Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heliconius_20pachinus_20[genbank_20GCA_5F900068735.1_202017-04-26]
277,083 sequences; 279,264,790 total letters
Query= NC_014458.1
Length=59598
Score E
Sequences producing significant alignments: (Bits) Value
seq84152 385 2e-102
seq134864 203 1e-47
seq231474 125 3e-24
seq12676 105 3e-18
seq189415 93.3 2e-14
seq20617 89.7 2e-13
seq171065 87.8 7e-13
seq47396 82.4 3e-11
>seq84152
Length=5826
Score = 385 bits (426), Expect = 2e-102
Identities = 568/794 (72%), Gaps = 33/794 (4%)
Strand=Plus/Plus
Query 53663 GTCGACCTGTCTCACTCCCCGAAGTGGCGGGAGCAGCTCGGCACGCTGGGCGGCGGCAAT 53722
|||||||| ||||| ||||||||| ||||||||||| |||| |||||||||||
Sbjct 4698 GTCGACCTCGGGCACTCGAAGAAGTGGCGTGAGCAGCTCGGGTCGCTCGGCGGCGGCAAC 4757
Query 53723 CACTTCATCGAGCTGTGCCTCGACCACCTCGACCGCGTGTGGTTGTTCCTGCACTCCGGT 53782
|||||||||||||||||||||||| | ||| || |||||| |||||||||||||||||
Sbjct 4758 CACTTCATCGAGCTGTGCCTCGACGAGTCCGATCGGGTGTGGATGTTCCTGCACTCCGGT 4817
Query 53783 TCGCGTGGCGTCGGTAACAAGATCGCGCAGAAGCACATTCAGGCCGCGCAGG-GCTATTG 53841
||||| || ||||| ||| |||||||||| ||||| | ||||||| ||| |
Sbjct 4818 TCGCGGGGTGTCGGCAACCGGATCGCGCAGCGACACATCGCGATCGCGCAGAAGCTG--G 4875
Query 53842 CCTCGCCAATGGGCTGCACGTGCCACACAA---GGATCTGGCGTACCT--CGTC-GAGGG 53895
|| | || ||| ||||| | || ||| || |||||||| |||| |||
Sbjct 4876 CCAGG--AAGTGGCACATCGTGCTCCCGAACCCGGACCTCGCGTACCTGCCGTCCGAG-- 4931
Query 53896 CACGGTCGAGTTCGACCGCTACCTCGTTGAATTACGTTGGGCGCAGCGGTTTGCGTACTA 53955
||| ||| |||| |||||| || | ||||| |||||||| ||| | |
Sbjct 4932 -ACGCCGGAGCTCGAGGTGTACCTCCGGGATCTGGCGTGGGCACAGCGGTTCGCGCTCGA 4990
Query 53956 CAACCGCGCCGAAATGATGGACCGATTCGAGCAGGCGTTCCGCCATTGGGTCGGCGCCGA 54015
|||||||| || |||||||| || ||| |||||||||| || ||||| || |||
Sbjct 4991 GAACCGCGCTGAGATGATGGATCGCTTCCGGCAGGCGTTCGCGCACTGGGTAGGTCACGA 5050
Query 54016 CCA-GNNNNNNNNNNNNNNNNNNNNNACC--ATCAACGCGCACCACAACTACAC--GCAG 54070
| | | | |||||| | |||||||||||||| | |
Sbjct 5051 CGGTGACCCGGCCGAGCTCGAGACCGAGCGGATCAACACCCACCACAACTACACCGTCCG 5110
Query 54071 AAGGAGCGGCACGGCGACCGTGACGTGTGGTTGACCCGTAAGGGTGCGATCGACGCGAAC 54130
| ||||| ||||||| | ||||||||| ||||||| |||||||||||||||||| ||
Sbjct 5111 A--GAGCGACACGGCGGCAAGGACGTGTGGCTGACCCGCAAGGGTGCGATCGACGCGCAC 5168
Query 54131 GAGGGTGTGCGGGGCCTGATTCCGGGCTCGATGGGCACCTGTTCGTATGTCGTGACCGGC 54190
||||||||||||||| | || |||||||||||||| || | || || |||||||||||
Sbjct 5169 GAGGGTGTGCGGGGCATCATCCCGGGCTCGATGGGGACGCGGTCCTACATCGTGACCGGC 5228
Query 54191 AAGGGCAATCCCGAGGCG--TTGTGCTCGGCGCCGCACGGTGCGGGCCGCCGGTTCTCGC 54248
||||| | | | |||| |||| |||||||||||||| ||||| || |||||||| |
Sbjct 5229 AAGGG--ACACGGCGGCGGTCTGTGTTCGGCGCCGCACGGCGCGGGGCGTCGGTTCTCAC 5286
Query 54249 GCACGAAGGCACGCAAG---CTGTTCACGGTCGACGACCTCGAAG-CGCGTATGACGGGC 54304
| | |||| |||| | || ||| | | ||| ||||| | |||| ||||| ||
Sbjct 5287 GGGCCGAGGC---CAAGCGTCGGTACACCGAGGCCGATCTCGAGGCCGCG-ATGACCGGG 5342
Query 54305 ATCGAGTACCGCAAGGGCGAGGCGTGGGTCGATGAGATTCCCGACGCTTACAAGCCGATC 54364
||||||||||| | || | || |||| |||| ||||| || | || |||||| |||
Sbjct 5343 ATCGAGTACCGGCACGGGGCGGAGTGGATCGACGAGATCCCGCAGGCGTACAAGAGCATC 5402
Query 54365 GACGTTGTGATGCACGACGCCGAAACGCTGGTGTCGGTGGATGCCGAGCTGCGCCAGCTC 54424
||||| |||||| ||||||||| || |||||| | || | ||||| ||| |
Sbjct 5403 GACGTCGTGATGGCCGACGCCGAGCGCCTCGTGTCGATCGACCACACCCTGCGTCAGGTG 5462
Query 54425 TTGAACGTCAAGGG 54438
| ||||| |||||
Sbjct 5463 CTCAACGTGAAGGG 5476
Score = 149 bits (164), Expect = 2e-31
Identities = 162/215 (75%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 53285 CTGATCAACTTTGCGAGCGAGGTCGACGACCAGACGCTTGCGCAGGCGCAGCAGATCGCC 53344
||| ||||||| || |||| ||||||| ||||| | | ||||| || ||| |||
Sbjct 4379 CTGCTCAACTTCGCCTCCGAGATCGACGAGAAGACGATCGACCAGGCCAAGGAGACCGCA 4438
Query 53345 GATCTGCCTTTCGTTTATCCGCATGTGGCGCTGATGCCTGATGCGCATTTCGGTAAGGGC 53404
| ||||| ||||| | ||||| |||||| ||||||| |||||||| | ||| |||||
Sbjct 4439 GCGCTGCCCTTCGTGCACCCGCACGTGGCGTTGATGCCGGATGCGCACTACGGCAAGGGA 4498
Query 53405 AGCAGTGTCGGCACGGTGATCCCGACCGAGGGCGCTGTGATCCCGGCGGCCGTCGGCGTC 53464
| ||||| || || |||||||| | | ||| || |||||||| || ||||| |||
Sbjct 4499 TCCGCGGTCGGTACCGTCATCCCGACGGTCGACGCCGTCATCCCGGCCGCGGTCGGGGTC 4558
Query 53465 GATATTGGCTGCGGCATGATCGCAGCCCGCACCAC 53499
|| || || |||||||||||||| | ||| |||||
Sbjct 4559 GACATCGGGTGCGGCATGATCGCCGTCCGGACCAC 4593
>seq134864
Length=649
Score = 203 bits (224), Expect = 1e-47
Identities = 433/642 (67%), Gaps = 27/642 (4%)
Strand=Plus/Minus
Query 53752 CGACCGCGTGTGGTTGTTCCTGCACTCCGGTTCGCGTGGCGTCGGTAACAAGATCGCGCA 53811
|| |||| | |||||||||||||||||||| || || || ||||| ||| |||||| ||
Sbjct 625 CGGCCGCATCTGGTTGTTCCTGCACTCCGGGTCCCGCGGTGTCGGCAACCGGATCGCCCA 566
Query 53812 GAAGCACATTCAGGCCGCGCAG--GGCTATTGCCTCGCCAATGGGCTGCACGTGCCACAC 53869
| | ||||| || || | | | | || | | | ||| ||| | | || || |
Sbjct 565 GCACCACATCGGGGTTGCCCGGAAGTCGATGG--TGGACAACGGGATCGAGCTGGCAGAT 508
Query 53870 AAGGATCTGGCGTACCTCGTCGAGGGCACGGTCGAGTTCGACCGCTACCTCGTTGAATTA 53929
||||| |||||||| || |||||||| | ||||||||| |||||| | || |
Sbjct 507 CGCGATCTCGCGTACCTGGTGGAGGGCACCGAGGAGTTCGACGCCTACCTGGCCGAGCTC 448
Query 53930 CGTTGGGCGCAGCGGTTTGC-GTACTACAACCGCGCCGAAATGATGGACCGATTCGAGCA 53988
||||| |||| ||| || | ||| |||||||| ||| |||||||| || ||| ||
Sbjct 447 ACCTGGGCACAGCAGTTCGCCGCACT-CAACCGCGACGAGATGATGGAGCGTGTCGTGCG 389
Query 53989 GGCGTTCCGCCATTGGGTCGGCGCCGACCAGNNNNNNNNNNNNNNNNNNNNNACCATCAA 54048
| | | | ||| ||||||| || | ||| ||
Sbjct 388 GTCACTGCAGTTCTGGATCGGCGCGGAGGTGGAGGTGTCCGAGG--------ACC-TCGG 338
Query 54049 CGCGCACCACAACTACACG---CAGAAGGAGCGGCACGGCGACCGTGACGTGTGGTTGAC 54105
| ||||||||||||||| | || || ||||| || | || ||||| || |
Sbjct 337 CTGCCACCACAACTACACGGCCCGCGAGACGCACCACGGTGAGC-TGC--TGTGGGTGTC 281
Query 54106 CCGTAAGGGTGCGATCGACGCGAACGAGGGTGTGCGGGGCCTGATTCCGGGCTCGATGGG 54165
||| |||||||| ||| |||| | | || || | || ||||| ||||| ||||||||
Sbjct 280 CCGCAAGGGTGCCATCAACGCCGAGGTCGGCGTCCCCGGGCTGATCCCGGGGTCGATGGG 221
Query 54166 CACCTGTTCGTATGTCGTGACCGGCAAGGGCAATCCCGAGGCGT---TGTGCTCGGCGCC 54222
|| ||||| |||||| |||||| ||| || |||| || ||||| || ||
Sbjct 220 TACGGCGTCGTACGTCGTGTCCGGCAGGGGGAA---CGAGCAGTCCCTGTGCAGTGCACC 164
Query 54223 GCACGGTGCGGGCCGCCGGTTCTCGCGCACGAAGGCACGCAAGCTGTTCACGGTCGACGA 54282
|||||| || ||||| | |||||| |||||||| |||||| ||||||||||||||
Sbjct 163 GCACGGAGCAGGCCGGGCCTACTCGCGGACGAAGGCGCGCAAGACCTTCACGGTCGACGA 104
Query 54283 CCTCGAAGCGCGTATGACGGGCATCGAGTACCGCAAGGGCGAGGCGTGGGTCGATGAGAT 54342
||| ||| ||| || |||||||||||| | ||||||| ||||| |||||
Sbjct 103 CCTGCGGGCGGCGATGGTCGGGATCGAGTACCGCGACACGGAGGCGTTCGTCGACGAGAT 44
Query 54343 TCCCGACGCTTACAAGCCGATCGACGTTGTGATGCACGACGC 54384
|||| ||| |||||| |||||| |||||| ||| ||
Sbjct 43 CCCCGGCGCCTACAAGGACATCGACCAGGTGATGGCCGATGC 2
>seq231474
Length=516
Score = 125 bits (138), Expect = 3e-24
Identities = 325/491 (66%), Gaps = 21/491 (4%)
Strand=Plus/Plus
Query 53753 GACCGCGTGTGGTTGTTCCTGCACTCCGGTTCGCGTGGCGTCGGTAACAAGATCGCGCAG 53812
|||||||| ||| |||||||||||||||| || || |||||||| ||||||||||| |||
Sbjct 7 GACCGCGTCTGGCTGTTCCTGCACTCCGGCTCCCGCGGCGTCGGCAACAAGATCGCCCAG 66
Query 53813 AAGCACATTCAGGCCGCGCAGGGCTATTGCCT-CGCCAATGGGCTGCACGTGCCACACAA 53871
| ||||| ||| |||| | | |||| ||| ||| | || |||| ||
Sbjct 67 CACCACATCAAGGTCGCGAGCGACCTGTGCCGACGCTGGTGGATCG-ACCTGCCCGACCC 125
Query 53872 GGATCTGGCGTACCTCGTCGAGGGCACGGTCGA---GTTCGACCGCTACCTCGTTGAATT 53928
|| || || ||||| || ||||| || ||| |||| |||| || || |
Sbjct 126 CGACCTCGCCTACCTGGTGGAGGG---GGACGACACGTTCTGGGCCTACATCCGCGAGAT 182
Query 53929 ACGTTGGGCGCAGCGGTTTGCG-TACTACAACCGCGCCGAAATGATGGACCGATTCGAGC 53987
|| ||||| |||| || || | || |||||||| || |||||| |||| || ||
Sbjct 183 GCGGTGGGCCCAGCACTTCGCCCTGCT-CAACCGCGAGGAGATGATGCACCGCGTCCAGG 241
Query 53988 AGG-CGTTCCGCCATTGGGTCGGCGCCGACCAGNNNNNNNNNNNNNNNNNNNNNACCATC 54046
||| ||| || | | | ||||| |||| || |||
Sbjct 242 AGGTCGTCGCGG-ACGAGCTGGGCGC-GACC--------GTGCAGGCGGACGAGACGATC 291
Query 54047 AACGCGCACCACAACTACACGCAGAAGGAGCGGCACGGCGACCGTGACGTGTGGTTGACC 54106
||| |||||||||||||| || ||||| || || || |||||| || ||
Sbjct 292 AACTGCCACCACAACTACACCGAGCGCGAGCGCGTGTTCGGTCGCGAGGTGTGGGTGTCC 351
Query 54107 CGTAAGGGTGCGATCGACGCGAACGAGGGTGTGCGGGGCCTGATTCCGGGCTCGATGGGC 54166
|| ||||| |||||| ||| | |||||| || || ||||| || ||||||||||||
Sbjct 352 CGCAAGGGCGCGATCCGTGCGGGCAAGGGTGATCGCGGGCTGATCCCCGGCTCGATGGGC 411
Query 54167 ACCTGTTCGTATGTCGTGACCGGCAAGGGCAATCCCGAGGCGTTGTGCTCGGCGCCGCAC 54226
|| ||||| ||||| || ||| |||| | || | || || ||||| ||||||
Sbjct 412 ACGGCGTCGTACGTCGTCACGGGCCTGGGCTACCCGCCGTCGCTGATGTCGGCCCCGCAC 471
Query 54227 GGTGCGGGCCG 54237
|| || |||||
Sbjct 472 GGGGCCGGCCG 482
>seq12676
Length=358
Score = 105 bits (116), Expect = 3e-18
Identities = 131/177 (74%), Gaps = 2/177 (1%)
Strand=Plus/Plus
Query 53307 TCGACGACCAGACGCTTGCGCAGGCGCAGCAGATCGCCGATCTGCCTTTCGTTTATCCGC 53366
||||||||| ||||| |||||||| |||||| |||||| || |||| | |||
Sbjct 123 TCGACGACCTCACGCTCGCGCAGGCCAAGCAGACCGCCGAGCTCGACATCGTGTCGCCGT 182
Query 53367 ATGTGGCGCTGATGCCTGATGCGCATTTCGGTAAGGGCAGC-AGTGTCGGCACGGTGATC 53425
| ||||||||||||| || ||||| | || ||||| ||| | ||||| | || |||
Sbjct 183 ACCTGGCGCTGATGCCGGACGCGCACCTGGGCAAGGG-AGCGACGGTCGGTTCCGTCATC 241
Query 53426 CCGACCGAGGGCGCTGTGATCCCGGCGGCCGTCGGCGTCGATATTGGCTGCGGCATG 53482
|| ||| || ||| | |||||||| || ||||| || || || |||||||| |||
Sbjct 242 CCCACCAGGGACGCGATCATCCCGGCCGCGGTCGGGGTGGACATCGGCTGCGGGATG 298
>seq189415
Length=2896
Score = 93.3 bits (102), Expect = 2e-14
Identities = 89/114 (78%), Gaps = 0/114 (0%)
Strand=Plus/Minus
Query 37640 TGCGCGCAGACCGACCCCGAAATCTTCTTTCCAGAGCAGGGCGGCAGCACCCGCGAGGCC 37699
|||||||||||||||||||| ||||| || ||| |||||||| ||||||||||||
Sbjct 551 TGCGCGCAGACCGACCCCGAGGCGTTCTTCCCCGAGAAGGGCGGCTCGACCCGCGAGGCC 492
Query 37700 AAGCGCATTTGCGGCGGCTGCCAGGTGGCCGACGAGTGTCTCACGTGGGCGCTG 37753
|||||||| ||| |||||| ||||| | ||||| ||| || ||||||
Sbjct 491 AAGCGCATCTGCCAGGGCTGCGAGGTGAAGGCGGAGTGCCTCGAGTACGCGCTG 438
>seq20617
Length=36039
Score = 89.7 bits (98), Expect = 2e-13
Identities = 105/142 (74%), Gaps = 0/142 (0%)
Strand=Plus/Minus
Query 38533 ATCGAGTGCATCGACATCACCGAGCACATGGGGTTTTGCCTCGGCAACGCCACCAAATAC 38592
|||||||||||||| |||||| |||||||| || ||| | |||||||| | || |||
Sbjct 28194 ATCGAGTGCATCGAGATCACCAAGCACATGAACTTCTGCTTGGGCAACGCGATGAAGTAC 28135
Query 38593 GTCTGGCGTTGCGACCTCAAGCACGACGCAATCGAGGACTTACGTAAGGCAATTCAGTAC 38652
||||||| | |||||| |||| | ||||| | || ||||| | ||||||
Sbjct 28134 ATCTGGCGCGCTGGGCTCAAGGGCGACAGTGTGGAGGATCTGCGCAAGGCCAAGCAGTAC 28075
Query 38653 ATCGAGTTTGAAATCGCCCGGC 38674
||||| || || |||| |||||
Sbjct 28074 ATCGACTTCGAGATCGACCGGC 28053
>seq171065
Length=1298
Score = 87.8 bits (96), Expect = 7e-13
Identities = 78/98 (80%), Gaps = 0/98 (0%)
Strand=Plus/Plus
Query 38536 GAGTGCATCGACATCACCGAGCACATGGGGTTTTGCCTCGGCAACGCCACCAAATACGTC 38595
||||||||||| ||||||||||||||||| | |||||||||| | ||| ||||||
Sbjct 65 GAGTGCATCGAGATCACCGAGCACATGGGCTACCTGCTCGGCAACGTGATCAAGTACGTC 124
Query 38596 TGGCGTTGCGACCTCAAGCACGACGCAATCGAGGACTT 38633
||||| |||| ||||| ||| ||| | ||||||||
Sbjct 125 TGGCGCGCCGACATCAAGGGCGAGGCACTGGAGGACTT 162
>seq47396
Length=7053
Score = 82.4 bits (90), Expect = 3e-11
Identities = 59/68 (87%), Gaps = 0/68 (0%)
Strand=Plus/Plus
Query 1000 GTAGCTCAATTGGCAGAGCAGCGGTCTCCAAAGCCGCCGGTTGCACGTTCGAGTCGTGCC 1059
||||||||| |||||||||||||||||||||| |||| ||||||| |||| |||| || |
Sbjct 4059 GTAGCTCAACTGGCAGAGCAGCGGTCTCCAAAACCGCAGGTTGCAGGTTCAAGTCCTGTC 4118
Query 1060 GCGCCCGC 1067
|| || ||
Sbjct 4119 GCCCCTGC 4126
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 189964883587760
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