Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20pachinus_20[genbank_20GCA_5F900068735.1_202017-04-26] 277,083 sequences; 279,264,790 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq10526 230 2e-55 seq28654 113 3e-20 seq27511 100 2e-16 seq76306 98.7 7e-16 >seq10526 Length=5062 Score = 230 bits (254), Expect = 2e-55 Identities = 849/1307 (65%), Gaps = 46/1307 (4%) Strand=Plus/Plus Query 5817 TTGCCCAAACCGGTGTTCATTGCATTTAAAAGATCACCGTTGTCCGCGTCTATTTCCCAC 5876 || || | ||| ||||||| ||||| | || ||||| || || ||||| | |||||| Sbjct 2931 TTACCGAGACCCATGTTCATGGCATTCAGTAGGTCACCATTATCAGCGTCCACTTCCCAA 2990 Query 5877 GCAAATAAACCACCCAAATTTTTGCTCACTACATACTTACCTTTTGCTACCACCGATTGA 5936 ||||| | |||||| | || || | |||||| ||||| ||| | | || ||| | Sbjct 2991 GCAAAGAGACCACCTAGCTTGTTATTTCTTACATATTTACCCTTTTCAATAACAGATCTA 3050 Query 5937 TCGTTGTCGTACGTAACTAAATCATTATT--ATCGT----AGACGTACGGAGATTGTGCA 5990 | || || || || || | ||| | | || || | || || || | ||| || Sbjct 3051 GCATTATCATAGGTTACAAGATCTCCAGTTGATGGTCTGAAAACATAGGGGGCTTGGGCG 3110 Query 5991 ATGTTATCATA---GAATTGTACACTTTCGTCGTACCTATTTA-----CAATATCTTTAT 6042 | || || || ||| | ||||| | | | | | |||| |||| || | | Sbjct 3111 ACATTGTCGTAATGGAACTCC-CACTTGCCTTG-AGCAATTTCATTCGCAATCTCCCTGT 3168 Query 6043 AATCGATTACGCCGCTTTCCCATGTACCTTTAACGGGAGCGCTAGCTATTCCTGTAAACG 6102 | || | || ||| || ||| || ||||| || || | |||| | ||||| || | Sbjct 3169 AGTCAACCACTCCGTCTTGCCAAGTTCCTTTGACAGGTCCAGTAGCGTTGCCTGTGAAGG 3228 Query 6103 GATTATTGTTTTCG-ACTCGATGCACACCGCTCCAGCCGCGTCCATACATAGCCACACCT 6161 || | |||| |||| | || ||| || || ||||||| || ||||||||||| |||||| Sbjct 3229 GAATGTTGTCTTCGTAATC-ATGAACGCCAGTCCAGCCACGACCATACATAGCAACACCT 3287 Query 6162 ACTACTAATTTAGTCGAATCGACATTTTGATTTAACAA-TCTGTTAATAGCAAAATGGGT 6220 ||||| | || | | || || || | ||| | | ||| | |||| | | Sbjct 3288 ACTACAATCTTCTTAGGATTCACTCCCTGCGCCAGCAAGTATTTTACTC-CAAAGTCAGA 3346 Query 6221 TGTGTAATTTTCGTTAACGTCCCACGAAGGAGCGTAAAGCGGTGTTTGAAAACCCAAATT 6280 ||||||| |||| || | ||||| ||| ||||| | || |||||| || | | | Sbjct 3347 TGTGTAAGTTTCCTTGGGATTCCACGCAGGCGCGTACAATGGCGTTTGATGTCCAAGAGT 3406 Query 6281 TTCCATGGACCAAGCGCCTTTAAAATCGTAGGTCATTACAAATATATAATCGAGATAGCG 6340 || | ||||| || || || || ||||| |||| | || |||| ||| | ||| Sbjct 3407 ATCATTTGACCAGGCTCCCTTGAAGTCGTAACTCATCAAGAAAATATGATCCATATAATT 3466 Query 6341 TTGCGCGTCTGTATAATCGACAACGTCGATTTTGTCGTAACCGGCACCGATAGCGCTAGT 6400 ||| || | ||| || ||||| | |||||| || | || || | ||||| ||| Sbjct 3467 TTGAGCCTTACCATAGTCAACAACTTGGATTTTATCCCATCCAGCGCTAATAGCAGAAGT 3526 Query 6401 TAGTTGCAATCGTTTACCTCTCtttttttCCAATTTGTTGAGCATTTCGCGTAACTCCTT 6460 || || || ||||| |||| | | | |||||| || ||||| || || Sbjct 3527 TAATTCGTATTTCTTACCATTCTTAGCAGAGAGCTCATCGAGCATCTCACGTAATTCTTT 3586 Query 6461 TAAAAGTATTGTATATGTTTTGCGATCCACTGAAGCGTTGCCCAGCGACGGGTTGGCACC 6520 | | || ||| | | ||| ||| | | || || ||||| ||||| Sbjct 3587 CATCAAACTTACATAACAATCACCATCTTCTGG---GCTACCGAGGTCAGGGTTAGCACC 3643 Query 6521 TTTACCGCCCGGAAACTCCCAATCTATGTCGACGCCGTCGAAAAATTTCCACGTTTCCAA 6580 ||| || || || ||||||||||| || || || || ||||| |||||||| ||| | Sbjct 3644 TTTGCCACCAGGGAACTCCCAATCGATATCAACACCATCGAAGAATTTCCATGTTAGAAG 3703 Query 6581 AAATTCGCGCACACTATCAACAAA-CGTATTTCGTTTTTCGAC--GTCGTTTAACTGGTA 6637 ||| || || | ||||| ||| || | || || ||| ||| | | Sbjct 3704 AAACTCCTTTACTGACTGCACAAATCGTGTTC---TCTTAGATTTGTCAACTAAAAAGAA 3760 Query 6638 AAACGGATCGCTAAGCGTCCATCCGCCTATCGATGGCAATATTGTTAAATCTGGATTGTG 6697 || |||||| ||||||||| || || || || || | || | || || || | | Sbjct 3761 GAAAGGATCGGCAAGCGTCCACCCACCAATAGAGGGAAGAATCTTCAATTCAGG---GCG 3817 Query 6698 GCGCTTGATC----GCCATTAACTGTCCAAAGTTTCCTTTGTACGGTTCGTTGTAGGCCT 6753 | ||||| | | |||||| || |||||||| |||||||| || ||||| | | Sbjct 3818 G-GCTTGTTTTAGTGACATTAATTGGCCAAAGTTGCCTTTGTAGGGCTCGTTCCATGAA- 3875 Query 6754 CGACA--CCTTTTTGTGGTTTTTGAAGCGCTCCCCATATATCATGAATGGTTACTTTGAA 6811 |||| ||||||||||||||||| | ||| ||||| ||| || || | |||||||| Sbjct 3876 -GACAATCCTTTTTGTGGTTTTTGTAATGCTGCCCATGGATCGTGGATTGAGACTTTGAA 3934 Query 6812 ATCTTTTCGGCCGGCGCACGATTTTTGCAACGCCTC-AAACGAACTGGGTATTTGTTGTT 6870 || | |||||| || ||| || | || | |||| || | || | || | Sbjct 3935 GTCCTCACGGCCGCTACAGGATCGCTGTAGTGCTTGGAAACTGCCTTCG-ATCTCTT--T 3991 Query 6871 TAAGCGCATCGTTTACACCATCGCCGCCACAAATTGGTATAAACCCGTACAACAAATGTG 6930 ||| | ||| || | || || ||||| |||||||| ||||| ||||| | |||||| | Sbjct 3992 TAAACT-ATCATTAATGCCGTCACCGCCGCAAATTGGAATAAAGCCGTAGAGCAAATGAG 4050 Query 6931 TAAGATTAGGAATGGGAATTTTGTCGGCGGGATATTGTCTATCGTAAACACCCCATTCCA 6990 |||||||||| || || || || |||| ||| ||| || ||||||||||| | Sbjct 4051 TAAGATTAGGTATAGGTATACGATCCACGGGGAATTTCCTAGGATAGACACCCCATTCTA 4110 Query 6991 CAAAGTAAGCGCCCACAACATTATCGGTAATTTTTTCGAACGGTACATTGTTTTCCGACC 7050 | ||||| || |||||||| || | | ||| | |||||| ||| ||||| | Sbjct 4111 CGAAGTAGGCACCCACAACTTTTCCAGATGTTTGCTTGAACGGCTTATTTTTTTCTCCCA 4170 Query 7051 ACATATATTTTATAGGATTTAAATGCGAACCGTCTGTATCGGCCACG 7097 | |||||| | |||| |||||| || || |||||||||||| Sbjct 4171 ATGTATATTCCAGAGGAGGTAAATGACTTCCATCGGTATCGGCCACG 4217 >seq28654 Length=3315 Score = 113 bits (124), Expect = 3e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || | ||||| |||||| || | ||| ||||||||| |||||||| || | Sbjct 2388 CCACCACGAAGACGCAATACCAAGTGAAGAGTAGATTCTTTTTGAATATTATAGTCAGAA 2447 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | | |||| | || |||||||| || || | ||||| ||||| || ||||| | || Sbjct 2448 AGAGTGCGTCCGTCTTCCAATTGCTTTCCAGCGAAAATCAAACGTTGTTGATCTGGAGGA 2507 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | |||||| ||||| ||||| ||| | | | | || || | ||| || Sbjct 2508 ATGCCTTCCTTGTCTTGAATTTTGGCTTTTACATTTTCAATAGTATCGGAAGGTTCAACT 2567 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 ||||||||||| ||||||||||| | ||||| || ||||||||||| Sbjct 2568 TCCAAAGTAATGGTTTTACCCGTAAGTGTTTTCACAAAGATCTGCAT 2614 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || |||| ||||| ||||| || |||||||| ||||||||| || || || || | | Sbjct 1932 CCACCTCTTAAACGAAGTACTAAGTGCAAAGTAGATTCTTTTTGGATGTTGTAGTCAGAC 1991 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | || |||| || ||||| || || ||||||| | ||| || ||||||| || Sbjct 1992 AGTGTACGACCATCTTCTAATTGCTTGCCCGCAAAAATAAGACGTTGTTGATCCGGAGGA 2051 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | |||||||||||| ||||| ||| | | | | |||||| | ||| || Sbjct 2052 ATGCCTTCTTTGTCTTGGATTTTAGCTTTCACATTTTCAATTGTGTCAGAAGCTTCAACT 2111 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || |||||||||||||| || || | ||||| || ||||| ||||| Sbjct 2112 TCTAAAGTAATTGTTTTTCCAGTGAGTGTTTTAACAAAGATTTGCAT 2158 Score = 96.9 bits (106), Expect = 2e-15 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || | ||| ||||| ||||||||||| ||||||||| || ||||| || | | Sbjct 564 CCACCACGAAGACGAAGTACTAAATGCAAAGTAGATTCTTTTTGGATGTTATAGTCCGAC 623 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | | ||| |||| || || ||||| || |||| || | |||||| || || | ||| Sbjct 624 AGAGTGCGGCCATCCTCTAACTGTTTACCAGCAAAGATGAGACGCTGTTGGTCTGGGGGA 683 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTA--ATCGTCGCTACTGTGTCTGCGCTTTCCA 39670 | ||| || ||||| || || ||| || ||| || ||||| | |||| Sbjct 684 ATGCCCTCCTTGTCTTGGATCTTAGCCTTAACATTTTCGATA--GTGTCGGATGGCTCCA 741 Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 | |||||||| || || || || || | ||| || || ||||||||||| Sbjct 742 CCTCCAAAGTGATGGTCTTCCCAGTAAGAGTCTTAACAAAGATCTGCAT 790 Score = 95.1 bits (104), Expect = 8e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || ||||| ||||| | |||||| ||||||||| ||||| || |||||||| || | Sbjct 792 CCTCCTCGTAAACGTAATACCAAGTGCAAAGTGGACTCTTTCTGAATATTATAGTCAGAG 851 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | | || |||| |||| || || || | ||||| | ||| || ||||| | ||| Sbjct 852 AGAGTACGGCCATCCTCCAGCTGCTTGCCAGCGAAAATGAGACGTTGTTGATCTGGGGGA 911 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | || |||||||| || || ||||| | | | ||||||| | ||| || Sbjct 912 ATACCCTCTTTGTCTTGGATCTTAGCTTTAACATTTTCAATAGTGTCTGAGGGTTCAACT 971 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || || || || ||||| || || | || ||||| ||||||||||| Sbjct 972 TCTAATGTGATAGTTTTCCCTGTCAGTGTCTTTACAAAGATCTGCAT 1018 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || ||||||| ||||||||| | ||| | || || ||||| || || || || | Sbjct 1704 CCACCTCGCAGACGCAGTACTAGATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCAGAG 1763 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | ||| |||| |||||||| || || |||| || | |||||||||||| | || Sbjct 1764 AGGGTGCGACCATCTTCCAATTGCTTACCAGCAAAGATAAGACGCTGCTGATCAGGTGGG 1823 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | ||| |||||||| ||||| ||| | | | | || || | | |||||| Sbjct 1824 ATGCCCTCTTTGTCTTGGATTTTAGCTTTTACATTTTCAATAGTATCAGAGGGTTCCACT 1883 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 |||| ||||| || || || |||| ||||| || || |||||||| Sbjct 1884 TCCAGGGTAATGGTCTTTCCAGTTAGGGTTTTAACAAAAATCTGCAT 1930 >seq27511 Length=800 Score = 100 bits (110), Expect = 2e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 39505 CGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCA 39564 ||||| ||||| |||||||| ||| || || ||||||||||| | ||| ||| || Sbjct 431 CGCAGCACCAAGTGCAAAGTAGATTCCTTCTGAATATTATAATCTGACAATGTACGTCCA 372 Query 39565 TCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTG 39624 || |||| ||||| || ||||||| | | ||| || || | || | |||||||||| Sbjct 371 TCTTCCAGCTGTTTTCCTGCAAAAATAAGCCTCTGTTGGTCAGGAGGAATGCCTTCTTTG 312 Query 39625 TCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATT 39684 || || ||| |||| | ||| ||| || | |||||| |||||||| || Sbjct 311 TCTTGAATCTTTGCCTTAACATTTTCTATTGTATCAGAAGCTTCCACTTCCAAAGTGATA 252 Query 39685 GTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 ||||| || || | || ||||| || || ||||| Sbjct 251 GTTTTGCCAGTCAGTGTCTTTACAAAAATTTGCAT 217 >seq76306 Length=316 Score = 98.7 bits (108), Expect = 7e-16 Identities = 152/217 (70%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 39504 ACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTC 39563 ||||| || || |||||||| ||| || || |||||||| || | ||| ||| | Sbjct 272 ACGCAAAACTAAGTGCAAAGTAGATTCCTTCTGGATATTATAGTCTGACAATGTGCGCCC 213 Query 39564 ATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTT 39623 ||| |||| ||| || ||| | ||||| | | || ||||| | || | |||||| || Sbjct 212 ATCTTCCAGTTGCTTTCCGGCGAAAATCAGTCTTTGTTGATCTGGAGGAATGCCTTCCTT 153 Query 39624 GTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAAT 39683 ||| || ||| || | | | | ||| || | |||||| ||||| || || Sbjct 152 GTCTTGAATCTTTGCCTTTACGTTTTCGATTGTATCAGAAGCTTCCACTTCCAATGTGAT 93 Query 39684 TGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 ||||| || |||||||||||||||||||| |||||| Sbjct 92 GGTTTTCCCAGTTAAAGTTTTTACGAAGATTTGCATG 56 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346196550554939