Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heliconius_20pachinus_20[genbank_20GCA_5F900068735.1_202017-04-26]
277,083 sequences; 279,264,790 total letters
Query= NC_011616.1
Length=148634
Score E
Sequences producing significant alignments: (Bits) Value
seq10526 141 9e-29
seq28654 104 2e-17
seq259364 95.1 1e-14
seq27511 95.1 1e-14
seq27512 93.3 4e-14
seq133356 82.4 7e-11
>seq10526
Length=5062
Score = 141 bits (156), Expect = 9e-29
Identities = 399/601 (66%), Gaps = 20/601 (3%)
Strand=Plus/Minus
Query 22220 GTCGTCGCCGATACGGACGGTTCGCATTTGGCGCCTCTCGCGTACGACTATTTTGA--AA 22277
||||| |||||||| || || ||||| | ||||| | || || ||| || ||
Sbjct 4219 GTCGTGGCCGATACCGATGGAAGTCATTTACCTCCTCTGGAATAT-AC-ATTGGGAGAAA 4162
Query 22278 ACAACAAGCGTTTCAAG-ACGCATCCTAATAAAATTGTCGCCGGCTATTTTGTCGAGTGG 22336
| || |||| |||||| | |||| | ||| |||| | | ||| || || || |||
Sbjct 4161 AAAATAAGCCGTTCAAGCAAACATCTGGA-AAAGTTGTGGGTGCCTACTTCGTAGAATGG 4103
Query 22337 GGAGTGTACCTTCGCCAGTTTCCCGCCGACAAGGTGCCCGTGCCGAACCTGTCGCATTTG 22396
|| || || | | | | || |||| || | || | || || || | ||||||
Sbjct 4102 GGTGTCTATCCTAGGAAATTCCCCGTGGATCGTATACCTATACCTAATCTTACTCATTTG 4043
Query 22397 CTCTACGGTTTCGTGCCAATATGCGGCGGAGACGGCATCAACGACGCCCTGAAAACGGTG 22456
|||||||| || | ||||| |||||||| |||||||| || || | ||| | |
Sbjct 4042 CTCTACGGCTTTATTCCAATTTGCGGCGGTGACGGCATTAATGATAGTTTAAAAGAGATC 3983
Query 22457 CCGGGAAGCTTCGAGGCGTTGCAACGGTCGTG---CGTCAATAGAGCCGATTTCAAGGTG 22513
|| || ||| | || | || || || || || | | ||| || ||||| ||
Sbjct 3982 GAAGGCAGTTTCCAAGCACTACAGCGATCCTGTAGCGGCCGT-GAG--GACTTCAAAGTC 3926
Query 22514 ACCATACACGATCCGTGGGCGGCCGTACAAAAACCTCAAAAAGGCGTGTCGTCGTGGAAC 22573
| || |||||||| ||||| || |||||||||| |||||||| |||| || ||||||
Sbjct 3925 TCAATCCACGATCCATGGGCAGCATTACAAAAACCACAAAAAGGATTGTCTTCATGGAAC 3866
Query 22574 GAACCGTACAAAGGCAACTTTGGTCAATTGATGGCAGTGAAAAGAGCGAATCCTCATCTC 22633
|| || ||||||||||||||||| ||||| ||| || | ||| ||| ||| | |
Sbjct 3865 GAGCCCTACAAAGGCAACTTTGGCCAATTAATGTCACTAAAACAAGCCCGCCCTGAATTG 3806
Query 22634 AAAGTGTTAGCATCGATCGGCGGATGGACGTTGTCCGATCCGTTTTATCATATGCACGAC 22693
|| | | | || || || || |||||| | ||||||| || | | | |||
Sbjct 3805 AAGATTCTTCCCTCTATTGGTGGGTGGACGCTTGCCGATCCTTTCTTCTTTTTAGTTGAC 3746
Query 22694 AAGAACGTGAGACAA----ATTTTCATCGATTCGGTGGAAGAGTATTTGATCACGTGGAA 22749
| || | ||| || |||| | | || || | |||| | | | || |||||
Sbjct 3745 A--AATCTAAGAGAACACGATTT--GTGCAGTCAGTAAAGGAGTTTCTTCTAACATGGAA 3690
Query 22750 GTTCTTTGACGGCGTCGATATTGATTGGGAGTTTCCCGGCGGCAAGGGGGCGAATCCTAA 22809
||||| || || || ||||| ||||||||||| || || ||||| || || || ||| |
Sbjct 3689 ATTCTTCGATGGTGTTGATATCGATTGGGAGTTCCCTGGTGGCAAAGGTGCTAACCCTGA 3630
Query 22810 C 22810
|
Sbjct 3629 C 3629
>seq28654
Length=3315
Score = 104 bits (114), Expect = 2e-17
Identities = 162/229 (71%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945
|||||| || | ||||| ||||| || | ||||| |||||||||||||| || ||
Sbjct 2387 TCCACCACGAAGACGCAATACCAAGTGAAGAGTAGATTCTTTTTGAATATTATAGTCAGA 2446
Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005
| ||||| || || | || ||||||||| | ||||| || || ||||| |||||
Sbjct 2447 AAGAGTGCGTCCGTCTTCCAATTGCTTTCCAGCGAAAATCAAACGTTGTTGATCTGGAGG 2506
Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGC-TTGAGTTGTTCGACGGTGTCCGTACTCTCGA 127064
||||| ||||||| | ||| ||| || || | | ||| | || || | | || |
Sbjct 2507 AATGCCTTCCTTGT-CTTGAATTTTGGCTTTTACATTTTCAATAGTATCGGAAGGTTCAA 2565
Query 127065 CTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
|||| | || | ||||| || || || ||||| ||||| ||||||||
Sbjct 2566 CTTCCAAAGTAATGGTTTTACCCGTAAGTGTTTTCACAAAGATCTGCAT 2614
Score = 96.9 bits (106), Expect = 3e-15
Identities = 158/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945
|||||| || | || | ||| || || | || |||||||| ||||||||||||||
Sbjct 1247 TCCACCACGGAGACGAAGCACTAAGTGCAGGGTTGACTCTTTCTGAATATTGTAATCAGA 1306
Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005
|| |||||| ||| || | || |||||||| | || | ||||| || || || ||
Sbjct 1307 CAAAGTGCGACCATCTTCCAATTGCTTTCCAGCAAAAATGAGACGCTGTTGGTCTGGGGG 1366
Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065
||||||||||| ||| ||||| |||| | |||| ||||| | || ||
Sbjct 1367 GATGCCCTCCTTATCCTGTATTTTAGCTTTGACATTCTCGATTGTGTCAGATGGTTCTAC 1426
Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
||| | ||| | || || || |||| ||||| ||||| || |||||
Sbjct 1427 TTCCAGGGTAATGGTCTTTCCAGTCAATGTTTTGACAAATATTTGCAT 1474
Score = 95.1 bits (104), Expect = 1e-14
Identities = 157/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
||||| || | || | || ||||| | ||||| |||||||| || || || || |
Sbjct 564 CCACCACGAAGACGAAGTACTAAATGCAAAGTAGATTCTTTTTGGATGTTATAGTCCGAC 623
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| ||||| ||| |||| |||||| ||||| |||| | ||||| || || || ||
Sbjct 624 AGAGTGCGGCCATCCTCTAACTGTTTACCAGCAAAGATGAGACGCTGTTGGTCTGGGGGA 683
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066
|||||||||||||| ||| || ||| | | ||||| ||||| | ||| ||
Sbjct 684 ATGCCCTCCTTGTCTTGGATCTTAGCCTTAACATTTTCGATAGTGTCGGATGGCTCCACC 743
Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
|| | || | || || || || ||||| || ||||| ||||||||
Sbjct 744 TCCAAAGTGATGGTCTTCCCAGTAAGAGTCTTAACAAAGATCTGCAT 790
Score = 95.1 bits (104), Expect = 1e-14
Identities = 150/215 (70%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958
||||| || ||||||| ||||| || ||||||||||| ||||| | || || |
Sbjct 2172 CGCAATACTAAATGTAGGGTAGATTCCTTTTGAATATTATAATCAGATAATGTACGGCCA 2231
Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018
|| || || ||||||||||| | || | | ||| ||||| || || || ||||| |||
Sbjct 2232 TCTTCCAGTTGTTTTCCAGCAAAAATAAGCCTCTGTTGATCTGGGGGAATACCCTCTTTG 2291
Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078
|| ||| || ||| | | ||||| ||||| | ||| || || | || |
Sbjct 2292 TCTTGGATCTTTGCCTTCACATTTTCGATAGTGTCGGACGGCTCTACCTCTAAAGTGATG 2351
Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
||||| || || ||||| || ||||| ||||||||
Sbjct 2352 GTTTTTCCTGTAAGAGTCTTAACAAAGATCTGCAT 2386
Score = 89.7 bits (98), Expect = 5e-13
Identities = 156/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
||||| || | |||| || ||||| | |||||||||||||| || ||||| || |
Sbjct 1476 CCACCTCGCAGACGCAGTACTAAATGAAGGGTAGACTCTTTTTGGATGTTGTAGTCAGAC 1535
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| |||||| ||| |||||||| || ||||| |||| | || || ||||| || ||
Sbjct 1536 AGGGTGCGACCATCTTCTAGCTGCTTGCCAGCAAAGATAAGACGTTGTTGATCTGGGGGA 1595
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066
|| ||||| || || || || ||| | | ||| | |||||| | ||| ||
Sbjct 1596 ATACCCTCTTTATCTTGAATCTTAGCCTTTACATTTTCAATGGTGTCAGATGGCTCCACC 1655
Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
|| | || | || ||||| || || || || ||||| || |||||
Sbjct 1656 TCCAGAGTTATAGTCTTGCCTGTTAGTGTCTTGACAAATATTTGCAT 1702
Score = 89.7 bits (98), Expect = 5e-13
Identities = 156/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
||||| || | |||| || | ||| | |||||||| ||||| || ||||| ||
Sbjct 1704 CCACCTCGCAGACGCAGTACTAGATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCAGAG 1763
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| |||||| ||| || | || || ||||| |||| | ||||||||||| || ||
Sbjct 1764 AGGGTGCGACCATCTTCCAATTGCTTACCAGCAAAGATAAGACGCTGCTGATCAGGTGGG 1823
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066
|||||||| ||||| |||||| || | | ||| | || || | || |||
Sbjct 1824 ATGCCCTCTTTGTCTTGGATTTTAGCTTTTACATTTTCAATAGTATCAGAGGGTTCCACT 1883
Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
|| | ||| | || || || || || ||||| ||||||||||||||
Sbjct 1884 TCCAGGGTAATGGTCTTTCCAGTTAGGGTTTTAACAAAAATCTGCAT 1930
>seq259364
Length=501
Score = 95.1 bits (104), Expect = 1e-14
Identities = 118/159 (74%), Gaps = 2/159 (1%)
Strand=Plus/Minus
Query 47412 GGAATGAACGCGGAGATGATGAGAAAGTACATCGAATTTGTCGCCGACCGCCTGCTCGTT 47471
|| |||||||| || | ||| | |||||||||| || |||||||||||||| || |||
Sbjct 453 GGCATGAACGCCGACCTTATGTGCCAGTACATCGAGTTCGTCGCCGACCGCCTTCTTGTT 394
Query 47472 CAGCTAAAGTATCCC-AAGATTTACCACACCGAGAATCCATTCGAGTTTATGAACAACAT 47530
| ||| ||| ||| ||| || | |||| || ||||| || ||| | | ||
Sbjct 393 GCCGTCG-GTAACCCGAAGCACTACAACGCTCAGAACCCGTTCGATTTCATGGAGATGAT 335
Query 47531 TTCGCTCGAGGGCAAGACCAACTTTTTCGAGAAGCGCGT 47569
|| |||| || ||||||||||||||||||||||||||
Sbjct 334 CTCCCTCGCCGGAAAGACCAACTTTTTCGAGAAGCGCGT 296
>seq27511
Length=800
Score = 95.1 bits (104), Expect = 1e-14
Identities = 160/229 (70%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945
|||||| | | |||| |||||| || | ||||| || || |||||||| |||||
Sbjct 444 TCCACCCCTAAGGCGCAGCACCAAGTGCAAAGTAGATTCCTTCTGAATATTATAATCTGA 385
Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005
|| || || ||| || ||||||||||| || | || | | ||| || || |||||
Sbjct 384 CAATGTACGTCCATCTTCCAGCTGTTTTCCTGCAAAAATAAGCCTCTGTTGGTCAGGAGG 325
Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTG-CTTGAGTTGTTCGACGGTGTCCGTACTCTCGA 127064
||||| || |||| | ||| | | || ||| | | ||| | || || | | || |
Sbjct 324 AATGCCTTCTTTGT-CTTGAATCTTTGCCTTAACATTTTCTATTGTATCAGAAGCTTCCA 266
Query 127065 CTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
|||| | || | |||||||| ||||| || ||||||||||| |||||
Sbjct 265 CTTCCAAAGTGATAGTTTTGCCAGTCAGTGTCTTTACAAAAATTTGCAT 217
Score = 87.8 bits (96), Expect = 2e-12
Identities = 156/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945
|||||| | | |||| |||| || | || || || || ||||||||||| ||
Sbjct 672 TCCACCTCTCAGCCGCAGTACCAGGTGCAAAGTTGATTCCTTCTGAATATTGTAGTCAGA 613
Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005
| ||||| ||| || ||||| |||||||| | || | || |||||||| || ||
Sbjct 612 TAGTGTGCGTCCATCTTCAAGCTGCTTTCCAGCAAAAATAAGTCTTTGCTGATCTGGGGG 553
Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065
|| ||||| || ||| |||||| ||| | | ||| | || || | | || ||
Sbjct 552 AATACCCTCTTTATCCTGAATTTTCGCCTTAACATTTTCAATTGTATCAGAAGCTTCCAC 493
Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
||| | || | || ||||| ||||| || ||||||||||| |||||
Sbjct 492 TTCCAAAGTGATAGTCTTGCCAGTCAGTGTCTTTACAAAAATTTGCAT 445
>seq27512
Length=242
Score = 93.3 bits (102), Expect = 4e-14
Identities = 148/210 (70%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 126905 ACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCT 126964
|| ||||||| ||||| ||||| ||||||||||| || | || || ||| ||
Sbjct 19 ACTAAATGTAAAGTAGATTCTTTCTGAATATTGTAGTCTGATAGTGTACGTCCATCCTCA 78
Query 126965 AGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTG 127024
||||| |||||||| | || | | || || || ||||| ||||| ||||| | | ||
Sbjct 79 AGCTGCTTTCCAGCAAAAATAAGCCTTTGTTGGTCTGGAGGAATGCCTTCCTTAT-CTTG 137
Query 127025 ATTTTCTG-CTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTT 127083
| ||| || ||| | | ||||| ||||| | ||| ||||| | || | || ||
Sbjct 138 AATTTTTGCCTTAACATTTTCGATTGTGTCAGAGGGCTCAACTTCCAGTGTGATAGTCTT 197
Query 127084 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
||| ||||| || |||||||| || |||||
Sbjct 198 GCCAGTCAGTGTCTTTACAAATATTTGCAT 227
>seq133356
Length=434
Score = 82.4 bits (90), Expect = 7e-11
Identities = 90/120 (75%), Gaps = 0/120 (0%)
Strand=Plus/Minus
Query 114468 GGCTTCTGTTACATTGGTCGCGGCGACGAAGTCCGCTGCGCCTTTTGCAAGGTCGAAATT 114527
||||||| ||| | || |||||||| ||||| |||||||| ||||| || || ||||||
Sbjct 221 GGCTTCTATTATCTGGGCCGCGGCGATGAAGTACGCTGCGCGTTTTGTAAAGTAGAAATT 162
Query 114528 ATGAATTGGAAACGAGGAGACGATCCGCTCGTCGATCACAAGAGATGGGCGCCTCAATGC 114587
||||| ||| || |||||||| | || ||| || | ||||||||||| |||
Sbjct 161 ATGAAATGGGTTGCGGGCGACGATCCCGCCAAGGACCACCAGCGCTGGGCGCCTCAGTGC 102
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 473853885147920
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