Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20pachinus_20[genbank_20GCA_5F900068735.1_202017-04-26] 277,083 sequences; 279,264,790 total letters Query= NC_014459.1 Length=59798 Score E Sequences producing significant alignments: (Bits) Value seq84152 410 5e-110 seq134864 239 2e-58 seq189415 98.7 4e-16 seq20617 86.0 2e-12 >seq84152 Length=5826 Score = 410 bits (454), Expect = 5e-110 Identities = 571/792 (72%), Gaps = 29/792 (4%) Strand=Plus/Plus Query 54375 GTCGACCTGTCGCACTCCCCGAAGTGGCGGGAGCAGCTCGGCACGCTGGGCGGCGGCAAT 54434 |||||||| |||||| ||||||||| ||||||||||| |||| ||||||||||| Sbjct 4698 GTCGACCTCGGGCACTCGAAGAAGTGGCGTGAGCAGCTCGGGTCGCTCGGCGGCGGCAAC 4757 Query 54435 CACTTCATCGAGCTGTGCCTCGACCACCTCGACCGGGTGTGGTTGTTCCTGCACTCCGGT 54494 |||||||||||||||||||||||| | ||| ||||||||| ||||||||||||||||| Sbjct 4758 CACTTCATCGAGCTGTGCCTCGACGAGTCCGATCGGGTGTGGATGTTCCTGCACTCCGGT 4817 Query 54495 TCTCGTGGTGTCGGTAACAAGATCGCGCAGAAGCACATTCAGGCCGCGCAGG-GCTATTG 54553 || || |||||||| ||| |||||||||| ||||| | ||||||| ||| | Sbjct 4818 TCGCGGGGTGTCGGCAACCGGATCGCGCAGCGACACATCGCGATCGCGCAGAAGCTG--G 4875 Query 54554 CCTCGCCAACGGGCTGCACGTGC---CGCACAAGGATCTGGCGTACCT--CGTC-GAGGG 54607 || | || ||| ||||| || || ||| || |||||||| |||| ||| Sbjct 4876 CCAGG--AAGTGGCACATCGTGCTCCCGAACCCGGACCTCGCGTACCTGCCGTCCGAG-- 4931 Query 54608 CACGGTCGAGTTCGACCGCTACCTCGTCGAACTGCGCTGGGCGCAGCGGTTCGCGTACTA 54667 ||| ||| |||| |||||| || ||| ||||| |||||||||||| | | Sbjct 4932 -ACGCCGGAGCTCGAGGTGTACCTCCGGGATCTGGCGTGGGCACAGCGGTTCGCGCTCGA 4990 Query 54668 CAACCGCGCCGAAATGATGGACCGATTCGAGCAGGCGTTCAGGCATTGGGTCGGCGCCGA 54727 |||||||| || |||||||| || ||| |||||||||| ||| ||||| || ||| Sbjct 4991 GAACCGCGCTGAGATGATGGATCGCTTCCGGCAGGCGTTCGCGCACTGGGTAGGTCACGA 5050 Query 54728 CCA-GNNNNNNNNNNNNNNNNNNNNNACC--ATCAACGCGCACCACAACTACACGCAAAA 54784 | | | | |||||| | |||||||||||||| Sbjct 5051 CGGTGACCCGGCCGAGCTCGAGACCGAGCGGATCAACACCCACCACAACTACACCGTCCG 5110 Query 54785 GGAGCGGCACGGCGACCGTGATGTGTGGCTGACCCGTAAGGGGGCGATCGACGCGAACGC 54844 ||||| ||||||| | || |||||||||||||| ||||| |||||||||||| ||| Sbjct 5111 AGAGCGACACGGCGGCAAGGACGTGTGGCTGACCCGCAAGGGTGCGATCGACGCGCACGA 5170 Query 54845 CGGTGTGCGGGGCCTGATTCCGGGCTCGATGGGCACCTGTTCGTATGTCGTGACCGGCAA 54904 |||||||||||| | || |||||||||||||| || | || || ||||||||||||| Sbjct 5171 GGGTGTGCGGGGCATCATCCCGGGCTCGATGGGGACGCGGTCCTACATCGTGACCGGCAA 5230 Query 54905 GGGTAATCCCGAGGCG--TTGTGCTCGGCGCCGCACGGTGCGGGCCGCCGGTTCTCGCGC 54962 ||| | | | |||| |||| |||||||||||||| ||||| || |||||||| || Sbjct 5231 GGG--ACACGGCGGCGGTCTGTGTTCGGCGCCGCACGGCGCGGGGCGTCGGTTCTCACGG 5288 Query 54963 ACGAAGGCGCGCAAG---CTGTTCACGGTCGACGACCTCGAGG-CGCGTATGGCGGGCAT 55018 | |||| |||| | || ||| | | ||| ||||||| |||| ||| | || || Sbjct 5289 GCCGAGGC---CAAGCGTCGGTACACCGAGGCCGATCTCGAGGCCGCG-ATGACCGGGAT 5344 Query 55019 CGAGTACCGCAAGGGCGAGGCGTGGGTCGACGAGATTCCCGACGCATACAAGCCGATCGA 55078 ||||||||| | || | || |||| |||||||||| || | || |||||| ||||| Sbjct 5345 CGAGTACCGGCACGGGGCGGAGTGGATCGACGAGATCCCGCAGGCGTACAAGAGCATCGA 5404 Query 55079 CGTCGTGATGCACGACGCCGAAACGCTGGTGTCGGTGGATGCCGAGCTGCGGCAGCTCTT 55138 |||||||||| ||||||||| || |||||| | || | ||||| ||| | | Sbjct 5405 CGTCGTGATGGCCGACGCCGAGCGCCTCGTGTCGATCGACCACACCCTGCGTCAGGTGCT 5464 Query 55139 GAACGTCAAGGG 55150 ||||| ||||| Sbjct 5465 CAACGTGAAGGG 5476 >seq134864 Length=649 Score = 239 bits (264), Expect = 2e-58 Identities = 435/632 (69%), Gaps = 27/632 (4%) Strand=Plus/Minus Query 54474 TGGTTGTTCCTGCACTCCGGTTCTCGTGGTGTCGGTAACAAGATCGCGCAGAAGCACATT 54533 |||||||||||||||||||| || || |||||||| ||| |||||| ||| | ||||| Sbjct 615 TGGTTGTTCCTGCACTCCGGGTCCCGCGGTGTCGGCAACCGGATCGCCCAGCACCACATC 556 Query 54534 CAGGCCGCGCAG--GGCTATTGCCTCGCCAACGGGCTGCACGTGCCGCACAAGGATCTGG 54591 || || | | | | || | | | ||||||| | | || | | ||||| | Sbjct 555 GGGGTTGCCCGGAAGTCGATGG--TGGACAACGGGATCGAGCTGGCAGATCGCGATCTCG 498 Query 54592 CGTACCTCGTCGAGGGCACGGTCGAGTTCGACCGCTACCTCGTCGAACTGCGCTGGGCGC 54651 ||||||| || |||||||| | ||||||||| |||||| | ||| || |||||| | Sbjct 497 CGTACCTGGTGGAGGGCACCGAGGAGTTCGACGCCTACCTGGCCGAGCTCACCTGGGCAC 438 Query 54652 AGCGGTTCGC-GTACTACAACCGCGCCGAAATGATGGACCGATTCGAGCAGGCGTTCAGG 54710 ||| |||||| | ||| |||||||| ||| |||||||| || ||| || | | | | Sbjct 437 AGCAGTTCGCCGCACT-CAACCGCGACGAGATGATGGAGCGTGTCGTGCGGTCACTGCAG 379 Query 54711 CATTGGGTCGGCGCCGACCAGNNNNNNNNNNNNNNNNNNNNNACCATCAACGCGCACCAC 54770 ||| ||||||| || | ||| || | |||||| Sbjct 378 TTCTGGATCGGCGCGGAGGTGGAGGTGTCCGAGG--------ACC-TCGGCTGCCACCAC 328 Query 54771 AACTACACGCAAAAGGAGCGGCACGGCGACCGTGA--TG-TGTGGCTGACCCGTAAGGGG 54827 ||||||||| ||| |||| || |||| || ||||| || |||| ||||| Sbjct 327 AACTACACGGCCCGCGAGACGCACCACG---GTGAGCTGCTGTGGGTGTCCCGCAAGGGT 271 Query 54828 GCGATCGACGCGAACGCCGGTGTGCGGGGCCTGATTCCGGGCTCGATGGGCACCTGTTCG 54887 || ||| |||| | | ||| || | || ||||| ||||| |||||||| || ||| Sbjct 270 GCCATCAACGCCGAGGTCGGCGTCCCCGGGCTGATCCCGGGGTCGATGGGTACGGCGTCG 211 Query 54888 TATGTCGTGACCGGCAAGGGTAATCCCGAGGCGT---TGTGCTCGGCGCCGCACGGTGCG 54944 || |||||| |||||| ||| || |||| || ||||| || |||||||| || Sbjct 210 TACGTCGTGTCCGGCAGGGGGAA---CGAGCAGTCCCTGTGCAGTGCACCGCACGGAGCA 154 Query 54945 GGCCGCCGGTTCTCGCGCACGAAGGCGCGCAAGCTGTTCACGGTCGACGACCTCGAGGCG 55004 ||||| | |||||| ||||||||||||||| ||||||||||||||||| |||| Sbjct 153 GGCCGGGCCTACTCGCGGACGAAGGCGCGCAAGACCTTCACGGTCGACGACCTGCGGGCG 94 Query 55005 CGTATGGCGGGCATCGAGTACCGCAAGGGCGAGGCGTGGGTCGACGAGATTCCCGACGCA 55064 |||| || |||||||||||| | ||||||| ||||||||||| |||| ||| Sbjct 93 GCGATGGTCGGGATCGAGTACCGCGACACGGAGGCGTTCGTCGACGAGATCCCCGGCGCC 34 Query 55065 TACAAGCCGATCGACGTCGTGATGCACGACGC 55096 |||||| |||||| |||||| ||| || Sbjct 33 TACAAGGACATCGACCAGGTGATGGCCGATGC 2 >seq189415 Length=2896 Score = 98.7 bits (108), Expect = 4e-16 Identities = 101/132 (77%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 37615 TGGCGGGACAAGGCCGTGTGTGCGCAGACCGACCCCGAAATCTTCTTTCCAGAGCAGGGC 37674 |||| |||| ||| |||| ||||||||||||||||| ||||| || ||| ||||| Sbjct 569 TGGCAGGACCGGGCGCTGTGCGCGCAGACCGACCCCGAGGCGTTCTTCCCCGAGAAGGGC 510 Query 37675 GGCAGCACCCGCGAGGCCAAGCGCATTTGCGGCGGCTGCCAGGTGTCCGACGAGTGCCTT 37734 ||| |||||||||||||||||||| ||| |||||| ||||| | |||||||| Sbjct 509 GGCTCGACCCGCGAGGCCAAGCGCATCTGCCAGGGCTGCGAGGTGAAGGCGGAGTGCCTC 450 Query 37735 ACGTGGGCGCTG 37746 || |||||| Sbjct 449 GAGTACGCGCTG 438 >seq20617 Length=36039 Score = 86.0 bits (94), Expect = 2e-12 Identities = 104/142 (73%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 38616 ATCGAGTGCATCGACATTACGCAGCACATGGGGTTTTGCCTCGGCAACGCCACCAAGTAC 38675 |||||||||||||| || || |||||||| || ||| | |||||||| | |||||| Sbjct 28194 ATCGAGTGCATCGAGATCACCAAGCACATGAACTTCTGCTTGGGCAACGCGATGAAGTAC 28135 Query 38676 GTGTGGCGCTGCGACCTCAAGCACGACGCAATCGAGGACTTACGCAAGGCAATTCAGTGC 38735 | |||||| | |||||| |||| | ||||| | |||||||| | |||| | Sbjct 28134 ATCTGGCGCGCTGGGCTCAAGGGCGACAGTGTGGAGGATCTGCGCAAGGCCAAGCAGTAC 28075 Query 38736 ATCGAGTTTGAAATCGCCCGGC 38757 ||||| || || |||| ||||| Sbjct 28074 ATCGACTTCGAGATCGACCGGC 28053 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 190602777756960