Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20pachinus_20[genbank_20GCA_5F900068735.1_202017-04-26] 277,083 sequences; 279,264,790 total letters Query= NC_019411.1 Length=219216 Score E Sequences producing significant alignments: (Bits) Value seq50670 123 3e-23 seq273731 105 9e-18 seq103796 104 3e-17 seq84152 91.5 2e-13 >seq50670 Length=586 Score = 123 bits (136), Expect = 3e-23 Identities = 152/208 (73%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 83754 CGACGATCGACTTCCAGACCGCCTCGGTGTCCAGGCCCAGTTCGCCCAGGCGCTTCTTCA 83813 ||| |||||| |||||||| || ||| ||| | | | |||| ||| ||| | | Sbjct 311 CGAGGATCGAGTTCCAGACGGCATCGCTGTTCTTGGACTTCTCGCTCAGCATCTTTTCGA 370 Query 83814 GCCAGCGGTTCTTGACGGCGAACGAGCCCGACAGGGTCTTGTGCAGGAAGGTGTTGGCCG 83873 | | ||||||||| | ||| ||||||||| ||||||||| | || ||||||||| Sbjct 371 GATACGGGTTCTTGATCGAGAAGCTGCCCGACAGCGTCTTGTGCGTGTAGATGTTGGCCG 430 Query 83874 GGATCGGCTCGATCGACGGCGAGGTGCCCCCGCAAAGGATCGAGGACGAGGCGTTGGGCG 83933 ||||||||||||| ||| ||||||| ||||| | ||||||| ||| ||| | |||| Sbjct 431 GGATCGGCTCGATGCACGCGCAGGTGCCGCCGCAGATGATCGAGATCGACGCGGTCGGCG 490 Query 83934 CCACGGCCAGCTTGTGGGCGAACCGCTC 83961 | | |||| |||| | ||||||||| Sbjct 491 CGATCGCCATCTTGCAGCTGAACCGCTC 518 >seq273731 Length=579 Score = 105 bits (116), Expect = 9e-18 Identities = 223/327 (68%), Gaps = 8/327 (2%) Strand=Plus/Plus Query 82853 CATGTACTCGTGCTTCTCGCGCATCGCCTCGTAGTCGAGGAAGGCGCGGAACTCGACCTC 82912 |||||| |||| ||| || |||| ||| ||| ||||||||||| | | ||||| || Sbjct 27 CATGTAGTCGTACTTGTCCTTCATCTCCTTGTATTCGAGGAAGGCCGAGTATTCGACTTC 86 Query 82913 GGGCAGGCCCAGGGTGTCGATCAG-CGTCGAGTAGGCGTCGATATGGTTGGCCTCGGCGG 82971 ||||| ||| | || |||| || | | | || || |||| ||| | | |||| | Sbjct 87 GGGCATGCCGATCGTATCGAGAAGATGGCTA-TACGCCGCGATGTGGATCGTCTCGATGT 145 Query 82972 CGATGAACGCGCCCAGCATCATCCGCACTTCCGGGTGCGGGAAGCGCGGGCCGTACTTCT 83031 | ||||||| |||||||||| ||||||| | | | ||| | ||| ||| | || Sbjct 146 TGGAGAACGCGGACAGCATCATCAGCACTTCGGTGGGTTTGAACACCTGGCTGTAGTGCT 205 Query 83032 CGAAGTAGCCGCGCGCCACGTCGACGTCGGCCTGGGTGAAGAACCGGAAGAGTTGCGTCA 83091 | ||||| | ||| |||||||| | ||| |||||||| ||||||| ||||| | Sbjct 206 TCATGTAGCAGTTGTTCACCTCGACGTCCGACTGCGTGAAGAAACGGAAGATCTGCGTGA 265 Query 83092 GCAGGGACTTCTCGTCCG---GCGTCAGCTTCTCGTTCCAGTCCTGGATGTCCTGGTCCA 83148 || || | | | |||| | |||| || || |||||||| || ||| | | | | Sbjct 266 CCA--GATTGCGC-TCCGAGTCTGACAGCGTCCGGTGCCAGTCCTTGACGTCATCGGCGA 322 Query 83149 TGGGGGCTTCGTGCGGAAGCCAGTGCA 83175 || | || | ||| |||||||||| Sbjct 323 GCGGCACCTCTTCCGGCAGCCAGTGCA 349 >seq103796 Length=610 Score = 104 bits (114), Expect = 3e-17 Identities = 185/268 (69%), Gaps = 3/268 (1%) Strand=Plus/Plus Query 82516 TGTCCGGGGCGATCGCGAAGGCCTGATCGATGAACGCATCTTCGAGGTCGACCATGGCGC 82575 || ||||| | ||| ||||||| | |||||||| || |||||| || | | | Sbjct 328 TGACCGGGCCCATCTCGAAGGCGAGGTCGATGAAATTGTCCTCGAGGCGGATCGTCGTCT 387 Query 82576 GGCAGGCGTCGTAGATGCGCTTCTTGGTCTCGTCGTTCCAGGCGCGCGGGTGCTCCTTGA 82635 ||||| ||||| |||| | |||| | | | | || |||| | || |||||| Sbjct 388 GGCAGACGTCGGCGATGTCGTCCTTGACCGCCTTGGTC-AGGCACT--GGCGCTCCTGAC 444 Query 82636 TCAACTCGTGCAGGAGCTTGATCATCGACTCCACGTGGTGGCTCTCGTCGCGGATCGACC 82695 || ||| | | |||||| || ||| ||| ||||||||||||||||||||| Sbjct 445 AGAAGGTGTGGAACATCTTGATGATGCCCTCGCAGTGCAGGCTCTCGTCGCGGATCGACC 504 Query 82696 ACTCGACGATCGTGGTCATGCCCTTCATGCGGTTGCGGCGCTGGAAGGACATCAGCAGGG 82755 | ||||||| | |||||||||||| |||| |||| ||||| |||||||| | Sbjct 505 AGGTGACGATCTGGCCCATGCCCTTCATCTTGTTGAAGCGCGGGAAGTTCATCAGCATCG 564 Query 82756 CGAAGGACGAGAAAAGCTGCATCCCCTC 82783 |||| |||| ||| ||||| | ||||| Sbjct 565 CGAACGACGCGAACAGCTGGACGCCCTC 592 Score = 86.0 bits (94), Expect = 9e-12 Identities = 125/174 (72%), Gaps = 2/174 (1%) Strand=Plus/Plus Query 82269 TACTCCGTCGAGCGCTGCTCGAAGAAGTTGGTGTGGGTCGGGGC-GTTCATGATCCAGTC 82327 || || |||| |||||| ||||||||||||| ||| ||| || ||||| ||| | Sbjct 153 TATTCGGTCGCGCGCTGTTCGAAGAAGTTGGCGTGC-TCGACGCCGTTCAGCATCGGCGC 211 Query 82328 GAGCCAGTCGAACGGATTGTCCTTGACGCCGTAGTTGGGCTTCAGGCCCAGTTGCAGCAG 82387 |||||| | ||| | || | || |||| | ||||||||||| || || || Sbjct 212 GAGCCACGGCAGCGGGTGCTCGTCGATCATGTAGATCGGCTTCAGGCCGAGCTGGGTCAT 271 Query 82388 CCGGCGGTCGGCGATGTAGCGGATGTACTGCTTGGTGTCCTCGGGCGTGACGCC 82441 || | |||||||||| |||||||||||| |||| | |||| ||| || | ||| Sbjct 272 GCGCCAGTCGGCGATGAAGCGGATGTACTTCTTGATCTCCTTGGGGGTCATGCC 325 >seq84152 Length=5826 Score = 91.5 bits (100), Expect = 2e-13 Identities = 76/93 (82%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 136606 GTTGCCGACGCCGCGCGAGCCCGAGTGGAGCATCACCCAGACGCGCTGGTCCTCGTCGAG 136665 ||||||||| || ||||| || ||||| || | || ||| || || | | ||||||||| Sbjct 4835 GTTGCCGACACCCCGCGAACCGGAGTGCAGGAACATCCACACCCGATCGGACTCGTCGAG 4776 Query 136666 GCAGACCTCGATGAAGTGGTTGCCGCCGCCCAG 136698 ||| | |||||||||||||||||||||||| || Sbjct 4775 GCACAGCTCGATGAAGTGGTTGCCGCCGCCGAG 4743 Score = 84.2 bits (92), Expect = 3e-11 Identities = 120/165 (73%), Gaps = 8/165 (5%) Strand=Plus/Minus Query 136147 CTTGGCCTGGGTCCGCGACATCGTCCGGCCCGCGCCGTGCGAGCACGAGCA--GAACGAG 136204 |||||||| || ||| || | | || ||||||||||||| ||| || || || Sbjct 5300 CTTGGCCTCGGCCCGTGAGAACCGACGCCCCGCGCCGTGCGGCGCCGAACACAGACCGCC 5241 Query 136205 TCCGCGTTGCCCTTGCCGCGCACGATGTAGGACTTGGCCCCCATCGAGCCGGGGATGAT- 136263 ||| || ||||||||| ||||||||||||| | |||||||||||| |||||||| Sbjct 5240 GCCGTGT--CCCTTGCCGGTCACGATGTAGGACCGCGTCCCCATCGAGCCCGGGATGATG 5183 Query 136264 -CCCGAACTGGTCCTTCTGCGCCGACACCGCGCCCTTGCGGGTCA 136307 |||| || ||| ||||| | ||| ||||||||||||| Sbjct 5182 CCCCGCACAC--CCTCGTGCGCGTCGATCGCACCCTTGCGGGTCA 5140 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 698934002255680