Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20pachinus_20[genbank_20GCA_5F900068735.1_202017-04-26] 277,083 sequences; 279,264,790 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq13366 120 4e-22 seq147639 91.5 2e-13 seq170880 89.7 6e-13 >seq13366 Length=6323 Score = 120 bits (132), Expect = 4e-22 Identities = 258/383 (67%), Gaps = 12/383 (3%) Strand=Plus/Plus Query 116235 CAAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATT 116294 ||| | ||| |||| || | || || ||||| | ||||| || | |||||||||||| Sbjct 1224 CAACACAAACGCATCTGCCATGCCCTGAACACCAATACCAATAGGTCTATGTCTCATATT 1283 Query 116295 AGACTTTCGAGCGGTCTCC---ACGGGATAAAAATTCCTATCGATAACCCTATTTAGATT 116351 || || || ||| || ||||||||||| ||| ||||| | |||| ||| Sbjct 1284 TGAAGTTTTTGC---CTCAGGGACAGGATAAAAATTAACATCAATAACTTTGTTTAAATT 1340 Query 116352 TTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTC 116411 || || |||| |||||||||||| | | |||| ||| ||| ||| | | ||| Sbjct 1341 TTGAGTTACAATCTTTGTGATTTCTTTTAATTTTTTAAAATTAAATCTG---TTATTTTC 1397 Query 116412 ATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATC 116471 | ||| || | ||| || || || || || || ||||| | ||||| | Sbjct 1398 A---ACAAACATGTTAAGTGCTATGGAAGCAAGGTTGCACACTGCCACTTCATCTTCTGA 1454 Query 116472 AGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTG 116531 |||||| | | || || || || | ||| || ||||| ||||| | || ||||| Sbjct 1455 AGTGTATTGCACAACCTCAGTGCAAAGATTGCTACATTTAATAGTGCCAAGATTTTTTTG 1514 Query 116532 ATTTGACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTG 116591 ||| |||| ||||||| |||||||| || | ||| ||||| || || |||||| ||| Sbjct 1515 ATTACTCTTTCTGTTACAAGCATCCTTATACAACATGTATGGTGTACCAGTCTCCACTTG 1574 Query 116592 GGACTTGAGAATAGCCTTCCATA 116614 || | | ||| | |||||||| Sbjct 1575 GGCTTCTATAATTGACTTCCATA 1597 >seq147639 Length=1029 Score = 91.5 bits (100), Expect = 2e-13 Identities = 181/267 (68%), Gaps = 12/267 (4%) Strand=Plus/Minus Query 12545 CTCATTGAGGAGGTTCGCCAAGTCGGCACCAGAGAAGCCCGTCGTTTGCTTTGCGATGGC 12604 ||| ||||| | |||||||| ||||||||| | ||| |||| ||| | |||| ||| Sbjct 265 CTCGTTGAGCACGTTCGCCAGGTCGGCACCGGTGAACCCCGGCGTCT----TGCG--GGC 212 Query 12605 GTGTAGCTTCACATCGTCA------GCCAACTTCTTGTCTCGGGCGTGGACACCCAAAAT 12658 | | |||| | ||| | || | | |||| | ||||| || | | || Sbjct 211 GAGGAGCTCGAGGTCGACGCTCGCGGCGAGCGGCTTGCCCTTCGCGTGCACCTCGAGGAT 152 Query 12659 CTTCTCGCGTCCGCGCACACTGGGTAGGGACACGGTGATCTTACGATCAAAGCGACCTGG 12718 || || ||| || ||| || || | ||| ||||| || || |||||||| || Sbjct 151 CTGCTTGCGGCCCTGCAGGCTCGGCGCGTCGACGCCGATCTGGCGGTCGAAGCGACCGGG 92 Query 12719 GCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGCGATGACAACGATGCC 12778 ||||||||| ||| ||| ||||| || ||||||||||| ||||||| | || | Sbjct 91 GCGGAGGAGCGCGGGGTCGAGGATGTCCGGACGGTTCGTCGCGGCGATGAGGATGACGTT 32 Query 12779 CGTCTCGTTATCGAAGCCATCCATCTC 12805 ||||| | |||||||| |||||||| Sbjct 31 CGTCTTGCCGTCGAAGCCGTCCATCTC 5 >seq170880 Length=1133 Score = 89.7 bits (98), Expect = 6e-13 Identities = 277/422 (66%), Gaps = 9/422 (2%) Strand=Plus/Minus Query 116856 GATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTGCGACGA---CCAGC 116912 ||| || | ||||||||| || ||||| | |||| | ||| ||| ||| | Sbjct 1086 GATGTCGGGGTGCCACGGCTCAAGGTAGATGGCGAACGCACCCGGGCGCTTGTTCCCACC 1027 Query 116913 CTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATGATACCATCAGA 116972 ||||| ||||| | || || ||| || ||||| ||||| || | ||| || | || Sbjct 1026 CTGGTCGACATAGCGGGCAGTGTTGTTGAAGACGCGGAGCATGGGCACGATGCCGTTCGA 967 Query 116973 TTGGCCATTTGTCCCCCGAATACGAGACTT--GTTGGCTCTGACATCGTGGATGTGCATA 117030 | || ||||| || | || || ||| | ||| | || | ||| ||||| | Sbjct 966 GTATCCGTTTGTGCCACCGATGT-AG-CTTCCGGAGGCACGGATGTTGTGAATGTGGAGG 909 Query 117031 CCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCCGTAGATCCCA 117090 || ||||| || || ||| ||||| |||||| | | || || ||||||| || Sbjct 908 CCGATACCGCCGGCGGTCTTGGAGATCATGGCGCACGTCTTCAGGGTGTCGTAGATGCCC 849 Query 117091 TCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGTGGCCTTGGTGTA 117150 ||||||||||| |||| | || | ||||||||| || | || || || || Sbjct 848 TCGATCGAGTCGTCCTTCATCGCCACGAGGAAGCAAGACGCAAGCTGGGGGTGGGGCGTG 789 Query 117151 CCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATAC-CTTGGGACATCTTATCGTA 117209 ||||| ||||||||||| || | || ||| |||| ||| || |||||| | | ||| Sbjct 788 CCAGCATTGAAGAGGGTGGGCGAGGCATGGGTGAA-GTACTTTTCGGACATGTAGTTGTA 730 Query 117210 GGTCTCCAAGACAGAGGGAATGTCTTCCCCGTGAATACCGATTGAGACCCGCATAAACAT 117269 ||||| | || | | || | ||||| || ||||| | ||| ||||| | ||| Sbjct 729 CGTCTCGATCGCACGCGTGACGTTGTTGCCGTGGATGCCGATAGCGACGCGCATGAGCAT 670 Query 117270 GT 117271 || Sbjct 669 GT 668 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 611382294806280