCAGTGTGATAGTCTT 197 Query 127084 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||| ||||| || |||||||| || ||||| Sbjct 198 GCCAGTCAGTGTCTTTACAAATATTTGCAT 227 >seq133356 Length=434 Score = 82.4 bits (90), Expect = 7e-11 Identities = 90/120 (75%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 114468 GGCTTCTGTTACATTGGTCGCGGCGACGAAGTCCGCTGCGCCTTTTGCAAGGTCGAAATT 114527 ||||||| ||| | || |||||||| ||||| |||||||| ||||| || || |||||| Sbjct 221 GGCTTCTATTATCTGGGCCGCGGCGATGAAGTACGCTGCGCGTTTTGTAAAGTAGAAATT 162 Query 114528 ATGAATTGGAAACGAGGAGACGATCCGCTCGTCGATCACAAGAGATGGGCGCCTCAATGC 114587 ||||| ||| || |||||||| | || ||| || | ||||||||||| ||| Sbjct 161 ATGAAATGGGTTGCGGGCGACGATCCCGCCAAGGACCACCAGCGCTGGGCGCCTCAGTGC 102 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 473853885147920