Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20pachinus_20[genbank_20GCA_5F900068735.1_202017-04-26] 277,083 sequences; 279,264,790 total letters Query= NC_019414.1 Length=51071 Score E Sequences producing significant alignments: (Bits) Value seq42003 273 7e-69 seq4597 129 2e-25 >seq42003 Length=910 Score = 273 bits (302), Expect = 7e-69 Identities = 421/587 (72%), Gaps = 19/587 (3%) Strand=Plus/Plus Query 39259 TCACGGGGCCACCCGGCC--CTGCTTGTTGAAGGCGGTGTACGTGATGGGCATCAGGTCC 39316 ||| ||||| || ||||| | || || |||||| | || |||| ||||| ||| | Sbjct 122 TCAGGGGGCGACGCGGCCGCCGGCCTG--GAAGGCCGCGTGGGTGAGCGGCATGAGGGGC 179 Query 39317 -GCGAGGTGGTCCTCCATCTTCTCGGCGACCATCTCGATCTCGCGCTGCGGGAAGGAGGG 39375 || | | ||||||||| ||||||| ||||||||||||||||||||||||| ||||| Sbjct 180 TGCCAAAGCG-CCTCCATCTGCTCGGCGGCCATCTCGATCTCGCGCTGCGGGAAAGAGGG 238 Query 39376 GAACTGAGCGA--TGGCACTGATGGTGCGGAGTCCGAGGAAGTGCATCAGGCTGCGCGCG 39433 ||| || | | | | || | ||||| || |||||||| ||| || ||||||| Sbjct 239 GAAGTGCGAGTCCTCGTGCT--TCGTGCGCAGCGAGAGGAAGTTCATGAGCGAGCGCGCG 296 Query 39434 TTGCAGGTGGCGTAGAAGCTGGTGAAGATCCCGACCGGGAGGACCATGCGGGCCACCTCG 39493 || ||| |||| | || | ||||| ||||| || || |||||| |||||| Sbjct 297 TTCACGGTCACGTACATCGAGGAGTAGATCGACACCGGCAGCACGGCGCGGGCGACCTCG 356 Query 39494 CGGGCGATGCCGATCTCCAGCATCACCTCGTAGGAGCGGTACGCCT-GCTCGT-ACGCGT 39551 ||||| | ||| || ||||| | |||| ||| |||| ||||| ||||| Sbjct 357 CGGGCCACACCGGCGTCGAGCATGCGCAGGTAGCTCGCGTAGGCCTCGCTCGCGACGCGG 416 Query 39552 CA-CTCATGGCGGAGAGCGTCACCGCGTACTGCGAGGGCGAGCCGGGCGTGAACTGGTAG 39610 | ||| |||| || || | ||| |||| ||| | ||| ||| |||| Sbjct 417 CGGCTCTCGGCGACGA-CG--AGTTCGTGCTGCTCGGGGGTGCCCTCTTCGAAGACGTAG 473 Query 39611 GCGCCGGGCTTGCCCTTCTGCACCAGGTTCCGCTCATGGCCGGGGGCGTAGAAGACGGGG 39670 |||||||||||||| |||||| || ||||| ||||||| ||||||||||||| Sbjct 474 GCGCCGGGCTTGCCGACCTGCACGAGACGGCGCTCGGGGCCGGGCACGTAGAAGACGGGA 533 Query 39671 CGGAGCTGCTTGTAGCGGCCCGACTCCTCGTTGTACGACCAGCCCGAGCGGTGGCGGAAG 39730 || ||||| |||||| || |||||||||||| || | | |||||| || | | Sbjct 534 CGCAGCTGACGGTAGCGCCCGCTCTCCTCGTTGTAGGA---GGCGATGCGGTGCCGCATG 590 Query 39731 AACTCGCGGGCCACGAAGACCGGCGCCTCGACGTAGAAGGTGAACGTGGTGTGCTCGAAG 39790 ||||||||| ||||||| |||||||| ||||||||||||| || | ||||||||||| Sbjct 591 AACTCGCGGAAGACGAAGATCGGCGCCTGCACGTAGAAGGTGAGCGAGTTGTGCTCGAAG 650 Query 39791 GGGCTGCCGTGCCGGTCCCGCATCAGGTAGTTGATCAGGCCCTGGTC 39837 || |||||| ||||| ||||||||||||||||| ||||||| ||| Sbjct 651 GGCGAGCCGTGGCGGTCGCGCATCAGGTAGTTGATGAGGCCCTTGTC 697 >seq4597 Length=157418 Score = 129 bits (142), Expect = 2e-25 Identities = 140/186 (75%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 34182 CACCTGACCCCGGTCGAGGCGATGGAGATCGACCACGCCATCGCGGAGTGCGTGGTGTCG 34241 ||||||||| ||||||| ||| |||||||||||| |||||||| | ||| || | Sbjct 124606 CACCTGACCGGCATCGAGGCCATGCAGATCGACCACGACATCGCGGCATCCGTCGTCGCA 124547 Query 34242 GGCGGTGTCCGGCGCTCTGCCCGTATGGCCATCTGCAAGTGGGACGACCCGTTCATCGAC 34301 || |||| || || || || |||||||| || |||||||||||| || | Sbjct 124546 GGTGGTGCACGTCGGTCCGCGCGTATGGCAATGATGGTCTGGGACGACCCGGAAGTCTTC 124487 Query 34302 GACTTCCTCGACTGCAAGGCGGACGGCTCGAAGCACTGGACGACGAACATCTCCGTCGAG 34361 |||||| || |||||||||| ||| | || | |||||||| |||||||||||||||||| Sbjct 124486 GACTTCATCAACTGCAAGGCCGACTGGTCCACTCACTGGACCACGAACATCTCCGTCGAG 124427 Query 34362 ATCGAC 34367 | ||| Sbjct 124426 GTAGAC 124421 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 162768265683918