Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heliconius_20pachinus_20[genbank_20GCA_5F900068735.1_202017-04-26]
277,083 sequences; 279,264,790 total letters
Query= NC_019406.1
Length=279967
Score E
Sequences producing significant alignments: (Bits) Value
seq45058 107 3e-18
seq84152 104 4e-17
seq207634 95.1 2e-14
seq50670 89.7 9e-13
seq44874 89.7 9e-13
seq187851 84.2 4e-11
>seq45058
Length=1605
Score = 107 bits (118), Expect = 3e-18
Identities = 112/147 (76%), Gaps = 0/147 (0%)
Strand=Plus/Plus
Query 172329 GACGATCAGGATCGGGAAGATGAAGCGCATGCCGAACACGGCGATGATGATGCCGACGCC 172388
|||||||| | |||||| | | ||||| ||||||||||||||||||||||| |||
Sbjct 37 GACGATCACCAGCGGGAACACCAGCCGCATTCCGAACACGGCGATGATGATGCCCACGGT 96
Query 172389 CAGGAAGAGCTTCTTCCACTTCTCGTCCCAATTCTGAAGAACGTGGGCGTTGACGACGGC 172448
|||||| | ||||| ||| |||| | |||| || ||| ||||||| ||| ||
Sbjct 97 CAGGAACATCTTCTGCCAGAACTCGCTCATCTTCTCCAGCACGGTCGCGTTGATGACCGC 156
Query 172449 GTTGTCGAACGACAGCGAGATTTCCAG 172475
||||||||| || ||||||| |||||
Sbjct 157 GTTGTCGAAGGAGAGCGAGACCTCCAG 183
Score = 87.8 bits (96), Expect = 3e-12
Identities = 145/206 (70%), Gaps = 4/206 (2%)
Strand=Plus/Plus
Query 171099 GCGTTGCGGACCAGACCGAAGTTCTGGTTGCGGGCAGCGGCTTCGTGGATCGTCACGGCG 171158
|||||||||||| |||||||| ||| ||||| | || |||| ||||| |||| |
Sbjct 522 GCGTTGCGGACCTGACCGAAGGACTGCGAGCGGGAGTCCGCGTCGTAGATCGAGACGGGG 581
Query 171159 ACGATGATCTCGTCGACGGCCG--GGTTCAGCAGGCTGGTGTCGATGGTGATGCGCTCAT 171216
| | ||| ||||| ||| || | || | | ||| || | |||| ||| |
Sbjct 582 AACACGATGGAATCGACCTCCGGCGGCACCGCCGACAGGT-TC-ACCTTGATCACCTCGT 639
Query 171217 CATCGCCAGCGCCGTCGCCGGTCAGGTTGTCGCCCGAGTGGACGATCGCGCCGTCGGCGG 171276
| ||||| |||| |||||||| |||||||| || ||| |||||| |||||| | |
Sbjct 640 CGTCGCCCTCGCCCTCGCCGGTGAGGTTGTCACCGAGGTGCTCGATCGAGCCGTCCGGCG 699
Query 171277 ACTTCAGGTTGCCGTAGAACACGAAG 171302
|| |||||||| | |||| ||||||
Sbjct 700 ACGTCAGGTTGTTGAAGAAGACGAAG 725
>seq84152
Length=5826
Score = 104 bits (114), Expect = 4e-17
Identities = 120/162 (74%), Gaps = 0/162 (0%)
Strand=Plus/Minus
Query 169242 AGCGTGGTGCGCACAGCCATCATGCCGCAGCCGATGTCGACGCCGACCGCGTACGGGATC 169301
|| ||||| || || || ||||||||||| ||||||||||| ||||||||| ||||||
Sbjct 4596 AGGGTGGTCCGGACGGCGATCATGCCGCACCCGATGTCGACCCCGACCGCGGCCGGGATG 4537
Query 169302 ACCGCATCCTTGGTCGGGATCACCGAACCAACGGCTGCGCCGTACCCGGCGTGGACGTCG 169361
|| || || |||||||| || | ||| || || | || | ||| ||| | ||
Sbjct 4536 ACGGCGTCGACCGTCGGGATGACGGTACCGACCGCGGATCCCTTGCCGTAGTGCGCATCC 4477
Query 169362 GGCATCACCGCGACGTGCTTGAACACGAACGGCAGCCCGGCG 169403
||||||| ||| |||||| | |||||| |||||| | |||
Sbjct 4476 GGCATCAACGCCACGTGCGGGTGCACGAAGGGCAGCGCTGCG 4435
>seq207634
Length=279
Score = 95.1 bits (104), Expect = 2e-14
Identities = 103/137 (75%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 113965 CGCATCAGGTCTTCGATGAAGTGTGGGTCATCGACCCACTCGTCGAACTTCTCGGCGTTG 114024
|||||| ||| ||||||||| | || || ||||| ||| || ||||| ||||
Sbjct 276 CGCATCGCGTCCTCGATGAAGCCTTTCTCGTCCTTCCACTGGTCCCACGTCTCGAGGTTG 217
Query 114025 ACGCTCGACAGGCAGCAGACCGCCGTACGCTTCTTGCCTTGATCATCGCGCCCGGTCGCC 114084
| |||||||||||||||||| || || | ||||| ||| ||||||||||||| |
Sbjct 216 AGCGACGACAGGCAGCAGACCGCGGTGCGGTCGTTGCCGAGATGGTCGCGCCCGGTCGGC 157
Query 114085 AGCGTGATCTCGGTGCA 114101
| |||||||||| ||||
Sbjct 156 AACGTGATCTCGCTGCA 140
>seq50670
Length=586
Score = 89.7 bits (98), Expect = 9e-13
Identities = 112/154 (73%), Gaps = 0/154 (0%)
Strand=Plus/Plus
Query 113554 GGGTTCTTCACGGGGAAGGAGCCCGACAGCGTCTTATGCAGATAGGCGTTGGCGCGCCAC 113613
|||||||| | | |||| ||||||||||||||| ||| ||| |||||| | |
Sbjct 376 GGGTTCTTGATCGAGAAGCTGCCCGACAGCGTCTTGTGCGTGTAGATGTTGGCCGGGATC 435
Query 113614 GGCTCGATCGACGGCGAGGTATTGCCGCAGAGGATAGACGACGACGCGTTGGGAGCGATC 113673
|||||||| ||| |||| |||||||| ||| || ||||||| | || ||||||
Sbjct 436 GGCTCGATGCACGCGCAGGTGCCGCCGCAGATGATCGAGATCGACGCGGTCGGCGCGATC 495
Query 113674 GCCATCTTGTGGGCGAAGCGCTCGCCCGTGCCGA 113707
||||||||| | ||| ||||| || |||||
Sbjct 496 GCCATCTTGCAGCTGAACCGCTCCATCGCGCCGA 529
>seq44874
Length=1860
Score = 89.7 bits (98), Expect = 9e-13
Identities = 120/165 (73%), Gaps = 8/165 (5%)
Strand=Plus/Plus
Query 172318 GCCGCGAAGGCGACGATCAGGATCGGGAAGATGAAGCGCATGCCGAACACGGCGATGATG 172377
|| |||| | ||||||||| | ||| | | | ||||||||||| |||||||||| |
Sbjct 1442 GCGGCGACGAAGACGATCAGCAGCGGCAGCAGCAGCCGCATGCCGAAGACGGCGATGACG 1501
Query 172378 ATGCCGACGCCCAGGAAGAGCTTCTTCC---ACT-TCTCGTCCCAATTCTGAAGAACGTG 172433
||||||||| ||||||| ||||| || ||| ||| ||| || || |||
Sbjct 1502 ATGCCGACGGTGAGGAAGATCTTCTGCCAGAACTCACTCATCC----GCTCCAGCACGGT 1557
Query 172434 GGCGTTGACGACGGCGTTGTCGAACGACAGCGAGATTTCCAGGAT 172478
||||||| || ||||||||||| ||||| |||| || |||||
Sbjct 1558 CGCGTTGATCACCGCGTTGTCGAAGGACAGGGAGACCTCGAGGAT 1602
>seq187851
Length=343
Score = 84.2 bits (92), Expect = 4e-11
Identities = 64/76 (84%), Gaps = 0/76 (0%)
Strand=Plus/Minus
Query 132963 GCGGGGTGGAGCAGTCCGGTAGCTCGTTTGGCTCATAACCAAAAGGTCGAGGGTTCAAAT 133022
|||||||||||||| |||||||||| | ||||||||||| | |||||| |||||||||
Sbjct 76 GCGGGGTGGAGCAGCTCGGTAGCTCGCTGGGCTCATAACCCAGAGGTCGCAGGTTCAAAT 17
Query 133023 CCCTCCCCCGCATCCA 133038
|| ||||||| |||
Sbjct 16 CCTGTCCCCGCAACCA 1
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 892663879482360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |