Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20pachinus_20[genbank_20GCA_5F900068735.1_202017-04-26] 277,083 sequences; 279,264,790 total letters Query= NC_019929.1 Length=243050 Score E Sequences producing significant alignments: (Bits) Value seq76033 109 9e-19 seq256480 96.9 5e-15 seq243462 91.5 2e-13 seq45463 91.5 2e-13 seq263246 87.8 3e-12 seq61277 86.0 1e-11 seq270463 84.2 3e-11 >seq76033 Length=7108 Score = 109 bits (120), Expect = 9e-19 Identities = 141/191 (74%), Gaps = 4/191 (2%) Strand=Plus/Plus Query 123074 TCCTGTCAGCTGTATCAGCGCAGTGCTGACATGTTCCTAGGCGTACCGTTTAACATTGCC 123133 ||||| ||||| |||||||||||||| ||| ||||||| || || ||||| ||||| || Sbjct 6370 TCCTGCCAGCTCTATCAGCGCAGTGCCGACCTGTTCCTCGGTGTGCCGTTCAACATCGCG 6429 Query 123134 TCTTACGCGCTCCTGATACACATGTTTGCCCAGCAGGCCAATATGGCAGTAGGTGACTTC 123193 || || || || || | |||||| | ||| ||||||| | | || ||||| ||| Sbjct 6430 TCCTATGCCCTGCTCACCCACATGATGGCCGCGCAGGCCGGCCTCGAGGTCGGTGAGTTC 6489 Query 123194 GTGTGGACGGGTGGGGATGTGCATCTGTACTCCAACCACCTGGAGCAGG-CAGATTTGCA 123252 |||||||| || ||||| || | ||| ||||||| | || |||| ||| ||||| Sbjct 6490 GTGTGGACCGGCGGGGACTGCCACATCTACGACAACCACGTCGACCAGGTGAGA-TTGCA 6548 Query 123253 GTTAACTCGCG 123263 | | |||||| Sbjct 6549 GCT--CTCGCG 6557 >seq256480 Length=539 Score = 96.9 bits (106), Expect = 5e-15 Identities = 110/148 (74%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 122519 CGCTCCATCATCCATGAGCTTCTGTGGTTCCTCATGGGCGATACCAACATCCAGTATCTG 122578 ||||| |||||| || || ||||||||||| ||||| ||||| ||| | ||| Sbjct 183 CGCTCGATCATCGTCGAACTGCTGTGGTTCCTGCGCGGCGACACCAATGTCCGCTGGCTG 124 Query 122579 AAAGACAACAACGTCAGTATCTGGGATGAATGGGCAGATGAAGATGGTAATCTCGGCCCG 122638 | || ||| ||| |||||||| |||||||| || || | || ||||||||||| Sbjct 123 CAGGAGCGCAAGGTCGCGATCTGGGACGAATGGGCGGACGAGGCGGGCGATCTCGGCCCG 64 Query 122639 GTGTACGGTAAGCAATGGCGTGAGTGGC 122666 || ||||| ||||||||||| || |||| Sbjct 63 GTCTACGGCAAGCAATGGCGCGACTGGC 36 >seq243462 Length=264 Score = 91.5 bits (100), Expect = 2e-13 Identities = 151/214 (71%), Gaps = 3/214 (1%) Strand=Plus/Minus Query 122405 GGGCACGAAAAAG-CAGACCGTACGGGCACGGGCACCCTGTCGTTATTCGGCGCACAA-A 122462 ||| ||| | ||| | || || || || || |||||| | | ||||| |||| | | Sbjct 214 GGGGACGGACAAGTCCGATCGCACCGGTACCGGCACCAGGAGCGTGTTCGG-GCACCAGA 156 Query 122463 TGCGCTTTGACCTGCAAAAAGGTTTCCCGCTGGTCACGACCAAAAAGGTTCACCTCCGCT 122522 |||| || |||||| | || |||||||||||||| || || ||||| ||||| || | Sbjct 155 TGCGGTTCGACCTGTCGGAGGGGTTCCCGCTGGTCACCACGAAGAAGGTGCACCTGCGGT 96 Query 122523 CCATCATCCATGAGCTTCTGTGGTTCCTCATGGGCGATACCAACATCCAGTATCTGAAAG 122582 | | ||| ||||| ||||||||||| ||||| |||||| ||| | ||| | | Sbjct 95 CGGTGATCGTCGAGCTGCTGTGGTTCCTGCGCGGCGAGACCAACGTCCGCTGGCTGCAGG 36 Query 122583 ACAACAACGTCAGTATCTGGGATGAATGGGCAGA 122616 | | ||| | |||||||| |||||||| || Sbjct 35 AGCGCGGCGTGACGATCTGGGACGAATGGGCGGA 2 >seq45463 Length=2920 Score = 91.5 bits (100), Expect = 2e-13 Identities = 60/65 (92%), Gaps = 1/65 (2%) Strand=Plus/Minus Query 169732 TGTAGCTCAGTTGGTCTAGAGTGCCGCCCTGTCACGGCGGAGGTCGCGGGTTCGAGCCCC 169791 |||||| |||||||| ||| ||||||||||||||||||||||||||||||||| || ||| Sbjct 2511 TGTAGCGCAGTTGGT-TAGCGTGCCGCCCTGTCACGGCGGAGGTCGCGGGTTCAAGTCCC 2453 Query 169792 GTCAG 169796 ||||| Sbjct 2452 GTCAG 2448 >seq263246 Length=351 Score = 87.8 bits (96), Expect = 3e-12 Identities = 110/151 (73%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 122420 GACCGTACGGGCACGGGCACCCTGTCGTTATTCGGCGCACAAATGCGCTTTGACCTGCAA 122479 ||||| || ||||| ||||| || | |||||||| || ||||| || || || Sbjct 185 GACCGCACAGGCACCGGCACGCTCAGCGTGTTCGGCGCGCAGATGCGGTTCGATCTCGCG 244 Query 122480 AAAGGTTTCCCGCTGGTCACGACCAAAAAGGTTCACCTCCGCTCCATCATCCATGAGCTT 122539 | || ||||| || |||| ||||| ||| | ||||||||||| |||||| || || Sbjct 245 CAGGGCTTCCCCGTGCTCACCACCAAGAAGCTCCACCTCCGCTCGATCATCATCGAACTG 304 Query 122540 CTGTGGTTCCTCATGGGCGATACCAACATCC 122570 ||||||||||| ||||| |||||| ||| Sbjct 305 CTGTGGTTCCTGCGCGGCGACACCAACGTCC 335 >seq61277 Length=456 Score = 86.0 bits (94), Expect = 1e-11 Identities = 121/170 (71%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 123074 TCCTGTCAGCTGTATCAGCGCAGTGCTGACATGTTCCTAGGCGTACCGTTTAACATTGCC 123133 || || |||||||| || ||| || ||| | ||||| || || ||||| ||||| || Sbjct 271 TCGTGCCAGCTGTACCAACGCTCGGCGGACGTCTTCCTCGGGGTGCCGTTCAACATCGCG 330 Query 123134 TCTTACGCGCTCCTGATACACATGTTTGCCCAGCAGGCCAATATGGCAGTAGGTGACTTC 123193 || ||||| || ||| | ||| || | |||||| || | | || | || |||||| Sbjct 331 TCCTACGCCCTGCTGGTGCACCTGGTCGCCCAGGTGGTCGGTCTGCAACCGGGCGACTTC 390 Query 123194 GTGTGGACGGGTGGGGATGTGCATCTGTACTCCAACCACCTGGAGCAGGC 123243 | || || |||| ||| ||||||||||||||||| |||||||| Sbjct 391 ATCCACACCCTGGGCGATGCGCACCTGTACTCCAACCACCTCGAGCAGGC 440 >seq270463 Length=280 Score = 84.2 bits (92), Expect = 3e-11 Identities = 167/242 (69%), Gaps = 4/242 (2%) Strand=Plus/Plus Query 122377 GGACTTACTGCGTGACGTTCGTGACAACGGGCACGAAAAAG-CAGACCGTACGGGCACGG 122435 |||| | ||||| ||||| | || | |||||||| ||| | ||||| || ||||| | Sbjct 39 GGACCTGCTGCGCGACGTGCTCGAGA-CGGGCACGCCCAAGGCCGACCGCACCGGCACCG 97 Query 122436 GCACCCTGTCGTTATTCGG-CGCACAAATGCGCTTTGACCTGCAAAAAGGTTTCCCGCTG 122494 | |||| | ||||| ||| || | || | ||||| | |||||||||||| Sbjct 98 GGACCCGCAGCGTCTTCGGGCGC-CAGCTCCGGTACGACCTCTCCGAGGGTTTCCCGCTG 156 Query 122495 GTCACGACCAAAAAGGTTCACCTCCGCTCCATCATCCATGAGCTTCTGTGGTTCCTCATG 122554 |||| ||||| ||| || ||| || ||| || | ||||| || ||||||||| Sbjct 157 ATCACCACCAAGCGGGTGCATCTCAAGTCGATCGTCTACGAGCTGCTCTGGTTCCTCCGT 216 Query 122555 GGCGATACCAACATCCAGTATCTGAAAGACAACAACGTCAGTATCTGGGATGAATGGGCA 122614 ||||| | ||| | |||| ||| | || || ||||| |||||||| || ||||| Sbjct 217 GGCGACTCGAACGTGCAGTGGCTGCAGGATCACGGCGTCACCATCTGGGACGAGTGGGCC 276 Query 122615 GA 122616 || Sbjct 277 GA 278 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 774938642406800