Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heliconius_20pachinus_20[genbank_20GCA_5F900068735.1_202017-04-26]
277,083 sequences; 279,264,790 total letters
Query= NC_019407.1
Length=218929
Score E
Sequences producing significant alignments: (Bits) Value
seq50670 127 3e-24
seq273731 116 5e-21
seq84152 114 2e-20
seq103796 104 3e-17
seq103797 86.0 9e-12
>seq50670
Length=586
Score = 127 bits (140), Expect = 3e-24
Identities = 166/230 (72%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 83166 TGCTGGATCGAACCCTCGGCCGCGACGATCGACTTCCAGACCGCCTCGGTGTCCAGGCCC 83225
||||||| |||||| | ||| |||||| |||||||| || ||| ||| | | |
Sbjct 289 TGCTGGACCGAACCGCCCTGTTCGAGGATCGAGTTCCAGACGGCATCGCTGTTCTTGGAC 348
Query 83226 AGTTCGCCCAGGCGCTTCTTCAGCCAGCGGTTCTTGACGGCGAACGAGCCCGACAGAGTC 83285
|||| ||| ||| | || | ||||||||| | ||| ||||||||| |||
Sbjct 349 TTCTCGCTCAGCATCTTTTCGAGATACGGGTTCTTGATCGAGAAGCTGCCCGACAGCGTC 408
Query 83286 TTGTGCAGGAAGGTGTTGGCCGGGATCGGCTCGATCGACGGCGAGGTGCCCCCGCAAAGG 83345
|||||| | || |||||||||||||||||||||| ||| ||||||| ||||| | |
Sbjct 409 TTGTGCGTGTAGATGTTGGCCGGGATCGGCTCGATGCACGCGCAGGTGCCGCCGCAGATG 468
Query 83346 ATCGAGGACGAGGCGTTGGGCGCCACGGCCAGCTTGTGGGCGAACCGCTC 83395
|||||| ||| ||| | ||||| | |||| |||| | |||||||||
Sbjct 469 ATCGAGATCGACGCGGTCGGCGCGATCGCCATCTTGCAGCTGAACCGCTC 518
>seq273731
Length=579
Score = 116 bits (128), Expect = 5e-21
Identities = 246/364 (68%), Gaps = 10/364 (3%)
Strand=Plus/Plus
Query 82287 CATGTACTCGTGCTTTTCGCGCATCGCCTCGTAGTCGAGGAAGGCGCGGAACTCGACCTC 82346
|||||| |||| ||| || |||| ||| ||| ||||||||||| | | ||||| ||
Sbjct 27 CATGTAGTCGTACTTGTCCTTCATCTCCTTGTATTCGAGGAAGGCCGAGTATTCGACTTC 86
Query 82347 GGGCAGGCCCAGGGTGTCGATCAG-CGTCGAGTAGGCGTCGATGTGGTTGGCCTCGGCGG 82405
||||| ||| | || |||| || | | | || || |||||||| | | |||| |
Sbjct 87 GGGCATGCCGATCGTATCGAGAAGATGGCTA-TACGCCGCGATGTGGATCGTCTCGATGT 145
Query 82406 CGATGAACGCGCCCAGCATCATCCGCACTTCCGGGTGCGGGAAGCGCGGGCCGTACTTCT 82465
| ||||||| |||||||||| ||||||| | | | ||| | ||| ||| | ||
Sbjct 146 TGGAGAACGCGGACAGCATCATCAGCACTTCGGTGGGTTTGAACACCTGGCTGTAGTGCT 205
Query 82466 CGAAGTAGCCGCGCGCCACGTCGACGTCGGCCTGGGTGAAGAACCGGAAGAGTTGCGTCA 82525
| ||||| | ||| |||||||| | ||| |||||||| ||||||| ||||| |
Sbjct 206 TCATGTAGCAGTTGTTCACCTCGACGTCCGACTGCGTGAAGAAACGGAAGATCTGCGTGA 265
Query 82526 GCAGGGACTTCTCGTTCGGCGT----CAGCTTCTCGTTCCAGTCCTGGATGTCCTGGTCC 82581
||| | || || | || |||| || || |||||||| || ||| | | |
Sbjct 266 CCAG----ATTGCGCTCCGAGTCTGACAGCGTCCGGTGCCAGTCCTTGACGTCATCGGCG 321
Query 82582 ATGGGGGCTTCGTGCGGAAGCCAGTGCATGGCCTGCATGGTCTTGTAGGCCTCATAGGCC 82641
| || | || | ||| |||||||||| ||| || | ||||||| ||||||
Sbjct 322 AGCGGCACCTCTTCCGGCAGCCAGTGCACACGTTGCTGCGTGTACCAGGCCTCGTAGGCC 381
Query 82642 CAGG 82645
||||
Sbjct 382 CAGG 385
>seq84152
Length=5826
Score = 114 bits (126), Expect = 2e-20
Identities = 242/348 (70%), Gaps = 20/348 (6%)
Strand=Plus/Minus
Query 135407 GCCCTTCACGCAGAGGACTTGCTTGAGGGTGTGGACGATGTCCACGAGGTCCTTCTGGGC 135466
|||||||||| ||| || || ||||||||| |||| ||||||| || | |
Sbjct 5477 GCCCTTCACGTTGAGCACCTGACGCAGGGTGTGGTCGATCGACACGAGGCGCTCGGCGTC 5418
Query 135467 CTCCATGACCGCGTCGATGTCCTTGTAGGCCATCGGGATTTCGTCGATC-ACGCCAGCGT 135525
|||| || |||||||| |||||| ||| |||||| ||||||||| || || ||
Sbjct 5417 GGCCATCACGACGTCGATGCTCTTGTACGCCTGCGGGATCTCGTCGATCCACTCC-GCCC 5359
Query 135526 CCTTACGGCACTCCACGCCC-TCG--GTGGCCTTGATCTGGTCCTCCAGGGTGAAG-GTC 135581
| | ||| |||| | || || | ||||| || | | |||| |||| | | |
Sbjct 5358 CGTGCCGGTACTCGATCCCGGTCATCGCGGCCTCGAGATCGGCCTC---GGTGTACCGAC 5302
Query 135582 GCCTTGGCCTGGGTCCGCGACATCGTCCGGCCCGCGCCGTGCGAGCACGAGCA--GAACG 135639
|| ||||||| || ||| || | | || ||||||||||||| ||| || || ||
Sbjct 5301 GC-TTGGCCTCGGCCCGTGAGAACCGACGCCCCGCGCCGTGCGGCGCCGAACACAGACCG 5243
Query 135640 AGTCCGCATTG-CCCTTGCCGCGCACGATGTAGGACTTGGCCCCCATCGAGCCGGGGATG 135698
|||| || ||||||||| ||||||||||||| | |||||||||||| ||||||
Sbjct 5242 ---CCGCCGTGTCCCTTGCCGGTCACGATGTAGGACCGCGTCCCCATCGAGCCCGGGATG 5186
Query 135699 AT--CCCGAACTGGTCCTTCTGCGCCGACACCGCGCCCTTGCGGGTCA 135744
|| |||| || ||| ||||| | ||| |||||||||||||
Sbjct 5185 ATGCCCCGCACAC--CCTCGTGCGCGTCGATCGCACCCTTGCGGGTCA 5140
Score = 91.5 bits (100), Expect = 2e-13
Identities = 76/93 (82%), Gaps = 0/93 (0%)
Strand=Plus/Minus
Query 136043 GTTGCCGACGCCGCGCGAGCCCGAGTGGAGCATCACCCAGACGCGCTGGTCCTCGTCGAG 136102
||||||||| || ||||| || ||||| || | || ||| || || | | |||||||||
Sbjct 4835 GTTGCCGACACCCCGCGAACCGGAGTGCAGGAACATCCACACCCGATCGGACTCGTCGAG 4776
Query 136103 GCAGACCTCGATGAAGTGGTTGCCGCCGCCCAG 136135
||| | |||||||||||||||||||||||| ||
Sbjct 4775 GCACAGCTCGATGAAGTGGTTGCCGCCGCCGAG 4743
>seq103796
Length=610
Score = 104 bits (114), Expect = 3e-17
Identities = 194/282 (69%), Gaps = 5/282 (2%)
Strand=Plus/Plus
Query 81950 TGTCCGGGGCGATCGCGAAGGCCTGATCGATGAACGCGTCTTCGAGGTCGACCATGGCGC 82009
|| ||||| | ||| ||||||| | |||||||| ||| |||||| || | | |
Sbjct 328 TGACCGGGCCCATCTCGAAGGCGAGGTCGATGAAATTGTCCTCGAGGCGGATCGTCGTCT 387
Query 82010 GGCAGGCGTCATAGATGCGCTTCTTGGTCTCGTCGTTCCAGGAGCGCGGATGCTCCTTGA 82069
||||| |||| |||| | |||| | | | | || ||| | | | ||||||
Sbjct 388 GGCAGACGTCGGCGATGTCGTCCTTGACCGCCTTGGTC-AGG--CACTGGCGCTCCTGAC 444
Query 82070 TCAACTCGTGCAGGAGCTTGATCATCGACTCCACGTGATGGCTCTCGTCGCGGATCGACC 82129
|| ||| | | |||||| || ||| ||| |||||||||||||||||||||
Sbjct 445 AGAAGGTGTGGAACATCTTGATGATGCCCTCGCAGTGCAGGCTCTCGTCGCGGATCGACC 504
Query 82130 ACTCGACGATCGTGGTCATGCCCTTCATGCGGTTGCGGCGCTGGAAGGACATCAGCAGGG 82189
| ||||||| | |||||||||||| |||| |||| ||||| |||||||| |
Sbjct 505 AGGTGACGATCTGGCCCATGCCCTTCATCTTGTTGAAGCGCGGGAAGTTCATCAGCATCG 564
Query 82190 CGAAGGACGAGAAAAGCTGCATCCCCTCGCCGAAG--GCCGA 82229
|||| |||| ||| ||||| | |||||| |||| |||||
Sbjct 565 CGAACGACGCGAACAGCTGGACGCCCTCGGTGAAGCCGCCGA 606
Score = 86.0 bits (94), Expect = 9e-12
Identities = 125/174 (72%), Gaps = 2/174 (1%)
Strand=Plus/Plus
Query 81703 TACTCCGTCGAGCGCTGCTCGAAGAAGTTGGTGTGGGTCGGGGC-GTTCATGATCCAGTC 81761
|| || |||| |||||| ||||||||||||| ||| ||| || ||||| ||| |
Sbjct 153 TATTCGGTCGCGCGCTGTTCGAAGAAGTTGGCGTGC-TCGACGCCGTTCAGCATCGGCGC 211
Query 81762 GAGCCAGTCGAACGGATTGTCCTTGACGCCGTAGTTGGGCTTCAGGCCCAGTTGCAGCAG 81821
|||||| | ||| | || | || |||| | ||||||||||| || || ||
Sbjct 212 GAGCCACGGCAGCGGGTGCTCGTCGATCATGTAGATCGGCTTCAGGCCGAGCTGGGTCAT 271
Query 81822 TCGGCGGTCGGCGATGTAGCGGATGTACTGCTTGGTGTCCTCGGGCGTGACGCC 81875
|| | |||||||||| |||||||||||| |||| | |||| ||| || | |||
Sbjct 272 GCGCCAGTCGGCGATGAAGCGGATGTACTTCTTGATCTCCTTGGGGGTCATGCC 325
>seq103797
Length=816
Score = 86.0 bits (94), Expect = 9e-12
Identities = 104/142 (73%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 82287 CATGTACTCGTGCTTTTCGCGCATCGCCTCGTAGTCGAGGAAGGCGCGGAACTCGACCTC 82346
|||||| || |||||||| |||| | | || ||||||||||||| | ||||| |||
Sbjct 426 CATGTAATCATGCTTTTCCTTCATCTCGGCATATTCGAGGAAGGCGCCGTACTCGCTCTC 485
Query 82347 GGGCAGGCCCAGGGTGTCGATCAGCGTCGAGTAGGCGTCGATGTGGTTGGCCTCGGCGGC 82406
||||| ||| | |||||||| ||| ||||||| |||||||| | ||| |
Sbjct 486 GGGCATGCCGATGGTGTCGAGCAGATGGCTGTAGGCGGCGATGTGGACCGTCTCCATGTT 545
Query 82407 GATGAACGCGCCCAGCATCATC 82428
| |||||| | ||||||||||
Sbjct 546 GCTGAACGAGGTCAGCATCATC 567
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 698018783168520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |