Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20pachinus_20[genbank_20GCA_5F900068735.1_202017-04-26] 277,083 sequences; 279,264,790 total letters Query= NC_019407.1 Length=218929 Score E Sequences producing significant alignments: (Bits) Value seq50670 127 3e-24 seq273731 116 5e-21 seq84152 114 2e-20 seq103796 104 3e-17 seq103797 86.0 9e-12 >seq50670 Length=586 Score = 127 bits (140), Expect = 3e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 83166 TGCTGGATCGAACCCTCGGCCGCGACGATCGACTTCCAGACCGCCTCGGTGTCCAGGCCC 83225 ||||||| |||||| | ||| |||||| |||||||| || ||| ||| | | | Sbjct 289 TGCTGGACCGAACCGCCCTGTTCGAGGATCGAGTTCCAGACGGCATCGCTGTTCTTGGAC 348 Query 83226 AGTTCGCCCAGGCGCTTCTTCAGCCAGCGGTTCTTGACGGCGAACGAGCCCGACAGAGTC 83285 |||| ||| ||| | || | ||||||||| | ||| ||||||||| ||| Sbjct 349 TTCTCGCTCAGCATCTTTTCGAGATACGGGTTCTTGATCGAGAAGCTGCCCGACAGCGTC 408 Query 83286 TTGTGCAGGAAGGTGTTGGCCGGGATCGGCTCGATCGACGGCGAGGTGCCCCCGCAAAGG 83345 |||||| | || |||||||||||||||||||||| ||| ||||||| ||||| | | Sbjct 409 TTGTGCGTGTAGATGTTGGCCGGGATCGGCTCGATGCACGCGCAGGTGCCGCCGCAGATG 468 Query 83346 ATCGAGGACGAGGCGTTGGGCGCCACGGCCAGCTTGTGGGCGAACCGCTC 83395 |||||| ||| ||| | ||||| | |||| |||| | ||||||||| Sbjct 469 ATCGAGATCGACGCGGTCGGCGCGATCGCCATCTTGCAGCTGAACCGCTC 518 >seq273731 Length=579 Score = 116 bits (128), Expect = 5e-21 Identities = 246/364 (68%), Gaps = 10/364 (3%) Strand=Plus/Plus Query 82287 CATGTACTCGTGCTTTTCGCGCATCGCCTCGTAGTCGAGGAAGGCGCGGAACTCGACCTC 82346 |||||| |||| ||| || |||| ||| ||| ||||||||||| | | ||||| || Sbjct 27 CATGTAGTCGTACTTGTCCTTCATCTCCTTGTATTCGAGGAAGGCCGAGTATTCGACTTC 86 Query 82347 GGGCAGGCCCAGGGTGTCGATCAG-CGTCGAGTAGGCGTCGATGTGGTTGGCCTCGGCGG 82405 ||||| ||| | || |||| || | | | || || |||||||| | | |||| | Sbjct 87 GGGCATGCCGATCGTATCGAGAAGATGGCTA-TACGCCGCGATGTGGATCGTCTCGATGT 145 Query 82406 CGATGAACGCGCCCAGCATCATCCGCACTTCCGGGTGCGGGAAGCGCGGGCCGTACTTCT 82465 | ||||||| |||||||||| ||||||| | | | ||| | ||| ||| | || Sbjct 146 TGGAGAACGCGGACAGCATCATCAGCACTTCGGTGGGTTTGAACACCTGGCTGTAGTGCT 205 Query 82466 CGAAGTAGCCGCGCGCCACGTCGACGTCGGCCTGGGTGAAGAACCGGAAGAGTTGCGTCA 82525 | ||||| | ||| |||||||| | ||| |||||||| ||||||| ||||| | Sbjct 206 TCATGTAGCAGTTGTTCACCTCGACGTCCGACTGCGTGAAGAAACGGAAGATCTGCGTGA 265 Query 82526 GCAGGGACTTCTCGTTCGGCGT----CAGCTTCTCGTTCCAGTCCTGGATGTCCTGGTCC 82581 ||| | || || | || |||| || || |||||||| || ||| | | | Sbjct 266 CCAG----ATTGCGCTCCGAGTCTGACAGCGTCCGGTGCCAGTCCTTGACGTCATCGGCG 321 Query 82582 ATGGGGGCTTCGTGCGGAAGCCAGTGCATGGCCTGCATGGTCTTGTAGGCCTCATAGGCC 82641 | || | || | ||| |||||||||| ||| || | ||||||| |||||| Sbjct 322 AGCGGCACCTCTTCCGGCAGCCAGTGCACACGTTGCTGCGTGTACCAGGCCTCGTAGGCC 381 Query 82642 CAGG 82645 |||| Sbjct 382 CAGG 385 >seq84152 Length=5826 Score = 114 bits (126), Expect = 2e-20 Identities = 242/348 (70%), Gaps = 20/348 (6%) Strand=Plus/Minus Query 135407 GCCCTTCACGCAGAGGACTTGCTTGAGGGTGTGGACGATGTCCACGAGGTCCTTCTGGGC 135466 |||||||||| ||| || || ||||||||| |||| ||||||| || | | Sbjct 5477 GCCCTTCACGTTGAGCACCTGACGCAGGGTGTGGTCGATCGACACGAGGCGCTCGGCGTC 5418 Query 135467 CTCCATGACCGCGTCGATGTCCTTGTAGGCCATCGGGATTTCGTCGATC-ACGCCAGCGT 135525 |||| || |||||||| |||||| ||| |||||| ||||||||| || || || Sbjct 5417 GGCCATCACGACGTCGATGCTCTTGTACGCCTGCGGGATCTCGTCGATCCACTCC-GCCC 5359 Query 135526 CCTTACGGCACTCCACGCCC-TCG--GTGGCCTTGATCTGGTCCTCCAGGGTGAAG-GTC 135581 | | ||| |||| | || || | ||||| || | | |||| |||| | | | Sbjct 5358 CGTGCCGGTACTCGATCCCGGTCATCGCGGCCTCGAGATCGGCCTC---GGTGTACCGAC 5302 Query 135582 GCCTTGGCCTGGGTCCGCGACATCGTCCGGCCCGCGCCGTGCGAGCACGAGCA--GAACG 135639 || ||||||| || ||| || | | || ||||||||||||| ||| || || || Sbjct 5301 GC-TTGGCCTCGGCCCGTGAGAACCGACGCCCCGCGCCGTGCGGCGCCGAACACAGACCG 5243 Query 135640 AGTCCGCATTG-CCCTTGCCGCGCACGATGTAGGACTTGGCCCCCATCGAGCCGGGGATG 135698 |||| || ||||||||| ||||||||||||| | |||||||||||| |||||| Sbjct 5242 ---CCGCCGTGTCCCTTGCCGGTCACGATGTAGGACCGCGTCCCCATCGAGCCCGGGATG 5186 Query 135699 AT--CCCGAACTGGTCCTTCTGCGCCGACACCGCGCCCTTGCGGGTCA 135744 || |||| || ||| ||||| | ||| ||||||||||||| Sbjct 5185 ATGCCCCGCACAC--CCTCGTGCGCGTCGATCGCACCCTTGCGGGTCA 5140 Score = 91.5 bits (100), Expect = 2e-13 Identities = 76/93 (82%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 136043 GTTGCCGACGCCGCGCGAGCCCGAGTGGAGCATCACCCAGACGCGCTGGTCCTCGTCGAG 136102 ||||||||| || ||||| || ||||| || | || ||| || || | | ||||||||| Sbjct 4835 GTTGCCGACACCCCGCGAACCGGAGTGCAGGAACATCCACACCCGATCGGACTCGTCGAG 4776 Query 136103 GCAGACCTCGATGAAGTGGTTGCCGCCGCCCAG 136135 ||| | |||||||||||||||||||||||| || Sbjct 4775 GCACAGCTCGATGAAGTGGTTGCCGCCGCCGAG 4743 >seq103796 Length=610 Score = 104 bits (114), Expect = 3e-17 Identities = 194/282 (69%), Gaps = 5/282 (2%) Strand=Plus/Plus Query 81950 TGTCCGGGGCGATCGCGAAGGCCTGATCGATGAACGCGTCTTCGAGGTCGACCATGGCGC 82009 || ||||| | ||| ||||||| | |||||||| ||| |||||| || | | | Sbjct 328 TGACCGGGCCCATCTCGAAGGCGAGGTCGATGAAATTGTCCTCGAGGCGGATCGTCGTCT 387 Query 82010 GGCAGGCGTCATAGATGCGCTTCTTGGTCTCGTCGTTCCAGGAGCGCGGATGCTCCTTGA 82069 ||||| |||| |||| | |||| | | | | || ||| | | | |||||| Sbjct 388 GGCAGACGTCGGCGATGTCGTCCTTGACCGCCTTGGTC-AGG--CACTGGCGCTCCTGAC 444 Query 82070 TCAACTCGTGCAGGAGCTTGATCATCGACTCCACGTGATGGCTCTCGTCGCGGATCGACC 82129 || ||| | | |||||| || ||| ||| ||||||||||||||||||||| Sbjct 445 AGAAGGTGTGGAACATCTTGATGATGCCCTCGCAGTGCAGGCTCTCGTCGCGGATCGACC 504 Query 82130 ACTCGACGATCGTGGTCATGCCCTTCATGCGGTTGCGGCGCTGGAAGGACATCAGCAGGG 82189 | ||||||| | |||||||||||| |||| |||| ||||| |||||||| | Sbjct 505 AGGTGACGATCTGGCCCATGCCCTTCATCTTGTTGAAGCGCGGGAAGTTCATCAGCATCG 564 Query 82190 CGAAGGACGAGAAAAGCTGCATCCCCTCGCCGAAG--GCCGA 82229 |||| |||| ||| ||||| | |||||| |||| ||||| Sbjct 565 CGAACGACGCGAACAGCTGGACGCCCTCGGTGAAGCCGCCGA 606 Score = 86.0 bits (94), Expect = 9e-12 Identities = 125/174 (72%), Gaps = 2/174 (1%) Strand=Plus/Plus Query 81703 TACTCCGTCGAGCGCTGCTCGAAGAAGTTGGTGTGGGTCGGGGC-GTTCATGATCCAGTC 81761 || || |||| |||||| ||||||||||||| ||| ||| || ||||| ||| | Sbjct 153 TATTCGGTCGCGCGCTGTTCGAAGAAGTTGGCGTGC-TCGACGCCGTTCAGCATCGGCGC 211 Query 81762 GAGCCAGTCGAACGGATTGTCCTTGACGCCGTAGTTGGGCTTCAGGCCCAGTTGCAGCAG 81821 |||||| | ||| | || | || |||| | ||||||||||| || || || Sbjct 212 GAGCCACGGCAGCGGGTGCTCGTCGATCATGTAGATCGGCTTCAGGCCGAGCTGGGTCAT 271 Query 81822 TCGGCGGTCGGCGATGTAGCGGATGTACTGCTTGGTGTCCTCGGGCGTGACGCC 81875 || | |||||||||| |||||||||||| |||| | |||| ||| || | ||| Sbjct 272 GCGCCAGTCGGCGATGAAGCGGATGTACTTCTTGATCTCCTTGGGGGTCATGCC 325 >seq103797 Length=816 Score = 86.0 bits (94), Expect = 9e-12 Identities = 104/142 (73%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 82287 CATGTACTCGTGCTTTTCGCGCATCGCCTCGTAGTCGAGGAAGGCGCGGAACTCGACCTC 82346 |||||| || |||||||| |||| | | || ||||||||||||| | ||||| ||| Sbjct 426 CATGTAATCATGCTTTTCCTTCATCTCGGCATATTCGAGGAAGGCGCCGTACTCGCTCTC 485 Query 82347 GGGCAGGCCCAGGGTGTCGATCAGCGTCGAGTAGGCGTCGATGTGGTTGGCCTCGGCGGC 82406 ||||| ||| | |||||||| ||| ||||||| |||||||| | ||| | Sbjct 486 GGGCATGCCGATGGTGTCGAGCAGATGGCTGTAGGCGGCGATGTGGACCGTCTCCATGTT 545 Query 82407 GATGAACGCGCCCAGCATCATC 82428 | |||||| | |||||||||| Sbjct 546 GCTGAACGAGGTCAGCATCATC 567 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 698018783168520