Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heliconius_20pachinus_20[genbank_20GCA_5F900068735.1_202017-04-26]
277,083 sequences; 279,264,790 total letters
Query= NC_013288.1
Length=191761
Score E
Sequences producing significant alignments: (Bits) Value
seq13366 120 4e-22
seq147639 91.5 2e-13
seq170880 89.7 6e-13
>seq13366
Length=6323
Score = 120 bits (132), Expect = 4e-22
Identities = 258/383 (67%), Gaps = 12/383 (3%)
Strand=Plus/Plus
Query 116235 CAAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATT 116294
||| | ||| |||| || | || || ||||| | ||||| || | ||||||||||||
Sbjct 1224 CAACACAAACGCATCTGCCATGCCCTGAACACCAATACCAATAGGTCTATGTCTCATATT 1283
Query 116295 AGACTTTCGAGCGGTCTCC---ACGGGATAAAAATTCCTATCGATAACCCTATTTAGATT 116351
|| || || ||| || ||||||||||| ||| ||||| | |||| |||
Sbjct 1284 TGAAGTTTTTGC---CTCAGGGACAGGATAAAAATTAACATCAATAACTTTGTTTAAATT 1340
Query 116352 TTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTC 116411
|| || |||| |||||||||||| | | |||| ||| ||| ||| | | |||
Sbjct 1341 TTGAGTTACAATCTTTGTGATTTCTTTTAATTTTTTAAAATTAAATCTG---TTATTTTC 1397
Query 116412 ATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATC 116471
| ||| || | ||| || || || || || || ||||| | ||||| |
Sbjct 1398 A---ACAAACATGTTAAGTGCTATGGAAGCAAGGTTGCACACTGCCACTTCATCTTCTGA 1454
Query 116472 AGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTG 116531
|||||| | | || || || || | ||| || ||||| ||||| | || |||||
Sbjct 1455 AGTGTATTGCACAACCTCAGTGCAAAGATTGCTACATTTAATAGTGCCAAGATTTTTTTG 1514
Query 116532 ATTTGACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTG 116591
||| |||| ||||||| |||||||| || | ||| ||||| || || |||||| |||
Sbjct 1515 ATTACTCTTTCTGTTACAAGCATCCTTATACAACATGTATGGTGTACCAGTCTCCACTTG 1574
Query 116592 GGACTTGAGAATAGCCTTCCATA 116614
|| | | ||| | ||||||||
Sbjct 1575 GGCTTCTATAATTGACTTCCATA 1597
>seq147639
Length=1029
Score = 91.5 bits (100), Expect = 2e-13
Identities = 181/267 (68%), Gaps = 12/267 (4%)
Strand=Plus/Minus
Query 12545 CTCATTGAGGAGGTTCGCCAAGTCGGCACCAGAGAAGCCCGTCGTTTGCTTTGCGATGGC 12604
||| ||||| | |||||||| ||||||||| | ||| |||| ||| | |||| |||
Sbjct 265 CTCGTTGAGCACGTTCGCCAGGTCGGCACCGGTGAACCCCGGCGTCT----TGCG--GGC 212
Query 12605 GTGTAGCTTCACATCGTCA------GCCAACTTCTTGTCTCGGGCGTGGACACCCAAAAT 12658
| | |||| | ||| | || | | |||| | ||||| || | | ||
Sbjct 211 GAGGAGCTCGAGGTCGACGCTCGCGGCGAGCGGCTTGCCCTTCGCGTGCACCTCGAGGAT 152
Query 12659 CTTCTCGCGTCCGCGCACACTGGGTAGGGACACGGTGATCTTACGATCAAAGCGACCTGG 12718
|| || ||| || ||| || || | ||| ||||| || || |||||||| ||
Sbjct 151 CTGCTTGCGGCCCTGCAGGCTCGGCGCGTCGACGCCGATCTGGCGGTCGAAGCGACCGGG 92
Query 12719 GCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGCGATGACAACGATGCC 12778
||||||||| ||| ||| ||||| || ||||||||||| ||||||| | || |
Sbjct 91 GCGGAGGAGCGCGGGGTCGAGGATGTCCGGACGGTTCGTCGCGGCGATGAGGATGACGTT 32
Query 12779 CGTCTCGTTATCGAAGCCATCCATCTC 12805
||||| | |||||||| ||||||||
Sbjct 31 CGTCTTGCCGTCGAAGCCGTCCATCTC 5
>seq170880
Length=1133
Score = 89.7 bits (98), Expect = 6e-13
Identities = 277/422 (66%), Gaps = 9/422 (2%)
Strand=Plus/Minus
Query 116856 GATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTGCGACGA---CCAGC 116912
||| || | ||||||||| || ||||| | |||| | ||| ||| ||| |
Sbjct 1086 GATGTCGGGGTGCCACGGCTCAAGGTAGATGGCGAACGCACCCGGGCGCTTGTTCCCACC 1027
Query 116913 CTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATGATACCATCAGA 116972
||||| ||||| | || || ||| || ||||| ||||| || | ||| || | ||
Sbjct 1026 CTGGTCGACATAGCGGGCAGTGTTGTTGAAGACGCGGAGCATGGGCACGATGCCGTTCGA 967
Query 116973 TTGGCCATTTGTCCCCCGAATACGAGACTT--GTTGGCTCTGACATCGTGGATGTGCATA 117030
| || ||||| || | || || ||| | ||| | || | ||| ||||| |
Sbjct 966 GTATCCGTTTGTGCCACCGATGT-AG-CTTCCGGAGGCACGGATGTTGTGAATGTGGAGG 909
Query 117031 CCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCCGTAGATCCCA 117090
|| ||||| || || ||| ||||| |||||| | | || || ||||||| ||
Sbjct 908 CCGATACCGCCGGCGGTCTTGGAGATCATGGCGCACGTCTTCAGGGTGTCGTAGATGCCC 849
Query 117091 TCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGTGGCCTTGGTGTA 117150
||||||||||| |||| | || | ||||||||| || | || || || ||
Sbjct 848 TCGATCGAGTCGTCCTTCATCGCCACGAGGAAGCAAGACGCAAGCTGGGGGTGGGGCGTG 789
Query 117151 CCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATAC-CTTGGGACATCTTATCGTA 117209
||||| ||||||||||| || | || ||| |||| ||| || |||||| | | |||
Sbjct 788 CCAGCATTGAAGAGGGTGGGCGAGGCATGGGTGAA-GTACTTTTCGGACATGTAGTTGTA 730
Query 117210 GGTCTCCAAGACAGAGGGAATGTCTTCCCCGTGAATACCGATTGAGACCCGCATAAACAT 117269
||||| | || | | || | ||||| || ||||| | ||| ||||| | |||
Sbjct 729 CGTCTCGATCGCACGCGTGACGTTGTTGCCGTGGATGCCGATAGCGACGCGCATGAGCAT 670
Query 117270 GT 117271
||
Sbjct 669 GT 668
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 611382294806280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |