Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20pachinus_20[genbank_20GCA_5F900068735.1_202017-04-26] 277,083 sequences; 279,264,790 total letters Query= NC_018848.1 Length=37612 Score E Sequences producing significant alignments: (Bits) Value seq248049 192 1e-44 seq153771 179 9e-41 seq136878 113 1e-20 >seq248049 Length=1043 Score = 192 bits (212), Expect = 1e-44 Identities = 260/359 (72%), Gaps = 5/359 (1%) Strand=Plus/Plus Query 30169 ATGGCCGGAGACACCCCGATCACCGTTGTGGGCAACGTCGTTGCCGACCCCGAACTCAGG 30228 ||||| || |||||| ||||| || || |||||| | ||||| ||||| || | Sbjct 553 ATGGCAGGCGACACCATCATCACGGTGGTCGGCAACCTGACGGCCGATCCCGAGCTGCGC 612 Query 30229 TTCACCCCCGCCGGCGCCGCCGTCGCGAACTTCCGGCTCGCCTCGACCCCCCGCACGTTC 30288 |||||| || ||||||| ||||| ||||||||| |||| ||||||||||| ||| || Sbjct 613 TTCACCGCCTCCGGCGCGGCCGTTGCGAACTTCACCGTCGCATCGACCCCCCGGACGCTC 672 Query 30289 GACCGCACCGCCAACGAATGGCGAGACGGCGAGACCCTGTTCCTGTCCGTCTCCGTATGG 30348 ||||||||| | ||| ||| ||||||||| |||| |||||| | | | | ||| Sbjct 673 GACCGCACCAGCGGCGAGTGGAAGGACGGCGAGGCCCTCTTCCTGCGCTGCAACATCTGG 732 Query 30349 CGCCAGCAGGCCGAGAACGTCGCCGGATCCATCCACCGCGGCGACCGCGTGATCGTCGTC 30408 || ||| |||||||||||| | | || || ||||||| |||||| |||||| | Sbjct 733 CGGCAGGCTGCCGAGAACGTCACGGAGTCGCTCACCCGCGGCTCCCGCGTCATCGTCACC 792 Query 30409 GGCACCCTCGCCCAGCGCACGTACGAG---AAGGACGGCGAG-CGCCGAGCGTCCTACGA 30464 ||| ||| ||||||| | |||| ||||| |||||| || | |||| | ||| Sbjct 793 GGCCGGCTCAAGCAGCGCAGCTTCGAGACCAAGGAAGGCGAGAAGCGCACCGTCAT-CGA 851 Query 30465 GGTCAAGGCCGAGGAAGTCGGCCCCGCGCTCAAGAACGCGACCGCCACTGTCACCAAGG 30523 | | ||| ||| || |||||||| |||| | |||||||||||| |||| ||||| Sbjct 852 GCTGGAGGTCGACGAGATCGGCCCCTCGCTGCGGTACGCGACCGCCAAGGTCAACAAGG 910 >seq153771 Length=831 Score = 179 bits (198), Expect = 9e-41 Identities = 254/351 (72%), Gaps = 11/351 (3%) Strand=Plus/Minus Query 30174 CGGAGACACCCCGATCACCGTTGTGGGCAACGTCGTTGCCGACCCCGAACTCAGGTTCAC 30233 |||||||||| ||||| | || |||||| |||| | ||||||||| || ||||||| Sbjct 441 CGGAGACACCTACGTCACCATCGTCGGCAACCTCGTCGACGACCCCGAGCTGCGGTTCAC 382 Query 30234 CCCCGCCGGCGCCGCCGTCGCGAACTTCCGGCTCGCCTCGACCCCCCGCACGTTCGACCG 30293 ||| | |||||||| ||||| |||||||| ||||||| ||||| ||||||||| |||| Sbjct 381 GCCCTCGGGCGCCGCAGTCGCCAACTTCCGCATCGCCTCCACCCCGCGCACGTTCAACCG 322 Query 30294 CACCGCCAACGAATGGCGAGACGGCGAGACCCTGTTCCTGTCCGTCTCCGTATGGCGCCA 30353 ||||||| ||| ||||| ||| | ||||||| || ||| || ||||| || Sbjct 321 TCAGACCAACGACTGGGAGGACGGTGAGGGCATGTTCCTCACCTGCTCGGTGTGGCGTCA 262 Query 30354 GCAGGCCGAGAACGTCGCCGGATCCATCCACCGCGGCGACCGCGTGATCGTCGTC--GGC 30411 | ||||||||||||||| | ||| | || |||||| |||| |||||||| || Sbjct 261 GGCGGCCGAGAACGTCGCGGAGTCCTTGCAGCGCGGCATGCGCG---TCGTCGTCCAGGG 205 Query 30412 AC-CCTCGCCCAGCGCACGTACGAGA---AGGACGGCGAG-CGCCGAGCGTCCTACGAGG 30466 || ||| |||||| ||||||| || |||||| || | ||| || |||| Sbjct 204 ACGGCTCAAGTCGCGCACCTACGAGACCCGCGAGGGCGAGAAGCGCACCGT-CTTCGAGA 146 Query 30467 TCAAGGCCGAGGAAGTCGGCCCCGCGCTCAAGAACGCGACCGCCACTGTCA 30517 || ||| |||||| ||||| || || ||| ||| || |||| |||| Sbjct 145 TCGAGGTCGAGGAGGTCGGGCCGAGCCTGAAGTTCGCCACGGCCAAGGTCA 95 >seq136878 Length=1830 Score = 113 bits (124), Expect = 1e-20 Identities = 243/355 (68%), Gaps = 9/355 (3%) Strand=Plus/Minus Query 30169 ATGGCCGGAGACACCCCGATCACCGTTGTGGGCAACGTCGTTGCCGACCCCGAACTCAGG 30228 |||||||| ||||| ||||||| | || ||| | || || |||||||| | Sbjct 405 ATGGCCGGCGACACGATCCTCACCGTCATCGGGAACCTGACCGCGGATCCCGAACTGCGT 346 Query 30229 TTCACCCCCGCCGGCGCCGCCGTCGCGAACTTCCGGCTCGCCTCGACCCCCCGCACGTTC 30288 |||||||| |||| || || || || |||||| | || || || || || | |||| Sbjct 345 TTCACCCCGTCCGGTGCGGCGGTGGCCAACTTCACCGTTGCGTCCACGCCGCGGATGTTC 286 Query 30289 GACCGCACCGCCAACGAATGGCGAGACGGCGAGACCCTGTTCCTGTCCGT-CTCCGTATG 30347 ||||| ||||||||||| |||||||||| | |||||| || | || | | | || Sbjct 285 GACCGTCAGACCAACGAATGGAAAGACGGCGAGGCACTGTTCATG-CGGTGCAGCATCTG 227 Query 30348 GCGCCAGCAGGCCGAGAACGTCGCCG-GATCCATCCACCGCGGCGACCGCGTGATCGTCG 30406 ||| || |||||||||||| || | || || || | || | || || ||||| | Sbjct 226 GCGGGAGGCGGCCGAGAACGTGGCGGAGAGCC-TCACCAAGGGTGCTCGTGTCATCGT-G 169 Query 30407 TCGGCAC-CCTCGCCCAGCGCACGTACGAGA---AGGACGGCGAGCGCCGAGCGTCCTAC 30462 |||| | ||| |||||| | ||||| | || || ||| || || | Sbjct 168 TCGGGTCGGCTCAAGCAGCGCTCCTACGAAACCCGCGAGGGTGAGAAGCGCACGGTGGTC 109 Query 30463 GAGGTCAAGGCCGAGGAAGTCGGCCCCGCGCTCAAGAACGCGACCGCCACTGTCA 30517 ||| || ||| |||||| ||||| ||| |||| ||| |||||||||||| |||| Sbjct 108 GAGCTCGAGGTCGAGGAGGTCGGTCCCTCGCTGAAGTACGCGACCGCCAAGGTCA 54 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 119841177567604