Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20pachinus_20[genbank_20GCA_5F900068735.1_202017-04-26] 277,083 sequences; 279,264,790 total letters Query= NC_016652.1 Length=49330 Score E Sequences producing significant alignments: (Bits) Value seq268996 358 2e-94 seq227914 214 6e-51 seq46609 141 3e-29 seq199668 132 2e-26 seq139445 107 6e-19 seq249899 105 2e-18 seq20828 86.0 2e-12 >seq268996 Length=1099 Score = 358 bits (396), Expect = 2e-94 Identities = 525/736 (71%), Gaps = 45/736 (6%) Strand=Plus/Plus Query 4412 CGACAAGTTCAAGAACTGGATGGAGAACTGACCATGGCTGCAATCCCACAGATCACGCAG 4471 ||| |||| ||||| |||| ||| |||| |||| | | |||| ||||| |||| Sbjct 39 CGAGAAGTACAAGAGCTGG---GAGTTCTGATCATGTCCGGAATCGCACAGGTCACCACC 95 Query 4472 GGCGGACCGAAGTCCTTCACCCCTGCCGAGGTG------ATCCTCGGCGGACAGCTCGTC 4525 || || |||||| |||||||||| ||| | | | ||| |||||| | ||||||| Sbjct 96 GGTGGCCCGAAGACCTTCACCCCCGCCAACGGGGAGACCATCTACGGCGGCCTGCTCGTC 155 Query 4526 GAGGCCCGCGCCGCCGGCCGTATCGGTATCGCCGCCGCGGACAGCGTCAAGGTGCTCGGC 4585 |||||||||||| | | || ||||| ||||||| |||| |||| ||||||||||||| Sbjct 156 GAGGCCCGCGCCAACAGTCGCATCGGCGTCGCCGCGGCGGGCAGCCTCAAGGTGCTCGGT 215 Query 4586 GTCGCCCTCACCGATGGCCAGAGTCCGGAGACCGCGCAGGGCGGCACCT---CGGTG--- 4639 ||||| || ||||| | ||| | || ||| |||| | |||| | || Sbjct 216 GTCGCACTGACCGACG-CCATCGCCC-----CCGAACAGGTGGTCACCGACCCCGTCAAC 269 Query 4640 GATGCGATCGGGCGGCCCGTCATCAACGCGATGCCGATCCCGACCGTCGTGTCCGTCGCC 4699 || ||||||||||| ||||| || ||| | | |||||||| |||| ||||||| Sbjct 270 GACGCGATCGGGCGTCCCGTGCTCGCTGCGGTCGCCATCCCGACGCGCGTGGCCGTCGCG 329 Query 4700 TACGCCGGCACCGAGACCAAGGTGGCCTATTCGGCCGCAGCAACGTTCGGCGCCAGGCTC 4759 ||||||||||||||| ||||||| |||| ||||||||||| ||||||| || |||| Sbjct 330 TACGCCGGCACCGAGGTCAAGGTGACCTACTCGGCCGCAGCCGGTTTCGGCGACAAGCTC 389 Query 4760 GTCTCGACCGGCGCCGGCAAGGTCGGCCCCGCCG------CACCCGATGCCACCGCAGCC 4813 ||| | |||| |||||||||||||||||||||| |||||||| | ||||| Sbjct 390 GTCGCCACCGCGGCCGGCAAGGTCGGCCCCGCCGGAGCGACACCCGAT--CCCCGCA--- 444 Query 4814 GAGATCGTCGGCATCTGCACGCAGCCGCAGGGCGTCGCCGCAG---GCGCGGTCGGCCTC 4870 ||||||||| |||||||| | ||| || |||||||| | || | |||| |||| Sbjct 445 -CGATCGTCGGTATCTGCACCGAACCGGCCGGTGTCGCCGCGGCGAGCACCGTCGCCCTC 503 Query 4871 ATCCGGATCGCCTGATCCCCTCACAC----CACAGGA--GAAGACCACTATGGCAACCAG 4924 || |||||| |||| | || |||| |||| | || || || |||| | || Sbjct 504 ATGCGGATCATCTGACCGCCCAACACACGAAACAGCAAGGAGCACAACCATGGTGAACAA 563 Query 4925 AACCGTTGTGAGCGGGTCGGACGGTGCGGCGATGACTGTCGCCGACTTCCTCGCGAACCC 4984 | || ||||||| ||| ||||| | | |||| || | ||| | ||| || || Sbjct 564 A---GTGGTGAGCGTGTCCGACGGCGGTCGGTTGACCGTGTCGGACCTGGTCGGGAGTCC 620 Query 4985 GCTCCTCATCCCGACCAAGCTCAAGAAGCTGCTCGAGAACCAGTTCATCGCCGAGGCTTT 5044 | || || |||||||||||| ||||| | | || ||||||||| |||| | | Sbjct 621 CATGTGGATTCCCACCAAGCTCAAGGAGCTGATGGTCAATCAGTTCATCAGCGAGACACT 680 Query 5045 GTTCCGCAATGCCGGCGCGAACACTTCCGGCGTCTTCGCCTACCACGAGGGCGACCCGTC 5104 ||||||||| |||||| ||||| | ||| || ||| ||| | ||||||||||||| Sbjct 681 GTTCCGCAACGCCGGCCCGAACCCCAACGGGATCATCGGCTATCGCGAGGGCGACCCGCT 740 Query 5105 GTTCCTCGCGGACGAC 5120 |||||||| |||||| Sbjct 741 GTTCCTCGACGACGAC 756 Score = 86.0 bits (94), Expect = 2e-12 Identities = 91/120 (76%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 5210 GGGCGTTCGCGTCACCCTCGACATGATTCGCAAGAATCAGATCGACGACGTGAACCGGCA 5269 |||||| |||||| | || ||||| | |||| | |||| || ||| | || || Sbjct 846 GGGCGTGCGCGTCTCGAAGGAGATGATCGACGAGAACAACATCGGTGAGGTGCAGCGTCA 905 Query 5270 GATCACCGCGCTGAAGAACACCTTCATCCGCACCAACGACCGCGCCGCGAAGTCCGTCCT 5329 ||| || ||| || ||||||||||||||||| |||||||||| || |||||| || |||| Sbjct 906 GATGACGGCGTTGCAGAACACCTTCATCCGCGCCAACGACCGTGCGGCGAAGGCCATCCT 965 >seq227914 Length=424 Score = 214 bits (236), Expect = 6e-51 Identities = 306/431 (71%), Gaps = 17/431 (4%) Strand=Plus/Plus Query 5482 CCGACACGATCGTCATGAACCCGGCTCTCATGCCGATCCTCATGGACAACGACGATCTGC 5541 || |||| || ||| |||||| ||| | ||| ||| |||||||||||| | | | Sbjct 8 CCAACACCATGGTCGCCCACCCGGGTCTGCTCGCGACCCTGATGGACAACGACAACATCC 67 Query 5542 TGAAGGTGTACCGCGGCAACATCGCCGACAAGAACATCGCTTACGTCGGCGCCCTCCCCG 5601 | ||| | ||| ||||||| |||||||| || ||||| ||| ||| | | |||| Sbjct 68 TCAAGATCTACAACGGCAACGTCGCCGACCAGTCGATCGCCTACA-CGGGGGTGTTCCCG 126 Query 5602 AGAC-GATCCACAACCTGAACGTCATCGTGTCGAAGGCATGGCCGGCCGACCGCGCGCTC 5660 | | | || || |||| || ||||| | || || | | | || Sbjct 127 GGCCAGCTCTACGGCCTGGACATCATCAAGNNGA-------------CGTCGGTGTGC-- 171 Query 5661 ATCCTCGAGCGCGGCGCGATCGGCTTCTACGGCGACGCCCGCCCGCTGACCTTCACCGAG 5720 ||||| ||||||||| | | || |||||| |||| |||| ||| || ||||||| Sbjct 172 ATCCTGGAGCGCGGCACCGTGGGGTTCTACACCGACACCCGGCCGTTGCAGTTCACCGGC 231 Query 5721 CTCTACCCCGAGGGCAACGGCCCGAACGGGGGCCCGCGTGAGACCTGGCGCTCGGACGCA 5780 || ||||| |||||||||||||| ||||| || ||||| ||| | |||||||||||||| Sbjct 232 CTTTACCCGGAGGGCAACGGCCCCAACGGCGGTCCGCGCGAGTCGTGGCGCTCGGACGCC 291 Query 5781 ACCCAGGAGCGTGGCATGGCTCTCGACCAGCCCAAGGCTGGGCTGTGGCTGACCGGGCTG 5840 | || |||| | ||| | ||||| ||||||||||| | | |||||||||||||| || Sbjct 292 TCGCACAAGCGGGTCATCGGGCTCGATCAGCCCAAGGCCGCGGTGTGGCTGACCGGGGTG 351 Query 5841 GTGACGCCGTGACCGAGTATGTGCTGACCGCACTGCGGTTCAACCAGATCCTCGAGCGCA 5900 ||||| |||||||||| || |||||| ||| || |||| |||| |||||||| Sbjct 352 GTGACCCCGTGACCGATTACGTGCTGCTGGCATCGCAGTTCGACCACGCGGTCGAGCGCG 411 Query 5901 ACGATCAGGGT 5911 |||| ||||| Sbjct 412 ACGAGAAGGGT 422 >seq46609 Length=4533 Score = 141 bits (156), Expect = 3e-29 Identities = 370/557 (66%), Gaps = 33/557 (6%) Strand=Plus/Minus Query 2098 TCGGTGCTTCGTGCGATCGGGCTTCCGATCCGCCGCACCACGTGGCGTCTCGACCAGAAC 2157 |||||||| || ||| || ||| ||||||||| |||| |||| ||||| | | Sbjct 1861 TCGGTGCTCCGAGCGGTCACGCTCCCGATCCGCTCCACCGAGTGGGCGATCGACGGCACC 1802 Query 2158 GGCGCCCGCGACGAGGTGACCGAGTTCGTCGCTCGCAACCTCAGGTTGGGGATCG-CGGG 2216 ||| |||||| |||||||| || ||||||| | ||||| || | || ||| |||| Sbjct 1801 GGCTGCCGCGAGGAGGTGACGCAGCTCGTCGCGGACGACCTCGGGCTCGGCATCCTCGGG 1742 Query 2217 CT-CGGACTATGTACCCACGACCCGCACCCGGGGGCGCTTCTCGTGGCG-GAGTCACCTG 2274 | | || | |||| ||| || ||||| | || ||| ||| ||| |||||| Sbjct 1741 CAGCCGAAGCGGAACCC--GACGCGGACCCGCGACCGGTTCGACTGGGACGAG-CACCTG 1685 Query 2275 CAGCCCGCGCTGCTATCGCTGCAATACGGGCACGCGTTCTTCGAGCAGATCTACCAGCTC 2334 | || || |||||| |||| | ||||||| |||||||||||||| |||| | || Sbjct 1684 CGGCTCGTGCTGCTCAAGCTGGTGTTCGGGCACTCGTTCTTCGAGCAGGTCTA-CGCCTA 1626 Query 2335 GAACCGGATGGCAAACTGGGGCTGCGC------AAACTAGCACCACGTCCGCAGCGCACG 2388 ||||| || | | ||| | | || || ||| || |||| ||||||| Sbjct 1625 CAACCGCGCGG--ACCGCCGGCACCACCTCAAGAAGCTGGCATGGCGGCCGCCGCGCACG 1568 Query 2389 ATCTCGAAGATCACCGTCGCGCTGGATGGCGGGCTGGAGTCGATCACCCAGGAGCCGCCC 2448 ||| |||||||| |||||||| ||| || ||||||||||||||||| ||| | ||| | Sbjct 1567 ATCGAGAAGATCAGCGTCGCGCGGGACGGTGGGCTGGAGTCGATCACGCAGTACCCGATC 1508 Query 2449 GTCGGCAAGCTCACGGCTGCCTCTGCGATCCCGGACGGGTTCACCATCCCGGTCAACCGG 2508 | ||| ||| ||| | |||| | | ||||||||| | | Sbjct 1507 GCCGG--------CGG-------ACCGA---CCGACGAGAAGGCGATCCCGGTCTCGCAG 1466 Query 2509 CTCGTGGCGTACGTGCACGAGCCAGAGCCCGGCCAATGGCAGGGAAACTCGATCCTCCGT 2568 ||||| ||| ||||| |||| | ||| |||| | ||| | || | ||| ||||||| Sbjct 1465 CTCGTCGCGCACGTGAACGACCGCGAGGGCGGCAACTGGTACGGCCAGTCGCTCCTCCGG 1406 Query 2569 CCGGCCTACAAGCACTGGATCATGAAGGACGAGCTCATGCGGATCCAGGCTGCGGCCGCC 2628 |||| ||| | ||||| | | |||| |||| | || | ||||| | ||| | Sbjct 1405 TCGGCGTACCCGTACTGGCTGCTCAAGGCGAAGCTGCTCCGCGTGCAGGCGCAGACCGTC 1346 Query 2629 CGCCGCAACGGCATTGG 2645 |||||||| || || Sbjct 1345 GAGCGCAACGGGATGGG 1329 >seq199668 Length=559 Score = 132 bits (146), Expect = 2e-26 Identities = 177/246 (72%), Gaps = 0/246 (0%) Strand=Plus/Minus Query 14212 GACCCGTTCGCGGACATGATCGGCCAGCGACTCTCGCCACTGCTGCAGGCGTTCAAGGGT 14271 ||||||||||||| ||||||||| ||||| | |||| |||||| | | |||||| Sbjct 248 GACCCGTTCGCGGCCATGATCGGTCAGCGGATGGCGCCGCTGCTGTCGTCATTCAAGTCC 189 Query 14272 CTGCGCGAAGAAGTCACCGACCGGTTCAGTGCCGCGATGACCGACTCGTTCACCGCGGCT 14331 || ||||| || ||||||||| ||||| |||| ||| ||| | |||||||| | | Sbjct 188 CTCCGCGAGGAGGTCACCGACAAGTTCACCACCGCCATGGCCGGCGCGTTCACCAAGACC 129 Query 14332 GGCGGGTTGGTCGACAAGCTTAAGCCGAAGCTCGGCCTGCTGGCGACCACGTTCGGCAAC 14391 ||||| | |||||| || |||||||| || ||| |||| | ||||| | Sbjct 128 GGCGGCCTCATCGACACCCTGCGACCGAAGCTGGGTGGCCTGTCGACGGTGCTCGGCGGC 69 Query 14392 ATCGGCTCTCAGATCGTGCAGTCCATCTCCAGCCCGGCCGCGCTCGAAGGCTGGAACCGG 14451 |||||| | ||||||| | ||| ||||| || |||||||| || |||||| | | Sbjct 68 ATCGGCACCCAGATCGCGACGTCGATCTCGAGTCCGGCCGCCACCGCCGGCTGGGAGTCG 9 Query 14452 ATGATC 14457 |||||| Sbjct 8 ATGATC 3 >seq139445 Length=1680 Score = 107 bits (118), Expect = 6e-19 Identities = 116/150 (77%), Gaps = 4/150 (3%) Strand=Plus/Plus Query 4459 ACAGATCACGCAGGGCGGACCGAAGTCCTTCACCCCTGCCGAGGTGATCCTCGGCGGACA 4518 |||| |||| || | || |||||| |||||||||| |||||||| ||| |||||| || Sbjct 1522 ACAGGTCACCAAGAGTGGCCCGAAGCCCTTCACCCCCGCCGAGGTCATCACCGGCGGCCA 1581 Query 4519 GCTCGTCGAGGCCCGCGCCGCCGGCCGTATCGGTATCGCCGCCGC-GGA-CAGCGTCAAG 4576 | |||||||||| ||||||||| ||| ||||| | |||| || ||| | ||| ||| Sbjct 1582 GATCGTCGAGGCACGCGCCGCCTCCCGGATCGGAGTGGCCGGTGCCGGATCGGCG--AAG 1639 Query 4577 GTGCTCGGCGTCGCCCTCACCGATGGCCAG 4606 ||||||||||| || ||||| | |||| Sbjct 1640 TCCCTCGGCGTCGCGCTGACCGACGCCCAG 1669 Score = 96.9 bits (106), Expect = 1e-15 Identities = 238/353 (67%), Gaps = 10/353 (3%) Strand=Plus/Plus Query 3434 GATCAACTCTCCCGGCGGCGAGGTGTGGGAAGCGTTGGCGATCCTGAACTCGCTGCGCCG 3493 ||||||||| || |||||| |||||||| | | |||||||| ||| |||||||| Sbjct 382 GATCAACTCGCCGGGCGGCAGCGTGTGGGACGGCATCGCGATCCTCAACGCGCTGCGCGC 441 Query 3494 CCACAAGGCACGGGTGGTCGCGATCGTCGAAGGCATCGCCGCT-TCGTCGGCCAGCTTCA 3552 |||| ||| ||| | | |||||||| || |||| ||| ||| |||||||||||| Sbjct 442 CCACCGGGCCACCGTGACCACCATCGTCGACGGTGTCGC-GCTGTCGGCGGCCAGCTTCA 500 Query 3553 TCGCCGCCGGCGTCGACGAACTACGCATCGTCGAGAACGCACAGTTCTTCATCCACAAGG 3612 ||||| |||| ||||| | || | ||||| ||| | | || ||| | | Sbjct 501 TCGCCATGGGCGGTGACGAGGTCGTGATGATGCGCAACGCGCAGATGATGATTCACGACG 560 Query 3613 CGTGGGGCATGTGCGTCGGCAACGAACACGACATGACGAGGATGGCCGCCGACCTCGCCC 3672 ||| ||| |||| |||||||| || ||| |||| || ||| || || Sbjct 561 CGTCGGGACTGTGTGTCGGCAATTCCAGTGAGATG--CAGGA-CTACGTCGATCTGCTCC 617 Query 3673 ACGAGGACCG---CAACATCGCCTCGATCTACGCGTCGAAGGCAGGACGCGATGTCGACT 3729 || || | | ||||||||| ||||||||||| ||||| || || | | ||| Sbjct 618 ACAAGACCAGCGACAACATCGCGTCGATCTACGCCGACAAGGCCGGTGGC-ACGCCGAAA 676 Query 3730 C-CTGGCTCGCCGATATGAGCGAGGAGACCTGGTTCTCCGCTGACGAGGCGGT 3781 | |||| ||| |||| | || ||||||| ||||| | ||||||||| Sbjct 677 CAGTGGCGCGCGCTGATGACGGCCGAAACCTGGTACTCCGACGCCGAGGCGGT 729 >seq249899 Length=916 Score = 105 bits (116), Expect = 2e-18 Identities = 208/302 (69%), Gaps = 12/302 (4%) Strand=Plus/Minus Query 2356 CTGCGCAAACTAGCACCACGTCCGCAGCGCACGATCTCGAAGATC---ACCGTCGCGCTG 2412 |||||||| || ||||| || |||||| ||| ||| | ||| || |||| | ||| Sbjct 568 CTGCGCAAGCTCGCACCGCGCCCGCAGGACACCATCGCCAAGTTCGTGACCGCC-CGC-- 512 Query 2413 GATGGCGGGCTGGAGTCGATCACCCAGGAGCCGCCCGTCGGCAAGCTCACGGCTGCCTCT 2472 ||||||||||| | |||| ||| | ||| | |||| || ||| | ||| Sbjct 511 GATGGCGGGCTCGTCGAGATCCGTCAGCACCCGATCCCCGGCGTGCAGACGACCGCC--- 455 Query 2473 GCGATCCCGGACGG-GTTCA--CCATCCCGGTCAACCGGCTCGTGGCGTACGTGCACGAG 2529 | | | ||| || | | | | |||||||| ||||||| |||| |||||||||| || Sbjct 454 GAGTTGAAGGATGGCGGTAAGGCGATCCCGGTGGACCGGCTGGTGGTGTACGTGCACAAG 395 Query 2530 CCAGAGCCCGGCCAATGGCAGGGAAACTCGATCCTCCGTCCGGCCTACAAGCACTGGATC 2589 | ||||||| | ||| ||| ||| | || || |||| ||||||||| | || Sbjct 394 CAGCAGCCCGGGAAGTGGATCGGACGGTCGCTGCTGCGGTCGGCGTACAAGCACGTGGTC 335 Query 2590 ATGAAGGACGAGCTCATGCGGATCCAGGCTGCGGCCGCCCGCCGCAACGGCATTGGCGTC 2649 | |||||||| || ||||| ||| |||| | | || |||||||||||| ||| || Sbjct 334 CTCAAGGACGACCTGATGCGCATCGAGGCGGTGCTGGCTCGCCGCAACGGCGCCGGCATC 275 Query 2650 CC 2651 || Sbjct 274 CC 273 Score = 84.2 bits (92), Expect = 7e-12 Identities = 118/166 (71%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 2005 CAGTGGGACCACACCGAGAAGGTGCCCGAGCTGCAGTGGCCCGAGTCGGTGAACGTCTTC 2064 ||||||||||||| |||| || | | | |||||||||| ||||||||| | || | Sbjct 889 CAGTGGGACCACAACGAGCGTGTCGCGGCGTTGCAGTGGCCGGAGTCGGTGCGCACCTAC 830 Query 2065 AGCCGCATGGCCCGCGGGGACGGCCGCGCGTCGTCGGTGCTTCGTGCGATCGGGCTTCCG 2124 |||| || || || |||| ||| | | || || | |||||| ||| ||| Sbjct 829 GGCCGGGTGTCCGTCGAGGACACCCGTGTGGCGGGCTTGTTGGCCGCGATCAAGCTGCCG 770 Query 2125 ATCCGCCGCACCACGTGGCGTCTCGACCAGAACGGCGCCCGCGACG 2170 |||| ||||| | || || ||||||| |||||||||||||||| Sbjct 769 ATCCAGCGCACGAAGTACCGCATCGACCAAAACGGCGCCCGCGACG 724 >seq20828 Length=2023 Score = 86.0 bits (94), Expect = 2e-12 Identities = 179/264 (68%), Gaps = 11/264 (4%) Strand=Plus/Plus Query 48924 AGCGCACCACAACCGAACGTGGCCTCGGGTGGCAACACCAGAAGGACCGCGACGCCCTAC 48983 ||| |||||| || |||| |||||||||| | ||| || ||||||| ||| | | Sbjct 1738 AGCTCACCACGACTCAACGGAACCTCGGGTGGAAGCACGAGCAGGACCGTGACCGGTTGC 1797 Query 48984 TCCGCGTCCACCTCGACGGCACACCATGCTTTTGGTGCAGCCACCCCATGTTCCGTGATC 49043 | || ||| |||| || | || |||| ||||| || ||| |||||||| || | Sbjct 1798 TTGCAGTGCACGTCGATGGATCGCCGTGCTGGTGGTGTGACCGCCCGATGTTCCGCGACC 1857 Query 49044 GCACAAAG---AACTGGGACTACGAC----CCAACATCGAGCGACCGGGCATCAGGATCA 49096 | ||| |||||||| ||| ||||| | | ||||| || | ||||| Sbjct 1858 ---CGAAGCGCAACTGGGATCACGCGATCGCCAACCCCAA-CGACCCCGCGCCCGGATCG 1913 Query 49097 CTCGCCGCCGACCACTCACACGCTCGCGCACAAGGCGGCACGAAAGCCGACCGACTCCTC 49156 || || ||||| ||| | |||||||| | |||||| | |||| || || ||| Sbjct 1914 CTGGCAGCCGATCACACCGTAGCTCGCGCCAACGGCGGCCAGCGCCCCGATCGGCTGCTC 1973 Query 49157 CACGGCTGGTGCAACAAGCAACGC 49180 ||||||||| |||||||| | ||| Sbjct 1974 CACGGCTGGGGCAACAAGAAGCGC 1997 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 157215396941032