Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heliconius_20pachinus_20[genbank_20GCA_5F900068735.1_202017-04-26]
277,083 sequences; 279,264,790 total letters
Query= NC_015960.1
Length=175699
Score E
Sequences producing significant alignments: (Bits) Value
seq13366 544 9e-150
seq7533 136 4e-27
seq56708 104 3e-17
>seq13366
Length=6323
Score = 544 bits (602), Expect = 9e-150
Identities = 1195/1789 (67%), Gaps = 27/1789 (2%)
Strand=Plus/Plus
Query 46964 TAATTTGTCTTTTTCCACAGTAAACTTAATTGGATTACTCGCTGATTTTGTTCGTAAATA 47023
|| ||| |||| || |||||||||| ||| | ||| |||| |||||| ||||| ||
Sbjct 495 TATTTTACCTTTGTCTACAGTAAACTGAATAGCATTTGCTGCTGGTTTTGTGCGTAAGTA 554
Query 47024 ATACATACCAGTCTTTAAACCTAAACTCCATCCATAGAAATGCATACTAGTTAATTTAGA 47083
||||| || || ||||| || | |||| | | |||||| || || | |||
Sbjct 555 GTACATTCCTGTTTTTAATCCCATTTTCCAAGCGTGGAAATGAATCGACGTAAGTTTTCC 614
Query 47084 ATAACTAGGTTCTGAAATATGAATATTAAGAGATTGACTCTGATCAATAAATGCACCTCT 47143
||| |||||| | || ||| || |||| ||||||||| || || ||||| || |||||
Sbjct 615 ATAGTTAGGTTTAGCAACATGTATGTTAAAAGATTGACTTTGGTCTATAAAAGCTCCTCT 674
Query 47144 ATCAGCTGCCATATCTAAAATAACCCTTT--GTGGTATCTCCCATACTGTTTTATAAATT 47201
|||||||||||| | || | ||| ||| ||||||||||| ||||| || |
Sbjct 675 ATCAGCTGCCATCTGTATGG--ATGTTTTCAGTGAAATCTCCCATACGGTTTTGTACAAA 732
Query 47202 TGTTTAATGTCTTCTGGGAGATT---AGTATTTTGAATAGATCCTCCgttttctataatt 47258
| | | || |||| || | || | | | ||| |||||||| ||| | ||||||
Sbjct 733 TCTCTTATTTCTTTAGGAATTTTTTCAATTTCTTGTATAGATCCATTGTTGTATATAATA 792
Query 47259 ttgttttttaa---ttcatttgaccaaagttttcgttcagttaatgtttttaaAAGATGA 47315
||||| | ||||| || || || ||| || | | |||||||
Sbjct 793 AGATTTTTCATATCTTCATCCCACAAATCAGCCCG---AGTCAAATCAGTCAGAAGATGA 849
Query 47316 GGATTAACAATTTGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATAT 47375
| || || | ||||||||||||||| ||||| | || ||||| |||| |
Sbjct 850 TGGTTCACTACAGGAAATTCTCCAGATAAGACTCTTCTTTGGTAAATATTTGATGTAAAG 909
Query 47376 GGTTCTATAGATTCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCA 47435
||||| | ||||||| | || |||| |||||| ||||| || || || ||||| | ||
Sbjct 910 GGTTCAAAAGATTCAGTGTTGCCAAGAATTTGTGCAGTAGAGGCAGTCGGCATAGGAGCT 969
Query 47436 ACTAATAAGCTATTTCTTACTCCATATTTTTGTATCTNNNNNNNNNNNNGTTTCCAATCC 47495
| |||| ||| | | |||| |||| ||||| ||| |||
Sbjct 970 ATCAATAGAGAATTGCGCAAACCATGTTTTGCTATCTTTTCTTTAAGGACAGCCCAGTCC 1029
Query 47496 CAAAGATCTGATGGAACAACATTCCAAAAATCATATTGAAGAATTCCTTTACTTATCGGA 47555
||||| |||| ||| | ||| | |||||| || || || |||| ||| |||
Sbjct 1030 CAAAGGTCTGTAGGAGTTTTGTCCCACATATCATACTGGAGGATACCTTGGCTTGCTGGA 1089
Query 47556 GAACCATTATATGTTTTATAAGGACCGTATAGTTTAGCGAGTTCACAACTTGCTTCCAAT 47615
|| | |||||| | || | ||| | | || ||| | ||||||||| ||||| |||
Sbjct 1090 CTCCCTTGATATGTGCTGTATGCACCTTCTTTTTCAGCTAATTCACAACTAGCTTCTAAT 1149
Query 47616 GCACTATAATATATTGTTTCAAATATTTTTATGTTTAGATTCCTTGCTT-CTGATGATTC 47674
|||| |||||| |||||||||||||||| | || ||| |||||| || | |||
Sbjct 1150 GCACCATAATAAATTGTTTCAAATATTTGTTGATTGAGAAGTATTGCTTTCTCACT-TTC 1208
Query 47675 AAAAGGATANNNNNNNNNNNNNAAT-GTATCTGCCAATCCTTGAACACCAATACCAATTG 47733
||| ||| || | |||||||| || ||||||||||||||||| |
Sbjct 1209 GTAAG-ATATTCTCATCAACACAAACGCATCTGCCATGCCCTGAACACCAATACCAATAG 1267
Query 47734 GTCTATGAGTTTTATTAGAAAACTCAGCTTCTGGTAATGGATATTTGTTTATATCTATAA 47793
||||||| | |||| ||| | || || || | ||||| || | ||| ||||
Sbjct 1268 GTCTATGTCTCATATTTGAAGTTTTTGCCTCAGGGACAGGATAAAAATTAACATCAATAA 1327
Query 47794 TTTTATTTAGANNNNNNNNNNNNNNNNNNACAATTTCTCTTAATTTATTAAAATCAAACT 47853
||| |||| | |||||| ||||||| ||||||| |||
Sbjct 1328 CTTTGTTTAAATTTTGAGTTACAATCTTTGTGATTTCTTTTAATTTTTTAAAATTAAATC 1387
Query 47854 TGTTATTTATAACAAACCTATTAAGTGCTATAGATGCTAGATTACATACAGCTACCTCAT 47913
|||||||| ||||||| | ||||||||||| || || || || || || || || ||||
Sbjct 1388 TGTTATTTTCAACAAACATGTTAAGTGCTATGGAAGCAAGGTTGCACACTGCCACTTCAT 1447
Query 47914 TTGGATTAGTATATTGTATTATTTCAGCACATAGATTACCACATTTGATAGTACCCAAAT 47973
| ||| ||||| | | |||| || ||||| | |||||| ||||| || | ||
Sbjct 1448 CTTCTGAAGTGTATTGCACAACCTCAGTGCAAAGATTGCTACATTTAATAGTGCCAAGAT 1507
Query 47974 TTTGATGATTATTNNNNTTGTTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTT 48033
||| |||||| | ||||||| || ||||| || | ||| | ||||| ||||| |
Sbjct 1508 TTTTTTGATTACTCTTTCTGTTACAAGCATCCTTATACAACATGTATGGTGTACCAGTCT 1567
Query 48034 CTATCTGAGATTCAATGATAGATTTCCAAACAGTCCT-AGCCTTTATAACAGCTCTAGCT 48092
| | || | ||| || || || ||||| | | || | ||| | | | || |
Sbjct 1568 CCACTTGGGCTTCTATAATTGACTTCCATA-ACTCTTGAGCTCTGACTTGTTTTATAAAT 1626
Query 48093 TTATTATCATGTTCGTATTTAGTATATAACTTCTCAAATTCATCCCCATACACATTATCT 48152
|| || | ||| ||||| | ||||| | |||||||| || ||| | | | |
Sbjct 1627 CGTTTTTCTTCTTCATATTTGGCATATAGTTCTTCAAATTCCTCTCCAAAGCAGTCAGCG 1686
Query 48153 AACCCAGGACATTCATTAGGACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTC 48212
| |||||||| |||| ||||||||| | |||| | ||||| |||| |||||| ||
Sbjct 1687 AGGCCAGGACAATCATGAGGACACATGAGACTCCAAACTTCATCCTTTTCTACTCTTTTC 1746
Query 48213 ATAAATATATCTGGTATCCAAAGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTG 48272
||||| | |||||||||||| | ||| ||| | || |||| ||| | |||||| ||
Sbjct 1747 ATAAACAGATCTGGTATCCATAAAGCATAAAACAGTTCTCTAGCTCTCATTTCTTCCTTA 1806
Query 48273 CCACTATTCCT-TTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATA 48331
|| | ||| | ||||| | |||| || || | |||||| |||||||| || ||||||||
Sbjct 1807 CCTGTGTTCTTCTTTAAATCCAAG-AATTCAAATATATCCGCATGCCAAGGCTCTAAATA 1865
Query 48332 TATTGCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTT 48391
||||| | | | || || ||||| || || |||||||||| ||||||||||||||||||
Sbjct 1866 AATTGCAAATGCGCCGGGACGTTTGTTTCCACCTTGATCTACATATCTGGCAGTATTGTT 1925
Query 48392 ATAAACTCTTAACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATAACT 48451
||| ||||| |||||||| || | ||||||||| | ||||| || || | || |||
Sbjct 1926 ATACACTCTCAACATTGGCACTAGACCATTTGAGACCCCATTAGTGCCAGCTATGTAAGA 1985
Query 48452 TCCACTAGCTCTTAT---ATTACTAATTGAAATACCTATACCACCTGCCATTTTAGATAT 48508
|| |||||| || || || || || |||||| ||||| || |||||| ||
Sbjct 1986 ACCCTGAGCTCTGATGCAATGTGTA--TGTAA-ACCTATGCCACCAGCAGATTTAGAAAT 2042
Query 48509 TAGAGCACACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCATATTTAA 48568
|| ||||| |||| | |||||| |||| ||||| || ||||| ||| ||||| ||
Sbjct 2043 TAATGCACATTGTTTTAAAGTATCAAAAATACCTTCAATGCTATCGTCTTTCATAGCTAT 2102
Query 48569 TAGAAAACAACTAGACATTTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGC 48628
|| ||||| || | || || | || ||| || | ||| || |||
Sbjct 2103 AAGGAAACAGGAGGAAAGCTGTGGCCGCGGTGTGGCTGCGGAGAACAGTGTAGGGCTTGC 2162
Query 48629 ATGAATAAACCATTTCTCTGATAACAATTTATATGTTTCAATAACAGAATCTATATCCCA 48688
||| |||| |||||||||| | || ||||| || | || || ||| || ||
Sbjct 2163 ATGTGTAAAATATTTCTCTGACATCATATTATAAGTATTGATTGCACTATCAATGTCTTC 2222
Query 48689 TTGATGTATACCTATAGATACACGCATTAACATATATTGAGGTCTTTCA 48737
||| || ||||| || || | ||| | ||| | |||||| ||||||
Sbjct 2223 ACCATGAATGCCTATGGAGACTCTCATAAGCATGTGTTGAGGCCTTTCA 2271
Score = 86.0 bits (94), Expect = 7e-12
Identities = 85/110 (77%), Gaps = 0/110 (0%)
Strand=Plus/Plus
Query 48744 TTGTTATTTATTTTCAAAAGATATGATTTTTCCAATGTTTTAAAACCAAAATAGTTGTAT 48803
|| || ||||| ||||| | ||||||| ||||||| ||||| ||||||||||||||||||
Sbjct 2610 TTATTGTTTATCTTCAACAAATATGATCTTTCCAAAGTTTTGAAACCAAAATAGTTGTAT 2669
Query 48804 GAAAAGTCGTTATCATTAATAATTGATGAATTTATTCTTTCCTTATGTTT 48853
||| || |||||| || ||| | || | || | | ||||| | |||
Sbjct 2670 TTAAAATCTCTATCATAAACAATGGCAGAGTCTAATTTGTCCTTGTTTTT 2719
>seq7533
Length=2710
Score = 136 bits (150), Expect = 4e-27
Identities = 157/210 (75%), Gaps = 6/210 (3%)
Strand=Plus/Minus
Query 19233 ATATGCATCTATCAATAAACTGTACATTTCTGAATGAATATTTTCTATAGCCATCTGAAA 19292
||||| || || |||||| |||||| |||||||||| |||||| ||||| || |||||
Sbjct 1023 ATATGTGTCAATTAATAAAGAGTACATCTCTGAATGAACATTTTCCATAGCAATTTGAAA 964
Query 19293 TCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTCACTACAAAATCTTTCGACCAAATT 19352
|| || || || || ||||| || | || || || |||| | || ||||| ||
Sbjct 963 ACCATAGAAGCACCTGGCTTCAGTCACTTGAACCTCTTGTGAAAAACGCTCCACCAAGTT 904
Query 19353 TTCATTAACTATTCCATCACTAGCTGCAAAAAATGCTAATACATGTTTAATAAAATGTTT 19412
|||||||| || |||||| ||| ||||| |||||||| ||||| || |||||||||||
Sbjct 903 CTCATTAACAATACCATCAGAAGCCGCAAAGAATGCTAAGACATGCTTGATAAAATGTTT 844
Query 19413 TTC---ATCTGAGGTTAATGTATTCCAATC 19439
|| |||| ||||||| | ||||||
Sbjct 843 CTCACAATCT---TTTAATGTCTCCCAATC 817
Score = 116 bits (128), Expect = 4e-21
Identities = 159/222 (72%), Gaps = 0/222 (0%)
Strand=Plus/Minus
Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042
|||| || ||| || | ||||||| || || || || |||||||| |||| |||||
Sbjct 1859 CCTCATCCCTAGAAATAAGTTCATTACTGAAAGTCAATCCGGGCATCAGACCTCGTTTTT 1800
Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102
| ||||| ||||| |||||||| || || || ||||| || || |||||||||||||
Sbjct 1799 TCAACCAAAATATTGAAGCAAAGCTGCCTGAGAAAAATATTCCCTCAACTGCTGCAAAAG 1740
Query 19103 CAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCATTTCAGTGCCCAATCAG 19162
||| || | ||||||| | |||| || | ||||| | | ||||| || |
Sbjct 1739 CAATTATACGTTCTCCAAATGTAGCTGTCTTGCTGCCGATCCACTGTAACGCCCAGTCTG 1680
Query 19163 CCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATA 19204
||||||| || |||||||| | || || || | ||| ||||
Sbjct 1679 CCTTCTTCTTAACACATGGTAGAGTTTCAATTGCATTGAATA 1638
Score = 105 bits (116), Expect = 7e-18
Identities = 86/103 (83%), Gaps = 1/103 (1%)
Strand=Plus/Minus
Query 19442 TAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTAT 19501
||||| ||| |||||| ||||||||||| | |||||||| || || || ||||||||||
Sbjct 687 TAATACCTT-AGATAAGTCTACTTCTTCTGCAGTCCAAAACGATGCTTCAGCTTTTTTAT 629
Query 19502 ACATGTTCCATATATCACGATATTGTATAGGAAATATAACAAA 19544
|||| | ||||||||| ||||||| || || |||||||||||
Sbjct 628 ACATCTGCCATATATCTGGATATTGGATTGGGAATATAACAAA 586
>seq56708
Length=5257
Score = 104 bits (114), Expect = 3e-17
Identities = 243/364 (67%), Gaps = 7/364 (2%)
Strand=Plus/Plus
Query 136634 ATGACTCC--TATTAACCCAATGTTGGCAGAATCATGTGAATCTGTAGATAAAGCATTTA 136691
|||||||| ||||| || ||||| |||||| | || | || || || | || | |
Sbjct 2032 ATGACTCCAGTATTA--CCGATGTTAGCAGAAGCTTGCAAGTCAGTTGAAATGGCTATGA 2089
Query 136692 AAAAGTTTCCAAATGGAATATTTGCAGAAATAAAATATGACGGAGAACGTGTACAGGTTC 136751
|||| | ||||||||| || ||| | || ||||||||||| |||||||| || || || |
Sbjct 2090 AAAAATGTCCAAATGGCATGTTTTCTGAGATAAAATATGATGGAGAACGGGTTCAAGTCC 2149
Query 136752 ACAAGAATGGAAACCACTTTGCATTTTTTAGTAGAAACATGAAACCCGTAACAAAACATA 136811
| || || ||||| | || || |||| | | | ||||| |||| || |
Sbjct 2150 ATAAAAAGGGAAATGAGTTCAAATATTTTTCCCGTGCCTTAAAACCAGTAATGGCTCACA 2209
Query 136812 AAGTTGATTATCTTAATGAGTATATACCTAAAGCCTTTAAAAATGTATCATCTCTTATTT 136871
||||| | || |||| || ||| |||| ||||| ||| || | | | | || |
Sbjct 2210 AAGTTAGTCATTTTAAAGATTATTTACCCAAAGCATTTCCTAAAGGAGATGATTTGATCT 2269
Query 136872 TAGATTCAGAAATAGTACTAGTAGATAAAAATAAT---AAACCATTACCATTTGGCAGTT 136928
| ||| | ||| || | | || ||| |||| | |||||||| || || || | |
Sbjct 2270 TGGATGCTGAAGTACTTATGGTTGATGTCAATACTGGAAAACCATTGCCTTTCGGTACAT 2329
Query 136929 TGGGTATACATAAAAAGAAGGAATATAATGATTCATCACTATGTTTATTTGTATTTGATT 136988
| ||||| || ||| | |||| ||| ||| | | | || |||| | |||||||||
Sbjct 2330 TAGGTATTCACAAACAATCAGAATTTAAAGATGCTCAAGTTTGCTTATATATATTTGATT 2389
Query 136989 GTTT 136992
| ||
Sbjct 2390 GCTT 2393
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 560161915092120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |