Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20pachinus_20[genbank_20GCA_5F900068735.1_202017-04-26] 277,083 sequences; 279,264,790 total letters Query= NC_016655.1 Length=51342 Score E Sequences producing significant alignments: (Bits) Value seq263247 183 1e-41 seq127078 161 3e-35 seq76033 132 2e-26 seq84156 114 4e-21 seq61277 111 5e-20 seq197020 104 8e-18 seq180633 98.7 3e-16 seq189013 95.1 4e-15 >seq263247 Length=570 Score = 183 bits (202), Expect = 1e-41 Identities = 152/183 (83%), Gaps = 2/183 (1%) Strand=Plus/Minus Query 24820 ACGGAAAGCTGA-GCTGCCAGCTCTACCAGCGCAGCGCGGACGTATTCCTCGGCGTGCCG 24878 |||| |||||| ||| |||||||||||||||| | ||| | ||||||||||||||| Sbjct 355 ACGGCAAGCTGTCGCT-CCAGCTCTACCAGCGCTCGGGCGACATCTTCCTCGGCGTGCCG 297 Query 24879 TTCAATATCGCGAGCTACGCGCTGCTGACCCATTTCTTCGCGGACCAGCTCGGACTGAAG 24938 ||||| ||||| |||||||||||||| ||||| || ||||| | || ||| ||| || Sbjct 296 TTCAACATCGCCAGCTACGCGCTGCTCACCCACATCCTCGCGCAGCAATGCGGGCTGGAG 237 Query 24939 GTCGGCGAATTCATCTGGACCGGCGGCGACGTCCACCTGTATTCGAACCACGTCGAGCAG 24998 |||||||| ||||||||||||||||||||| |||||| ||||||||||| |||| ||| Sbjct 236 GTCGGCGAGTTCATCTGGACCGGCGGCGACTGCCACCTCTATTCGAACCATCTCGACCAG 177 Query 24999 GCG 25001 ||| Sbjct 176 GCG 174 >seq127078 Length=3502 Score = 161 bits (178), Expect = 3e-35 Identities = 423/628 (67%), Gaps = 53/628 (8%) Strand=Plus/Minus Query 5445 GGCTGTGGCGGAT---CTTGACCTGTGCATCCTTGGCCTGCCC----GAGAGCGATGGCC 5497 |||||| |||| | |||||||| || | ||||||| || |||||||| | Sbjct 603 GGCTGTTGCGGCTGTGCTTGACCT-TGAACTCTTGGCCGTCCTCAGAGAGAGCGACGCGG 545 Query 5498 ATCGTGTTGTCGCAGACCGTGGCGGTGATCGTCCGGCCGTACGTGGTGGAGAGGCTGCCG 5557 |||||||||||||| || ||||| | || || | ||||||||| || | |||| Sbjct 544 CGGGTGTTGTCGCAGACGGTCGCGGTCACGGTGCGCTTGAACGTGGTGGCGATGGAGCCG 485 Query 5558 TCGAGCGAGGTGGCGGCCAGCAGGTTGGGCCGGTAGGCGAAGCCGGTGACCTCGTCGTGG 5617 |||| ||| | ||||||||||||||| ||| | ||||||| | || |||| Sbjct 484 TCGAAGCTGGTCGTGGCCAGCAGGTTGGGACGGAACTCGAAGCC-----CTCCGGGGTGG 430 Query 5618 AGC--GTCTCAGGGACGGACACCTCGACCCAGGCC--TG-GCCGCCCTGCCGGAGGAGAC 5672 | | ||| || ||||| ||||| ||||||||| || |||||| || || || | Sbjct 429 TGATGGACTCGGGCACGGAGACCTCCACCCAGGCCACTGCGCCGCCGCGC---AGCAGTC 373 Query 5673 CGGCGCTGGTGATCTTCAGGCTGTCGCCGAGGATGTTGCTGACCGCTCCGAGCAGCCACT 5732 |||| | ||||| || ||||| ||||||||| | ||||| || ||||||| Sbjct 372 CGGCTGAGCTGATCGAGAGTGTGTCGTCGAGGATGTCGGCGACCGTGGTCAGGAGCCACT 313 Query 5733 CGCGGTACTGGTGCGGCTCGTACCCGTCGGTGAAGA---CCTTGAAGACGTGGTGGTTGT 5789 |||| |||| |||| |||||| ||| |||||||| || | | | ||||| || || Sbjct 312 CGCGATACTCGTGCTTCTCGTAGCCGGTGGTGAAGATGCCCATCACGGCGTGGGAGTCGT 253 Query 5790 CGGAGCGGGCGATGGCGGCGAGTCCGGGGACCGGCCGGGCGGCGACGGGGATGCCGTCAG 5849 | |||| ||||||| || || || | | |||| | | || Sbjct 252 C---GCGGACGATGGCCTGCTTCCCCTCGATCGTC--TTCCACGACATCGGCTCGTTCTC 198 Query 5850 CGTTGAGGCCAGTGG--CCTCG--GTGAGGTCGGCGGGGAACTCG---GCGAG-GACGGG 5901 || ||| |||| | ||| |||| ||||||||||| |||| ||||| | | Sbjct 197 GGTCGAG--AGGTGGCTCATCGAAGTGACGTCGGCGGGGATCTCGACCGCGAGTGGGCAG 140 Query 5902 GACCTTGACGGCCTCCCAGTCGAAGAG---GCGCTCAGCGACGTCACCGACTGGGATGGC 5958 ||| ||||| | ||||| ||| || ||||| ||||||| |||| ||||| | Sbjct 139 GAC----ACGGCGTTCCAGTTGAACAGCCTGCGCT---CGACGTCCTCGACCGGGATCGG 87 Query 5959 CCCCTCGTAGTGGTTCGA--GCGTTCGCCCTGGTCCTCTGCGCGGTAGTGCCAGGCGTGG 6016 ||| |||||| || || |||| ||||| ||||| || ||||||||||||||||| Sbjct 86 CCCGGGGTAGTGCTTGGACTCCGTT--CCCTGCTCCTCGGCCCGGTAGTGCCAGGCGTGA 29 Query 6017 CCCCGGTTGGCGGTCATGCCGATCAGGG 6044 |||| | | || |||||||||||| Sbjct 28 CCCCTCGCGTCAGTGTTGCCGATCAGGG 1 >seq76033 Length=7108 Score = 132 bits (146), Expect = 2e-26 Identities = 139/183 (76%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 24820 ACGGAAAGCTGAGCTGCCAGCTCTACCAGCGCAGCGCGGACGTATTCCTCGGCGTGCCGT 24879 ||||||| || |||||||||||| |||||||| || ||| | |||||||| ||||||| Sbjct 6359 ACGGAAAACTCTCCTGCCAGCTCTATCAGCGCAGTGCCGACCTGTTCCTCGGTGTGCCGT 6418 Query 24880 TCAATATCGCGAGCTACGCGCTGCTGACCCATTTCTTCGCGGACCAGCTCGGACTGAAGG 24939 |||| |||||| ||| || ||||| ||||| | | || | ||| ||| || ||| Sbjct 6419 TCAACATCGCGTCCTATGCCCTGCTCACCCACATGATGGCCGCGCAGGCCGGCCTCGAGG 6478 Query 24940 TCGGCGAATTCATCTGGACCGGCGGCGACGTCCACCTGTATTCGAACCACGTCGAGCAGG 24999 |||| || ||| | ||||||||||| ||| |||| | || ||||||||||| |||| Sbjct 6479 TCGGTGAGTTCGTGTGGACCGGCGGGGACTGCCACATCTACGACAACCACGTCGACCAGG 6538 Query 25000 CGA 25002 || Sbjct 6539 TGA 6541 >seq84156 Length=432 Score = 114 bits (126), Expect = 4e-21 Identities = 83/96 (86%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 26272 GTCGCCCACTGCGAGTCGTCCGGAAACTGGAGCATCAACACCGGCAACGGGTTCTACGGC 26331 |||||||| ||||||||| || |||||| |||||||||||||||||| | ||||||| Sbjct 310 GTCGCCCAGTGCGAGTCGACCAACAACTGGCACATCAACACCGGCAACGGCTACTACGGC 369 Query 26332 GGCCTGCAGTTCACGCAGTCCACCTGGGACGCGTTC 26367 || ||||||||| |||||||||||||||| || ||| Sbjct 370 GGACTGCAGTTCTCGCAGTCCACCTGGGAGGCCTTC 405 >seq61277 Length=456 Score = 111 bits (122), Expect = 5e-20 Identities = 133/181 (73%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 24820 ACGGAAAGCTGAGCTGCCAGCTCTACCAGCGCAGCGCGGACGTATTCCTCGGCGTGCCGT 24879 |||| ||||| |||||||| ||||| ||| |||||||| |||||||| ||||||| Sbjct 260 ACGGCAAGCTCTCGTGCCAGCTGTACCAACGCTCGGCGGACGTCTTCCTCGGGGTGCCGT 319 Query 24880 TCAATATCGCGAGCTACGCGCTGCTGACCCATTTCTTCGCGGACCAGCTCGGACTGAAGG 24939 |||| |||||| |||||| |||||| || | |||| | | |||| ||| | Sbjct 320 TCAACATCGCGTCCTACGCCCTGCTGGTGCACCTGGTCGCCCAGGTGGTCGGTCTGCAAC 379 Query 24940 TCGGCGAATTCATCTGGACCGGCGGCGACGTCCACCTGTATTCGAACCACGTCGAGCAGG 24999 ||||| |||||| ||| ||||| | |||||||| || |||||| ||||||||| Sbjct 380 CGGGCGACTTCATCCACACCCTGGGCGATGCGCACCTGTACTCCAACCACCTCGAGCAGG 439 Query 25000 C 25000 | Sbjct 440 C 440 >seq197020 Length=1949 Score = 104 bits (114), Expect = 8e-18 Identities = 215/319 (67%), Gaps = 26/319 (8%) Strand=Plus/Minus Query 29743 CGCCAGAACGGTAAGGGGTCTCTCCTGGAGGCCCGCGAGCTGGCTGGCCTGTTCCTCTTC 29802 || |||||||| ||||| | || | ||||| ||||||||||| || |||||||| ||| Sbjct 1744 CGGCAGAACGGCAAGGGCGCACTGATCGAGGCGCGCGAGCTGGCCGGGCTGTTCCTGTTC 1685 Query 29803 GGCGAGCGCCTGATCATCCACTCGGCGCACCAGTTCGATACCTCCAAGGAGGCCTTCGAG 29862 |||||| ||||| ||||| | ||||||| |||||| ||| | ||||| ||| Sbjct 1684 GGCGAGAAGATGATCGTCCACACCGCGCACCTGTTCGACACCGCGCTCGAGGCGTTCCGC 1625 Query 29863 CGAATCCTCTTCCTGATCGAGAACAACCCGGACTTCGAGCAAGAGGTCATGCGGGTCGAC 29922 || || | || ||| || | | || ||| |||| | ||||| | | || || Sbjct 1624 CGGCTCAAGCTGCTCATCCAGGAGACGCCCGACCTCGACCGCCGGGTCAAGAAGATC-AC 1566 Query 29923 CG-GTCACACGGTGAAGAGGGCATCGTGATGAAGAAGCCGAAGGGGTCCAACCTTCCACC 29981 || | | ||||| |||||||||||| | ||| ||| | | ||| Sbjct 1565 CGAGGCCCACGGCAAAGAGGGCATCGAGTTGATGAA----------------CGGCAACC 1522 Query 29982 GCAACGACTTCGGTTCCGTACACG-GACCAA--GGGCGGCGGCCGAGGCTTCACGGGTGA 30038 ||| | ||||||||| | || | | || |||||||||||||| ||| | ||||| Sbjct 1521 GCA-----TCCGGTTCCGTGCGCGCGGCGAACGCGGCGGCGGCCGAGGGTTCTCCGGTGA 1467 Query 30039 CACCCTGATCCTCGACGAG 30057 | | | ||| |||||||| Sbjct 1466 CCTCGTCATCTTCGACGAG 1448 >seq180633 Length=2589 Score = 98.7 bits (108), Expect = 3e-16 Identities = 72/84 (86%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 26278 CACTGCGAGTCGTCCGGAAACTGGAGCATCAACACCGGCAACGGGTTCTACGGCGGCCTG 26337 || ||||||||| |||| |||||| ||||||||||||||||||||||| ||||||| || Sbjct 879 CAGTGCGAGTCGACCGGCAACTGGGCCATCAACACCGGCAACGGGTTCTTCGGCGGCGTG 820 Query 26338 CAGTTCACGCAGTCCACCTGGGAC 26361 |||||| ||| |||||||||| Sbjct 819 CAGTTCGACCAGAACACCTGGGAC 796 >seq189013 Length=410 Score = 95.1 bits (104), Expect = 4e-15 Identities = 85/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 26257 CACGACTGGTCCGGAGTCGCCCACTGCGAGTCGTCCGGAAACTGGAGCATCAACACCGGC 26316 ||| ||||| || |||||||| |||||| ||| |||||| || | |||||||| Sbjct 142 CACAACTGGGACGCCGTCGCCCAGTGCGAGAGCGGCGGCAACTGGTCCACCGACACCGGC 83 Query 26317 AACGGGTTCTACGGCGGCCTGCAGTTCACGCAGTCCACCTGGGACGC 26363 ||||| |||| ||| |||||||||||||||||| |||||||| ||| Sbjct 82 AACGGCTTCTCCGGGGGCCTGCAGTTCACGCAGAGCACCTGGGCCGC 36 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 163632612283184