Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20pachinus_20[genbank_20GCA_5F900068735.1_202017-04-26] 277,083 sequences; 279,264,790 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq13366 544 9e-150 seq7533 136 4e-27 seq56708 104 3e-17 >seq13366 Length=6323 Score = 544 bits (602), Expect = 9e-150 Identities = 1195/1789 (67%), Gaps = 27/1789 (2%) Strand=Plus/Plus Query 46964 TAATTTGTCTTTTTCCACAGTAAACTTAATTGGATTACTCGCTGATTTTGTTCGTAAATA 47023 || ||| |||| || |||||||||| ||| | ||| |||| |||||| ||||| || Sbjct 495 TATTTTACCTTTGTCTACAGTAAACTGAATAGCATTTGCTGCTGGTTTTGTGCGTAAGTA 554 Query 47024 ATACATACCAGTCTTTAAACCTAAACTCCATCCATAGAAATGCATACTAGTTAATTTAGA 47083 ||||| || || ||||| || | |||| | | |||||| || || | ||| Sbjct 555 GTACATTCCTGTTTTTAATCCCATTTTCCAAGCGTGGAAATGAATCGACGTAAGTTTTCC 614 Query 47084 ATAACTAGGTTCTGAAATATGAATATTAAGAGATTGACTCTGATCAATAAATGCACCTCT 47143 ||| |||||| | || ||| || |||| ||||||||| || || ||||| || ||||| Sbjct 615 ATAGTTAGGTTTAGCAACATGTATGTTAAAAGATTGACTTTGGTCTATAAAAGCTCCTCT 674 Query 47144 ATCAGCTGCCATATCTAAAATAACCCTTT--GTGGTATCTCCCATACTGTTTTATAAATT 47201 |||||||||||| | || | ||| ||| ||||||||||| ||||| || | Sbjct 675 ATCAGCTGCCATCTGTATGG--ATGTTTTCAGTGAAATCTCCCATACGGTTTTGTACAAA 732 Query 47202 TGTTTAATGTCTTCTGGGAGATT---AGTATTTTGAATAGATCCTCCgttttctataatt 47258 | | | || |||| || | || | | | ||| |||||||| ||| | |||||| Sbjct 733 TCTCTTATTTCTTTAGGAATTTTTTCAATTTCTTGTATAGATCCATTGTTGTATATAATA 792 Query 47259 ttgttttttaa---ttcatttgaccaaagttttcgttcagttaatgtttttaaAAGATGA 47315 ||||| | ||||| || || || ||| || | | ||||||| Sbjct 793 AGATTTTTCATATCTTCATCCCACAAATCAGCCCG---AGTCAAATCAGTCAGAAGATGA 849 Query 47316 GGATTAACAATTTGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATAT 47375 | || || | ||||||||||||||| ||||| | || ||||| |||| | Sbjct 850 TGGTTCACTACAGGAAATTCTCCAGATAAGACTCTTCTTTGGTAAATATTTGATGTAAAG 909 Query 47376 GGTTCTATAGATTCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCA 47435 ||||| | ||||||| | || |||| |||||| ||||| || || || ||||| | || Sbjct 910 GGTTCAAAAGATTCAGTGTTGCCAAGAATTTGTGCAGTAGAGGCAGTCGGCATAGGAGCT 969 Query 47436 ACTAATAAGCTATTTCTTACTCCATATTTTTGTATCTNNNNNNNNNNNNGTTTCCAATCC 47495 | |||| ||| | | |||| |||| ||||| ||| ||| Sbjct 970 ATCAATAGAGAATTGCGCAAACCATGTTTTGCTATCTTTTCTTTAAGGACAGCCCAGTCC 1029 Query 47496 CAAAGATCTGATGGAACAACATTCCAAAAATCATATTGAAGAATTCCTTTACTTATCGGA 47555 ||||| |||| ||| | ||| | |||||| || || || |||| ||| ||| Sbjct 1030 CAAAGGTCTGTAGGAGTTTTGTCCCACATATCATACTGGAGGATACCTTGGCTTGCTGGA 1089 Query 47556 GAACCATTATATGTTTTATAAGGACCGTATAGTTTAGCGAGTTCACAACTTGCTTCCAAT 47615 || | |||||| | || | ||| | | || ||| | ||||||||| ||||| ||| Sbjct 1090 CTCCCTTGATATGTGCTGTATGCACCTTCTTTTTCAGCTAATTCACAACTAGCTTCTAAT 1149 Query 47616 GCACTATAATATATTGTTTCAAATATTTTTATGTTTAGATTCCTTGCTT-CTGATGATTC 47674 |||| |||||| |||||||||||||||| | || ||| |||||| || | ||| Sbjct 1150 GCACCATAATAAATTGTTTCAAATATTTGTTGATTGAGAAGTATTGCTTTCTCACT-TTC 1208 Query 47675 AAAAGGATANNNNNNNNNNNNNAAT-GTATCTGCCAATCCTTGAACACCAATACCAATTG 47733 ||| ||| || | |||||||| || ||||||||||||||||| | Sbjct 1209 GTAAG-ATATTCTCATCAACACAAACGCATCTGCCATGCCCTGAACACCAATACCAATAG 1267 Query 47734 GTCTATGAGTTTTATTAGAAAACTCAGCTTCTGGTAATGGATATTTGTTTATATCTATAA 47793 ||||||| | |||| ||| | || || || | ||||| || | ||| |||| Sbjct 1268 GTCTATGTCTCATATTTGAAGTTTTTGCCTCAGGGACAGGATAAAAATTAACATCAATAA 1327 Query 47794 TTTTATTTAGANNNNNNNNNNNNNNNNNNACAATTTCTCTTAATTTATTAAAATCAAACT 47853 ||| |||| | |||||| ||||||| ||||||| ||| Sbjct 1328 CTTTGTTTAAATTTTGAGTTACAATCTTTGTGATTTCTTTTAATTTTTTAAAATTAAATC 1387 Query 47854 TGTTATTTATAACAAACCTATTAAGTGCTATAGATGCTAGATTACATACAGCTACCTCAT 47913 |||||||| ||||||| | ||||||||||| || || || || || || || || |||| Sbjct 1388 TGTTATTTTCAACAAACATGTTAAGTGCTATGGAAGCAAGGTTGCACACTGCCACTTCAT 1447 Query 47914 TTGGATTAGTATATTGTATTATTTCAGCACATAGATTACCACATTTGATAGTACCCAAAT 47973 | ||| ||||| | | |||| || ||||| | |||||| ||||| || | || Sbjct 1448 CTTCTGAAGTGTATTGCACAACCTCAGTGCAAAGATTGCTACATTTAATAGTGCCAAGAT 1507 Query 47974 TTTGATGATTATTNNNNTTGTTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTT 48033 ||| |||||| | ||||||| || ||||| || | ||| | ||||| ||||| | Sbjct 1508 TTTTTTGATTACTCTTTCTGTTACAAGCATCCTTATACAACATGTATGGTGTACCAGTCT 1567 Query 48034 CTATCTGAGATTCAATGATAGATTTCCAAACAGTCCT-AGCCTTTATAACAGCTCTAGCT 48092 | | || | ||| || || || ||||| | | || | ||| | | | || | Sbjct 1568 CCACTTGGGCTTCTATAATTGACTTCCATA-ACTCTTGAGCTCTGACTTGTTTTATAAAT 1626 Query 48093 TTATTATCATGTTCGTATTTAGTATATAACTTCTCAAATTCATCCCCATACACATTATCT 48152 || || | ||| ||||| | ||||| | |||||||| || ||| | | | | Sbjct 1627 CGTTTTTCTTCTTCATATTTGGCATATAGTTCTTCAAATTCCTCTCCAAAGCAGTCAGCG 1686 Query 48153 AACCCAGGACATTCATTAGGACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTC 48212 | |||||||| |||| ||||||||| | |||| | ||||| |||| |||||| || Sbjct 1687 AGGCCAGGACAATCATGAGGACACATGAGACTCCAAACTTCATCCTTTTCTACTCTTTTC 1746 Query 48213 ATAAATATATCTGGTATCCAAAGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTG 48272 ||||| | |||||||||||| | ||| ||| | || |||| ||| | |||||| || Sbjct 1747 ATAAACAGATCTGGTATCCATAAAGCATAAAACAGTTCTCTAGCTCTCATTTCTTCCTTA 1806 Query 48273 CCACTATTCCT-TTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATA 48331 || | ||| | ||||| | |||| || || | |||||| |||||||| || |||||||| Sbjct 1807 CCTGTGTTCTTCTTTAAATCCAAG-AATTCAAATATATCCGCATGCCAAGGCTCTAAATA 1865 Query 48332 TATTGCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTT 48391 ||||| | | | || || ||||| || || |||||||||| |||||||||||||||||| Sbjct 1866 AATTGCAAATGCGCCGGGACGTTTGTTTCCACCTTGATCTACATATCTGGCAGTATTGTT 1925 Query 48392 ATAAACTCTTAACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATAACT 48451 ||| ||||| |||||||| || | ||||||||| | ||||| || || | || ||| Sbjct 1926 ATACACTCTCAACATTGGCACTAGACCATTTGAGACCCCATTAGTGCCAGCTATGTAAGA 1985 Query 48452 TCCACTAGCTCTTAT---ATTACTAATTGAAATACCTATACCACCTGCCATTTTAGATAT 48508 || |||||| || || || || || |||||| ||||| || |||||| || Sbjct 1986 ACCCTGAGCTCTGATGCAATGTGTA--TGTAA-ACCTATGCCACCAGCAGATTTAGAAAT 2042 Query 48509 TAGAGCACACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCATATTTAA 48568 || ||||| |||| | |||||| |||| ||||| || ||||| ||| ||||| || Sbjct 2043 TAATGCACATTGTTTTAAAGTATCAAAAATACCTTCAATGCTATCGTCTTTCATAGCTAT 2102 Query 48569 TAGAAAACAACTAGACATTTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGC 48628 || ||||| || | || || | || ||| || | ||| || ||| Sbjct 2103 AAGGAAACAGGAGGAAAGCTGTGGCCGCGGTGTGGCTGCGGAGAACAGTGTAGGGCTTGC 2162 Query 48629 ATGAATAAACCATTTCTCTGATAACAATTTATATGTTTCAATAACAGAATCTATATCCCA 48688 ||| |||| |||||||||| | || ||||| || | || || ||| || || Sbjct 2163 ATGTGTAAAATATTTCTCTGACATCATATTATAAGTATTGATTGCACTATCAATGTCTTC 2222 Query 48689 TTGATGTATACCTATAGATACACGCATTAACATATATTGAGGTCTTTCA 48737 ||| || ||||| || || | ||| | ||| | |||||| |||||| Sbjct 2223 ACCATGAATGCCTATGGAGACTCTCATAAGCATGTGTTGAGGCCTTTCA 2271 Score = 86.0 bits (94), Expect = 7e-12 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 48744 TTGTTATTTATTTTCAAAAGATATGATTTTTCCAATGTTTTAAAACCAAAATAGTTGTAT 48803 || || ||||| ||||| | ||||||| ||||||| ||||| |||||||||||||||||| Sbjct 2610 TTATTGTTTATCTTCAACAAATATGATCTTTCCAAAGTTTTGAAACCAAAATAGTTGTAT 2669 Query 48804 GAAAAGTCGTTATCATTAATAATTGATGAATTTATTCTTTCCTTATGTTT 48853 ||| || |||||| || ||| | || | || | | ||||| | ||| Sbjct 2670 TTAAAATCTCTATCATAAACAATGGCAGAGTCTAATTTGTCCTTGTTTTT 2719 >seq7533 Length=2710 Score = 136 bits (150), Expect = 4e-27 Identities = 157/210 (75%), Gaps = 6/210 (3%) Strand=Plus/Minus Query 19233 ATATGCATCTATCAATAAACTGTACATTTCTGAATGAATATTTTCTATAGCCATCTGAAA 19292 ||||| || || |||||| |||||| |||||||||| |||||| ||||| || ||||| Sbjct 1023 ATATGTGTCAATTAATAAAGAGTACATCTCTGAATGAACATTTTCCATAGCAATTTGAAA 964 Query 19293 TCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTCACTACAAAATCTTTCGACCAAATT 19352 || || || || || ||||| || | || || || |||| | || ||||| || Sbjct 963 ACCATAGAAGCACCTGGCTTCAGTCACTTGAACCTCTTGTGAAAAACGCTCCACCAAGTT 904 Query 19353 TTCATTAACTATTCCATCACTAGCTGCAAAAAATGCTAATACATGTTTAATAAAATGTTT 19412 |||||||| || |||||| ||| ||||| |||||||| ||||| || ||||||||||| Sbjct 903 CTCATTAACAATACCATCAGAAGCCGCAAAGAATGCTAAGACATGCTTGATAAAATGTTT 844 Query 19413 TTC---ATCTGAGGTTAATGTATTCCAATC 19439 || |||| ||||||| | |||||| Sbjct 843 CTCACAATCT---TTTAATGTCTCCCAATC 817 Score = 116 bits (128), Expect = 4e-21 Identities = 159/222 (72%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 |||| || ||| || | ||||||| || || || || |||||||| |||| ||||| Sbjct 1859 CCTCATCCCTAGAAATAAGTTCATTACTGAAAGTCAATCCGGGCATCAGACCTCGTTTTT 1800 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 | ||||| ||||| |||||||| || || || ||||| || || ||||||||||||| Sbjct 1799 TCAACCAAAATATTGAAGCAAAGCTGCCTGAGAAAAATATTCCCTCAACTGCTGCAAAAG 1740 Query 19103 CAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCATTTCAGTGCCCAATCAG 19162 ||| || | ||||||| | |||| || | ||||| | | ||||| || | Sbjct 1739 CAATTATACGTTCTCCAAATGTAGCTGTCTTGCTGCCGATCCACTGTAACGCCCAGTCTG 1680 Query 19163 CCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATA 19204 ||||||| || |||||||| | || || || | ||| |||| Sbjct 1679 CCTTCTTCTTAACACATGGTAGAGTTTCAATTGCATTGAATA 1638 Score = 105 bits (116), Expect = 7e-18 Identities = 86/103 (83%), Gaps = 1/103 (1%) Strand=Plus/Minus Query 19442 TAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTAT 19501 ||||| ||| |||||| ||||||||||| | |||||||| || || || |||||||||| Sbjct 687 TAATACCTT-AGATAAGTCTACTTCTTCTGCAGTCCAAAACGATGCTTCAGCTTTTTTAT 629 Query 19502 ACATGTTCCATATATCACGATATTGTATAGGAAATATAACAAA 19544 |||| | ||||||||| ||||||| || || ||||||||||| Sbjct 628 ACATCTGCCATATATCTGGATATTGGATTGGGAATATAACAAA 586 >seq56708 Length=5257 Score = 104 bits (114), Expect = 3e-17 Identities = 243/364 (67%), Gaps = 7/364 (2%) Strand=Plus/Plus Query 136634 ATGACTCC--TATTAACCCAATGTTGGCAGAATCATGTGAATCTGTAGATAAAGCATTTA 136691 |||||||| ||||| || ||||| |||||| | || | || || || | || | | Sbjct 2032 ATGACTCCAGTATTA--CCGATGTTAGCAGAAGCTTGCAAGTCAGTTGAAATGGCTATGA 2089 Query 136692 AAAAGTTTCCAAATGGAATATTTGCAGAAATAAAATATGACGGAGAACGTGTACAGGTTC 136751 |||| | ||||||||| || ||| | || ||||||||||| |||||||| || || || | Sbjct 2090 AAAAATGTCCAAATGGCATGTTTTCTGAGATAAAATATGATGGAGAACGGGTTCAAGTCC 2149 Query 136752 ACAAGAATGGAAACCACTTTGCATTTTTTAGTAGAAACATGAAACCCGTAACAAAACATA 136811 | || || ||||| | || || |||| | | | ||||| |||| || | Sbjct 2150 ATAAAAAGGGAAATGAGTTCAAATATTTTTCCCGTGCCTTAAAACCAGTAATGGCTCACA 2209 Query 136812 AAGTTGATTATCTTAATGAGTATATACCTAAAGCCTTTAAAAATGTATCATCTCTTATTT 136871 ||||| | || |||| || ||| |||| ||||| ||| || | | | | || | Sbjct 2210 AAGTTAGTCATTTTAAAGATTATTTACCCAAAGCATTTCCTAAAGGAGATGATTTGATCT 2269 Query 136872 TAGATTCAGAAATAGTACTAGTAGATAAAAATAAT---AAACCATTACCATTTGGCAGTT 136928 | ||| | ||| || | | || ||| |||| | |||||||| || || || | | Sbjct 2270 TGGATGCTGAAGTACTTATGGTTGATGTCAATACTGGAAAACCATTGCCTTTCGGTACAT 2329 Query 136929 TGGGTATACATAAAAAGAAGGAATATAATGATTCATCACTATGTTTATTTGTATTTGATT 136988 | ||||| || ||| | |||| ||| ||| | | | || |||| | ||||||||| Sbjct 2330 TAGGTATTCACAAACAATCAGAATTTAAAGATGCTCAAGTTTGCTTATATATATTTGATT 2389 Query 136989 GTTT 136992 | || Sbjct 2390 GCTT 2393 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 560161915092120