Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20pachinus_20[genbank_20GCA_5F900068735.1_202017-04-26] 277,083 sequences; 279,264,790 total letters Query= NC_019406.1 Length=279967 Score E Sequences producing significant alignments: (Bits) Value seq45058 107 3e-18 seq84152 104 4e-17 seq207634 95.1 2e-14 seq50670 89.7 9e-13 seq44874 89.7 9e-13 seq187851 84.2 4e-11 >seq45058 Length=1605 Score = 107 bits (118), Expect = 3e-18 Identities = 112/147 (76%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 172329 GACGATCAGGATCGGGAAGATGAAGCGCATGCCGAACACGGCGATGATGATGCCGACGCC 172388 |||||||| | |||||| | | ||||| ||||||||||||||||||||||| ||| Sbjct 37 GACGATCACCAGCGGGAACACCAGCCGCATTCCGAACACGGCGATGATGATGCCCACGGT 96 Query 172389 CAGGAAGAGCTTCTTCCACTTCTCGTCCCAATTCTGAAGAACGTGGGCGTTGACGACGGC 172448 |||||| | ||||| ||| |||| | |||| || ||| ||||||| ||| || Sbjct 97 CAGGAACATCTTCTGCCAGAACTCGCTCATCTTCTCCAGCACGGTCGCGTTGATGACCGC 156 Query 172449 GTTGTCGAACGACAGCGAGATTTCCAG 172475 ||||||||| || ||||||| ||||| Sbjct 157 GTTGTCGAAGGAGAGCGAGACCTCCAG 183 Score = 87.8 bits (96), Expect = 3e-12 Identities = 145/206 (70%), Gaps = 4/206 (2%) Strand=Plus/Plus Query 171099 GCGTTGCGGACCAGACCGAAGTTCTGGTTGCGGGCAGCGGCTTCGTGGATCGTCACGGCG 171158 |||||||||||| |||||||| ||| ||||| | || |||| ||||| |||| | Sbjct 522 GCGTTGCGGACCTGACCGAAGGACTGCGAGCGGGAGTCCGCGTCGTAGATCGAGACGGGG 581 Query 171159 ACGATGATCTCGTCGACGGCCG--GGTTCAGCAGGCTGGTGTCGATGGTGATGCGCTCAT 171216 | | ||| ||||| ||| || | || | | ||| || | |||| ||| | Sbjct 582 AACACGATGGAATCGACCTCCGGCGGCACCGCCGACAGGT-TC-ACCTTGATCACCTCGT 639 Query 171217 CATCGCCAGCGCCGTCGCCGGTCAGGTTGTCGCCCGAGTGGACGATCGCGCCGTCGGCGG 171276 | ||||| |||| |||||||| |||||||| || ||| |||||| |||||| | | Sbjct 640 CGTCGCCCTCGCCCTCGCCGGTGAGGTTGTCACCGAGGTGCTCGATCGAGCCGTCCGGCG 699 Query 171277 ACTTCAGGTTGCCGTAGAACACGAAG 171302 || |||||||| | |||| |||||| Sbjct 700 ACGTCAGGTTGTTGAAGAAGACGAAG 725 >seq84152 Length=5826 Score = 104 bits (114), Expect = 4e-17 Identities = 120/162 (74%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 169242 AGCGTGGTGCGCACAGCCATCATGCCGCAGCCGATGTCGACGCCGACCGCGTACGGGATC 169301 || ||||| || || || ||||||||||| ||||||||||| ||||||||| |||||| Sbjct 4596 AGGGTGGTCCGGACGGCGATCATGCCGCACCCGATGTCGACCCCGACCGCGGCCGGGATG 4537 Query 169302 ACCGCATCCTTGGTCGGGATCACCGAACCAACGGCTGCGCCGTACCCGGCGTGGACGTCG 169361 || || || |||||||| || | ||| || || | || | ||| ||| | || Sbjct 4536 ACGGCGTCGACCGTCGGGATGACGGTACCGACCGCGGATCCCTTGCCGTAGTGCGCATCC 4477 Query 169362 GGCATCACCGCGACGTGCTTGAACACGAACGGCAGCCCGGCG 169403 ||||||| ||| |||||| | |||||| |||||| | ||| Sbjct 4476 GGCATCAACGCCACGTGCGGGTGCACGAAGGGCAGCGCTGCG 4435 >seq207634 Length=279 Score = 95.1 bits (104), Expect = 2e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 113965 CGCATCAGGTCTTCGATGAAGTGTGGGTCATCGACCCACTCGTCGAACTTCTCGGCGTTG 114024 |||||| ||| ||||||||| | || || ||||| ||| || ||||| |||| Sbjct 276 CGCATCGCGTCCTCGATGAAGCCTTTCTCGTCCTTCCACTGGTCCCACGTCTCGAGGTTG 217 Query 114025 ACGCTCGACAGGCAGCAGACCGCCGTACGCTTCTTGCCTTGATCATCGCGCCCGGTCGCC 114084 | |||||||||||||||||| || || | ||||| ||| ||||||||||||| | Sbjct 216 AGCGACGACAGGCAGCAGACCGCGGTGCGGTCGTTGCCGAGATGGTCGCGCCCGGTCGGC 157 Query 114085 AGCGTGATCTCGGTGCA 114101 | |||||||||| |||| Sbjct 156 AACGTGATCTCGCTGCA 140 >seq50670 Length=586 Score = 89.7 bits (98), Expect = 9e-13 Identities = 112/154 (73%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 113554 GGGTTCTTCACGGGGAAGGAGCCCGACAGCGTCTTATGCAGATAGGCGTTGGCGCGCCAC 113613 |||||||| | | |||| ||||||||||||||| ||| ||| |||||| | | Sbjct 376 GGGTTCTTGATCGAGAAGCTGCCCGACAGCGTCTTGTGCGTGTAGATGTTGGCCGGGATC 435 Query 113614 GGCTCGATCGACGGCGAGGTATTGCCGCAGAGGATAGACGACGACGCGTTGGGAGCGATC 113673 |||||||| ||| |||| |||||||| ||| || ||||||| | || |||||| Sbjct 436 GGCTCGATGCACGCGCAGGTGCCGCCGCAGATGATCGAGATCGACGCGGTCGGCGCGATC 495 Query 113674 GCCATCTTGTGGGCGAAGCGCTCGCCCGTGCCGA 113707 ||||||||| | ||| ||||| || ||||| Sbjct 496 GCCATCTTGCAGCTGAACCGCTCCATCGCGCCGA 529 >seq44874 Length=1860 Score = 89.7 bits (98), Expect = 9e-13 Identities = 120/165 (73%), Gaps = 8/165 (5%) Strand=Plus/Plus Query 172318 GCCGCGAAGGCGACGATCAGGATCGGGAAGATGAAGCGCATGCCGAACACGGCGATGATG 172377 || |||| | ||||||||| | ||| | | | ||||||||||| |||||||||| | Sbjct 1442 GCGGCGACGAAGACGATCAGCAGCGGCAGCAGCAGCCGCATGCCGAAGACGGCGATGACG 1501 Query 172378 ATGCCGACGCCCAGGAAGAGCTTCTTCC---ACT-TCTCGTCCCAATTCTGAAGAACGTG 172433 ||||||||| ||||||| ||||| || ||| ||| ||| || || ||| Sbjct 1502 ATGCCGACGGTGAGGAAGATCTTCTGCCAGAACTCACTCATCC----GCTCCAGCACGGT 1557 Query 172434 GGCGTTGACGACGGCGTTGTCGAACGACAGCGAGATTTCCAGGAT 172478 ||||||| || ||||||||||| ||||| |||| || ||||| Sbjct 1558 CGCGTTGATCACCGCGTTGTCGAAGGACAGGGAGACCTCGAGGAT 1602 >seq187851 Length=343 Score = 84.2 bits (92), Expect = 4e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 132963 GCGGGGTGGAGCAGTCCGGTAGCTCGTTTGGCTCATAACCAAAAGGTCGAGGGTTCAAAT 133022 |||||||||||||| |||||||||| | ||||||||||| | |||||| ||||||||| Sbjct 76 GCGGGGTGGAGCAGCTCGGTAGCTCGCTGGGCTCATAACCCAGAGGTCGCAGGTTCAAAT 17 Query 133023 CCCTCCCCCGCATCCA 133038 || ||||||| ||| Sbjct 16 CCTGTCCCCGCAACCA 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 892663879482360