Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20pachinus_20[genbank_20GCA_5F900068735.1_202017-04-26] 277,083 sequences; 279,264,790 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq10526 187 2e-42 seq15523 174 1e-38 seq28654 123 2e-23 seq76306 98.7 8e-16 seq27511 95.1 9e-15 seq133356 89.7 4e-13 >seq10526 Length=5062 Score = 187 bits (206), Expect = 2e-42 Identities = 483/731 (66%), Gaps = 9/731 (1%) Strand=Plus/Minus Query 27695 GGAACCGTGGTGGCCGCTTACTTTGTCGAGTGGGGTGTGTATGGTAG-ACAGTATCCGGC 27753 |||| || |||| || ||||| || || |||||||| ||| ||| | | | ||| Sbjct 4135 GGAAAAGTTGTGGGTGCCTACTTCGTAGAATGGGGTGTCTATCCTAGGAAATTCCCCGTG 4076 Query 27754 CAACAAACTACCCATACCAAATCTGACACATTTGCTGTACGGCTTTGTGCCCATTTGCGG 27813 | | | |||| ||||| ||||| || |||||||| ||||||||| | || |||||||| Sbjct 4075 GATCGTA-TACCTATACCTAATCTTACTCATTTGCTCTACGGCTTTATTCCAATTTGCGG 4017 Query 27814 CGGAGACGGTATCAACGATAGCCTAAAACAGATCCCCAATTC--TTTTGAGGTCCTCCAA 27871 ||| ||||| || || ||||| ||||| ||||| || | ||| | | || || Sbjct 4016 CGGTGACGGCATTAATGATAGTTTAAAAGAGATCG--AAGGCAGTTTCCAAGCACTACAG 3959 Query 27872 AAGTCATGCTCAAACCGAGCCGACTTTAGTGTGAGCATACACGATATATGGGGCGCGCTG 27931 || || ||| | ||||| | || || |||||| ||||| || | Sbjct 3958 CGATCCTGTAGCGGCCGTGAGGACTTCAAAGTCTCAATCCACGATCCATGGGCAGCATTA 3899 Query 27932 CAAAAACCGCAAAAGGGTGTAGAGGCGTGGAACGAGCCGTACAAGGGTAACTTTGGCCAG 27991 |||||||| ||||| || | | ||||||||||| ||||| || ||||||||||| Sbjct 3898 CAAAAACCACAAAAAGGATTGTCTTCATGGAACGAGCCCTACAAAGGCAACTTTGGCCAA 3839 Query 27992 TTGATGGCCATCAAACGACACCATCCCCACCTATCCATACTGCCCTCGATTGGTGGGTGG 28051 || ||| | | |||| | || || | | || || ||||| |||||||||||| Sbjct 3838 TTAATGTCACTAAAACAAGCCCGCCCTGAATTGAAGATTCTTCCCTCTATTGGTGGGTGG 3779 Query 28052 ACTCTGAGCGATCCATTCTTTTTTATGCACGACCCGGCCAAGCGTGCCGTGTTTGTAGAG 28111 || || |||||| ||||| ||| | ||| | ||| | | ||||| || Sbjct 3778 ACGCTTGCCGATCCTTTCTTCTTTTTAGTTGACAAATCTAAGAGAACACGATTTGTGCAG 3719 Query 28112 TCTGTGCGCGAATTTCTGCAAACGTGGAAGTTCTTTGACGGAGTCGATTTGGACTGGGAG 28171 || || || ||||| | ||| ||||| ||||| || || || ||| | || |||||| Sbjct 3718 TCAGTAAAGGAGTTTCTTCTAACATGGAAATTCTTCGATGGTGTTGATATCGATTGGGAG 3659 Query 28172 TTTCCGGGTGGAAAGGGAGCCAACCCCGCGATCGGTAACCCCGACATTGACGCAAAAACG 28231 || || ||||| || || || ||||| | |||||| ||| || || | | Sbjct 3658 TTCCCTGGTGGCAAAGGTGCTAACCCTGACCTCGGTAGCCCAGA---AGATGGTGATTGT 3602 Query 28232 TACACCGCGCTGTTGCGCGAACTAAGATTTATGCTGGACGAGTTGGCGGaaaaaaaCGAT 28291 || || || ||| || | ||||| || ||| | | | || || | | Sbjct 3601 TATGTAAGTTTGATGAAAGAATTACGTGAGATGCTCGATGAGCTCTCTGCTAAGAATGGT 3542 Query 28292 CGCGTCTACCAACTAACCACCGCTATTAGCGCCGGGCATGATAAAATACAAGTGGTCAAC 28351 ||| || |||| | ||||||||||| || |||||||| ||||| || || Sbjct 3541 AAGAAATACGAATTAACTTCTGCTATTAGCGCTGGATGGGATAAAATCCAAGTTGTTGAC 3482 Query 28352 TACGCTTCGGCCCAAAAACATCTGGACCACATTTTCGTTATGAGTTACGATTTTAGGGGC 28411 || | | ||| ||||| || |||| || |||||| | ||||||||||| || | ||| Sbjct 3481 TATGGTAAGGCTCAAAATTATATGGATCATATTTTCTTGATGAGTTACGACTTCAAGGGA 3422 Query 28412 GCCTGGTCCAA 28422 |||||||| || Sbjct 3421 GCCTGGTCAAA 3411 >seq15523 Length=5906 Score = 174 bits (192), Expect = 1e-38 Identities = 188/249 (76%), Gaps = 0/249 (0%) Strand=Plus/Minus Query 7828 CGTCTGCTCACGTTCAAGGACTGGCCGAAGAGTATAAAGCAGAAACCAAAGCAGCTTGCC 7887 || |||| || |||| |||||||| ||||| |||||||| || || | || ||| Sbjct 5842 CGCCTGCGCAGCTTCAGCGACTGGCCTCGCAGTATGAAGCAGAAGCCTGAGGAACTCGCC 5783 Query 7888 GAAGCTGGATTATACTACACGGGCCGCGGTGATATGACAAAGTGTTTCTACTGTGACGGG 7947 ||||| ||||| | |||||| |||| ||||| | || ||||| |||||||||||||| Sbjct 5782 GAAGCGGGATTCTTCTACACCGGCCAGGGTGACAAAACTAAGTGCTTCTACTGTGACGGC 5723 Query 7948 GGTCTCAAAGATTGGGAGGAAAACGATATACCGTGGGAGCAACACGCGCGCTGGTTTGAT 8007 || ||||| || |||||| | |||| | ||||||||||| ||||| |||||||| || Sbjct 5722 GGACTCAAGGACTGGGAGAACGACGACGTGCCGTGGGAGCAGCACGCACGCTGGTTCGAC 5663 Query 8008 AAATGCGCATATGTCAAACTAGTCAAAGGGGAGGAATATGTTCAGAAGGTAATTACTGAA 8067 ||||| || || | || |||||||| || || || |||||||| || || ||| Sbjct 5662 CGGTGCGCCTACGTGCAGCTGGTCAAAGGCCGAGAGTACGTCCAGAAGGTGATCACGGAA 5603 Query 8068 GCGTGCGCC 8076 ||||||||| Sbjct 5602 GCGTGCGCC 5594 >seq28654 Length=3315 Score = 123 bits (136), Expect = 2e-23 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || ||||| ||||| || || || |||||||||||||| || ||||| ||| | || Sbjct 2397 AGACGCAATACCAAGTGAAGAGTAGATTCTTTTTGAATATTATAGTCAGAAAGAGTGCGT 2456 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| ||||| ||||| || || || |||| || |||||||| | |||| ||| ||| Sbjct 2457 CCGTCTTCCAATTGCTTTCCAGCGAAAATCAAACGTTGTTGATCTGGAGGAATGCCTTCC 2516 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||| || ||||||| | | || || || | || || |||| ||| Sbjct 2517 TTGTCTTGAATTTTGGCTTTTACATTTTCAATAGTATCGGAAGGTTCAACTTCCAAAGTA 2576 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || ||||| ||||| | ||||| ||||| |||||||| Sbjct 2577 ATGGTTTTACCCGTAAGTGTTTTCACAAAGATCTGCAT 2614 Score = 122 bits (134), Expect = 7e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 ||||| | |||||||| || |||||||| || || ||||||||||| ||||||||| Sbjct 2160 CCGCCACGAAGCCGCAATACTAAATGTAGGGTAGATTCCTTTTGAATATTATAATCAGAT 2219 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 | | || | || |||| || || || ||||| || || | ||||||||| | |||| Sbjct 2220 AATGTACGGCCATCTTCCAGTTGTTTTCCAGCAAAAATAAGCCTCTGTTGATCTGGGGGA 2279 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | ||||| ||||| |||||| || ||| | | || || |||| ||| ||| Sbjct 2280 ATACCCTCTTTGTCTTGGATCTTTGCCTTCACATTTTCGATAGTGTCGGACGGCTCTACC 2339 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || | || || |||||||| || | ||| || ||||| |||||||| Sbjct 2340 TCTAAAGTGATGGTTTTTCCTGTAAGAGTCTTAACAAAGATCTGCAT 2386 Score = 109 bits (120), Expect = 4e-19 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | ||| || || || || |||||| ||||||||||||||||| | | | ||| Sbjct 1257 AGACGAAGCACTAAGTGCAGGGTTGACTCTTTCTGAATATTGTAATCAGACAAAGTGCGA 1316 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || ||||| ||||| || ||||| || || |||||||| || | ||| | ||||||| Sbjct 1317 CCATCTTCCAATTGCTTTCCAGCAAAAATGAGACGCTGTTGGTCTGGGGGGATGCCCTCC 1376 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 || || || || ||| ||| | | | || || | || || |||| ||| Sbjct 1377 TTATCCTGTATTTTAGCTTTGACATTCTCGATTGTGTCAGATGGTTCTACTTCCAGGGTA 1436 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || ||||| ||||| ||||| ||||| || ||||| Sbjct 1437 ATGGTCTTTCCAGTCAATGTTTTGACAAATATTTGCAT 1474 Score = 109 bits (120), Expect = 4e-19 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||| || | ||| || || ||| ||||| || ||||| ||||| || | ||| Sbjct 1713 AGACGCAGTACTAGATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCAGAGAGGGTGCGA 1772 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || ||||| |||||||| ||||| || || ||||| ||||| | || | |||||| Sbjct 1773 CCATCTTCCAATTGCTTACCAGCAAAGATAAGACGCTGCTGATCAGGTGGGATGCCCTCT 1832 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| || || ||||||| | | || || || | ||||| |||| ||| Sbjct 1833 TTGTCTTGGATTTTAGCTTTTACATTTTCAATAGTATCAGAGGGTTCCACTTCCAGGGTA 1892 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || ||||| || | ||||| |||||||||||||| Sbjct 1893 ATGGTCTTTCCAGTTAGGGTTTTAACAAAAATCTGCAT 1930 Score = 102 bits (112), Expect = 6e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 |||||||| || || || || || ||| | || | || || ||||| ||||| ||||| Sbjct 600 TCTTTTTGGATGTTATAGTCCGACAGAGTGCGGCCATCCTCTAACTGTTTACCAGCAAAG 659 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 || || |||||||| || | ||||| |||||||||||| ||||| || ||| Sbjct 660 ATGAGACGCTGTTGGTCTGGGGGAATGCCCTCCTTGTCTTGGATCTTAGCCTTAACATTT 719 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755 | | || || || | ||||||||||| || || || || || || | ||| || ||| Sbjct 720 TCGATAGTGTCGGATGGCTCCACCTCCAAAGTGATGGTCTTCCCAGTAAGAGTCTTAACA 779 Query 48756 AAAATCTGCAT 48766 || |||||||| Sbjct 780 AAGATCTGCAT 790 Score = 96.9 bits (106), Expect = 3e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||| || ||||| || || ||||||||| || ||||| ||||| || | ||| Sbjct 1485 AGACGCAGTACTAAATGAAGGGTAGACTCTTTTTGGATGTTGTAGTCAGACAGGGTGCGA 1544 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || || | |||||| || ||||| || || || |||||||| | ||||| ||||| Sbjct 1545 CCATCTTCTAGCTGCTTGCCAGCAAAGATAAGACGTTGTTGATCTGGGGGAATACCCTCT 1604 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 || || |||||| |||||| | | | || || | ||||||||||| || Sbjct 1605 TTATCTTGAATCTTAGCCTTTACATTTTCAATGGTGTCAGATGGCTCCACCTCCAGAGTT 1664 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || || || | || || ||||| || ||||| Sbjct 1665 ATAGTCTTGCCTGTTAGTGTCTTGACAAATATTTGCAT 1702 >seq76306 Length=316 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || |||||||| ||||| || || || | || || || || ||||| || || || Sbjct 283 CCACCCCTTAGACGCAAAACTAAGTGCAAAGTAGATTCCTTCTGGATATTATAGTCTGAC 224 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 | | || | || |||| ||||| ||||| || ||||||| |||||||| | ||| Sbjct 223 AATGTGCGCCCATCTTCCAGTTGCTTTCCGGCGAAAATCAGTCTTTGTTGATCTGGAGGA 164 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | ||| |||||||| ||||||| ||||| | | | || || || ||||| Sbjct 163 ATGCCTTCCTTGTCTTGAATCTTTGCCTTTACGTTTTCGATTGTATCAGAAGCTTCCACT 104 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||| || || ||||| || || ||||||||||| || || ||||| Sbjct 103 TCCAATGTGATGGTTTTCCCAGTTAAAGTTTTTACGAAGATTTGCAT 57 >seq27511 Length=800 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || ||||| || |||| |||||| || | || || || |||||||| ||||| || Sbjct 443 CCACCCCTAAGGCGCAGCACCAAGTGCAAAGTAGATTCCTTCTGAATATTATAATCTGAC 384 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 | | || | || |||| ||| || || ||||| || || | |||||| || | ||| Sbjct 383 AATGTACGTCCATCTTCCAGCTGTTTTCCTGCAAAAATAAGCCTCTGTTGGTCAGGAGGA 324 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | ||| || ||||| ||||||| || ||| | | | || || || ||||| Sbjct 323 ATGCCTTCTTTGTCTTGAATCTTTGCCTTAACATTTTCTATTGTATCAGAAGCTTCCACT 264 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||| || || ||||| || |||| || ||||||||||| ||||| Sbjct 263 TCCAAAGTGATAGTTTTGCCAGTCAGTGTCTTTACAAAAATTTGCAT 217 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || || || ||||||| |||| || | || || || ||||||||||| |||||| Sbjct 671 CCACCTCTCAGCCGCAGTACCAGGTGCAAAGTTGATTCCTTCTGAATATTGTAGTCAGAT 612 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || | || | || || | |||||| || ||||| || |||| || ||||| | |||| Sbjct 611 AGTGTGCGTCCATCTTCAAGCTGCTTTCCAGCAAAAATAAGTCTTTGCTGATCTGGGGGA 552 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | ||||| || || ||| || || ||| | | | || || || ||||| Sbjct 551 ATACCCTCTTTATCCTGAATTTTCGCCTTAACATTTTCAATTGTATCAGAAGCTTCCACT 492 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||| || || || || || |||| || ||||||||||| ||||| Sbjct 491 TCCAAAGTGATAGTCTTGCCAGTCAGTGTCTTTACAAAAATTTGCAT 445 >seq133356 Length=434 Score = 89.7 bits (98), Expect = 4e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 7603 AACGGGTTTTATTATTTGGGTCGAAGAGACGAGGTGCGTTGCGCGTTTTGTAAAGTGGAA 7662 || || || |||||| |||| || | || || || || ||||||||||||||||| ||| Sbjct 224 AATGGCTTCTATTATCTGGGCCGCGGCGATGAAGTACGCTGCGCGTTTTGTAAAGTAGAA 165 Query 7663 ATCATGCGGTGGGTCGAAGGTGACGATCCGGAGAAGGACCATCGGAAGTGGGCACCGCAG 7722 || ||| ||||| | || |||||||| | |||||||| | | ||||| || ||| Sbjct 164 ATTATGAAATGGGTTGCGGGCGACGATCCCGCCAAGGACCACCAGCGCTGGGCGCCTCAG 105 Query 7723 TGTCCGTTTCTGCG 7736 || || || ||||| Sbjct 104 TGCCCTTTCCTGCG 91 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379651193128809