Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20pachinus_20[genbank_20GCA_5F900068735.1_202017-04-26] 277,083 sequences; 279,264,790 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq10526 244 9e-60 seq28654 109 5e-19 seq27511 89.7 4e-13 >seq10526 Length=5062 Score = 244 bits (270), Expect = 9e-60 Identities = 836/1287 (65%), Gaps = 34/1287 (3%) Strand=Plus/Plus Query 105818 TGTTCATGGCATTGAGTAAATCGCCGTTATCGGCATCTATTTCCCAAGCAAACAAACCGC 105877 ||||||||||||| |||| || || ||||| || || | |||||||||||| | ||| | Sbjct 2944 TGTTCATGGCATTCAGTAGGTCACCATTATCAGCGTCCACTTCCCAAGCAAAGAGACCAC 3003 Query 105878 CCAGTTTGTTTCGATCGACATATTTAACCTTGCCCAAAACAGAATCGA-CGCTATCAAAC 105936 | || ||||| ||||||||| |||| | | |||||| || | | ||||| | Sbjct 3004 CTAGCTTGTTATTTCTTACATATTTACCCTTTTCAATAACAGA-TCTAGCATTATCATAG 3062 Query 105937 GAAATTAAATCCNNNNNNNNNNNNNCAAAAACGTACGAAGCTTGAGCGACATTGTCAAAC 105996 | | | ||| ||||| || | ||||| ||||||||||| | Sbjct 3063 GTTACAAGATCTCCAGTTGATGGTCTGAAAACATAGGGGGCTTGGGCGACATTGTCGTAA 3122 Query 105997 GTGTACACGTACGTG--TTCAG---TTTTGTTTG-AATCTGTCGGTAATCTACGACGCCG 106050 | || | || || || || ||| || | ||||| | ||| || || || ||| Sbjct 3123 TGGAACTCCCACTTGCCTTGAGCAATTTCATTCGCAATCTCCCTGTAGTCAACCACTCCG 3182 Query 106051 TCCTCCCAAGTGCCC--GACACGGGCCCGTTGCCGATTCCCGAAAAATAGTTGTTGCCAG 106108 || | |||||| || |||| || || || || | | || | || ||||| | Sbjct 3183 TCTTGCCAAGTTCCTTTGACA-GGTCCAGTAGC-GTTGCCTGTGAAGGGAATGTTGTCTT 3240 Query 106109 TATAATTGGTCACGCCCGTCCACCCGCGGCCGTACATGGCAACTCCTACGATTATTTTGT 106168 |||| ||||| ||||| || || || ||||| ||||| ||||| | || || | Sbjct 3241 CGTAATCATGAACGCCAGTCCAGCCACGACCATACATAGCAACACCTACTACAATCTTCT 3300 Query 106169 TGGGATCGACGTCTTGTTTCAGCAACGCATCGACCGCGTAATGTGTTGTGTATTTTTCTT 106228 | |||| || | || |||||| | || | | | | |||||| |||| | Sbjct 3301 TAGGATTCACTCCCTGCGCCAGCAAGTATTTTACTCCAAAGTCAGATGTGTAAGTTTCCT 3360 Query 106229 CGGAATTCCAACTAGGCGCATATACCGTCGTTTGATAGCCCAGATCTGTGTTCGACCACG 106288 || |||||| |||||| || | | |||||||| || ||| || ||||| | Sbjct 3361 TGGGATTCCACGCAGGCGCGTACAATGGCGTTTGATGTCCAAGAGTATCATTTGACCAGG 3420 Query 106289 CCCCTTTAAAATCGTAACTCATGAGGAAAATTTTGTCCAAATATTTTTGTGCGTCGTTAT 106348 | || || || ||||||||||| | |||||| | |||| ||| ||||| || | || Sbjct 3421 CTCCCTTGAAGTCGTAACTCATCAAGAAAATATGATCCATATAATTTTGAGCCTTACCAT 3480 Query 106349 AGTTTACCACGGCAATTTTGTCGTAGCCCGCGCTTATAGCGCTGGTTAATTCGTAGAATT 106408 ||| || || ||||| || | || ||||| ||||| ||||||||||| | Sbjct 3481 AGTCAACAACTTGGATTTTATCCCATCCAGCGCTAATAGCAGAAGTTAATTCGTATTTCT 3540 Query 106409 TGCCCGTTT--GCAGTTCTAATTCGTCTAGCATGGCGCGCAACTCTTGCAACAGCACGAC 106466 | || | | |||| | || || ||||| | || || |||| || || || Sbjct 3541 TACCATTCTTAGCAGAG--AGCTCATCGAGCATCTCACGTAATTCTTTCATCAAACTTAC 3598 Query 106467 ATATGTTTCGGCGTCGCGTTCCGCATCGCCCAAAGAAGGATTGGCCCCTTTGCCGCCTGG 106526 ||| || | || ||| | || | ||| || || |||||||| || || Sbjct 3599 ATAACAATCACCATC---TTCTGGGCTACCGAGGTCAGGGTTAGCACCTTTGCCACCAGG 3655 Query 106527 AAATTCCCAATCTATATCGACGCCATCAAAAAATTTCCAAACTTGCAAAAATTCCTTTAC 106586 || |||||||| ||||| || ||||| || |||||||| | | | ||| |||||||| Sbjct 3656 GAACTCCCAATCGATATCAACACCATCGAAGAATTTCCATGTTAGAAGAAACTCCTTTAC 3715 Query 106587 AGAATTTACAAACACGT-TTCTTTTTTCAACGTCATGCATAAAATAGAAGGGGTCTGATA 106645 || | ||||| ||| |||| || |||| | ||| |||| || || | | Sbjct 3716 TGACTGCACAAAT-CGTGTTCTCTTAGATTTGTCAACTAAAAAGAAGAAAGGATCGGCAA 3774 Query 106646 GCGTCCAACCGCCTATAGACGGAAGCACTTTTAAAT----GCGGATTTGCCAATTTAGCC 106701 ||||||| || || ||||| ||||| | || || | |||| ||| ||||| Sbjct 3775 GCGTCCACCCACCAATAGAGGGAAGAATCTTCAATTCAGGGCGGGCTTGT---TTTAGT- 3830 Query 106702 GCCATCAACTGTCCAAAGTTACCCTTGTAAGGCTCGTTCCAAGCGGACACGCCTTTTTGC 106761 | ||| || || |||||||| || ||||| ||||||||||| | |||| |||||||| Sbjct 3831 GACATTAATTGGCCAAAGTTGCCTTTGTAGGGCTCGTTCCATGAAGACAATCCTTTTTGT 3890 Query 106762 GGCTTCTGTATGGCAGCCCAGGGATCGTGAATAGAAACTTTAAAATCGGCGCGCCCTTTG 106821 || || |||| || ||||| |||||||| || || ||||| || || | || || | Sbjct 3891 GGTTTTTGTAATGCTGCCCATGGATCGTGGATTGAGACTTTGAAGTCCTCACGGCCGCTA 3950 Query 106822 CATGATTTTTGCAAAGATTCAAAACTTCCCGGTATTGTTTTTAAGGCATCGTTTATTCCA 106881 || ||| || | | || ||||| || || |||||| ||| || || || Sbjct 3951 CAGGATCGCTGTAGTGCTTGGAAACTGCCTTCGATCTCTTTTAAACTATCATTAATGCCG 4010 Query 106882 TCACCGCCGCAGATGGGAATAAAACCGTACAATAAATGTGATAAATTGGGCAGCGGGACT 106941 ||||||||||| || |||||||| ||||| | ||||| | | ||| || | || | Sbjct 4011 TCACCGCCGCAAATTGGAATAAAGCCGTAGAGCAAATGAGTAAGATTAGGTATAGGTATA 4070 Query 106942 TTATCTACGGGAAAATTGCGGCCATACACGCCCCATTCGACAAAATACGCGGCGACAGTT 107001 ||| ||||| || || | ||| || |||||||| || || || || | ||| | Sbjct 4071 CGATCCACGGGGAATTTCCTAGGATAGACACCCCATTCTACGAAGTAGGCACCCACAACT 4130 Query 107002 TTGTCC---TCTCT-CCTGCCGGGCTCGTTGTTTTCCAGCCATGTGTACTCGAGCGGAGC 107057 || ||| | | | | || |||| || ||||| | |||| || || || |||| Sbjct 4131 TT-TCCAGATGTTTGCTTGAACGGCTTATTTTTTTCTCCCAATGTATATTCCAGAGGAGG 4189 Query 107058 TAGATGGCCGCCGTCGGTGTTTGCCAC 107084 || ||| | || ||||| | ||||| Sbjct 4190 TAAATGACTTCCATCGGTATCGGCCAC 4216 >seq28654 Length=3315 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| ||||| |||||| | || || ||||| ||||| ||| ||| |||| Sbjct 2158 ATGCAAATCTTTGTTAAAACACTCACTGGAAAAACAATTACTTTAGAAGTTGAAGCTTCT 2099 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | || | || |||||| |||||||| || | || |||||| Sbjct 2098 GACACAATTGAAAATGTGAAAGCTAAAATCCAAGACAAAGAAGGCATTCCTCCGGATCAA 2039 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 || | ||||| ||||||||||| ||||| |||||| | || || | || || ||| Sbjct 2038 CAACGTCTTATTTTTGCGGGCAAGCAATTAGAAGATGGTCGTACACTGTCTGACTACAAC 1979 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 || ||||||||||||||| ||||| | ||| | | ||| |||| || || Sbjct 1978 ATCCAAAAAGAATCTACTTTGCACTTAGTACTTCGTTTAAGAGGTGGTAT 1929 Score = 107 bits (118), Expect = 2e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||||||||| |||||||| || || || ||||||||| ||| ||||| || Sbjct 1474 ATGCAAATATTTGTCAAAACATTGACTGGAAAGACCATTACCCTGGAAGTAGAACCATCT 1415 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | || |||| ||||| || || ||||| | ||| ||| ||| Sbjct 1414 GACACAATCGAGAATGTCAAAGCTAAAATACAGGATAAGGAGGGCATCCCCCCAGACCAA 1355 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||| | || || ||||| || || |||||||||||| | ||| || | ||||| || Sbjct 1354 CAGCGTCTCATTTTTGCTGGAAAGCAATTGGAAGATGGTCGCACTTTGTCTGATTACAAT 1295 Query 28734 ATTCAAAAAGAATCTACTCTGCAC 28757 ||||| ||||| || || |||||| Sbjct 1294 ATTCAGAAAGAGTCAACCCTGCAC 1271 Score = 107 bits (118), Expect = 2e-18 Identities = 155/216 (72%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 28551 AAAATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCT 28610 |||||||| || ||||| |||||| | ||||||||||||||||| ||| |||||| Sbjct 2617 AAAATGCAGATCTTTGTGAAAACACTTACGGGTAAAACCATTACTTTGGAAGTTGAACCT 2558 Query 28611 TCAGAGACGGTGGCCGATCT-CAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGA 28669 || || || | | || | |||| |||| || ||||| || || | || ||| Sbjct 2557 TCCGATACTATTGAAAATGTAAAAGCCAAAATTC-AAGACAAGGAAGGCATTCCTCCAGA 2499 Query 28670 TCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTA 28729 |||||| | | || || || || || ||||||||||| ||| | | || || Sbjct 2498 TCAACAACGTTTGATTTTCGCTGGAAAGCAATTGGAAGACGGACGCACTCTTTCTGACTA 2439 Query 28730 TAACATTCAAAAAGAATCTACTCTGCACATGGTATT 28765 ||| |||||||||||||||||||| ||| ||||||| Sbjct 2438 TAATATTCAAAAAGAATCTACTCTTCACTTGGTATT 2403 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| || |||||||| ||| | || || ||||| || || ||| ||||| ||| Sbjct 1018 ATGCAGATCTTTGTAAAGACACTGACAGGGAAAACTATCACATTAGAAGTTGAACCCTCA 959 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | || | || || ||| ||||||||||| | ||| ||||||| Sbjct 958 GACACTATTGAAAATGTTAAAGCTAAGATCCAAGACAAAGAGGGTATTCCCCCAGATCAA 899 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 || | || || || || ||||| || |||| ||| ||| | | || ||||| Sbjct 898 CAACGTCTCATTTTCGCTGGCAAGCAGCTGGAGGATGGCCGTACTCTCTCTGACTATAAT 839 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 ||||| ||||| || ||| ||||| |||||||| | ||||||||||| || Sbjct 838 ATTCAGAAAGAGTCCACTTTGCACTTGGTATTACGTTTACGAGGAGGTAT 789 Score = 98.7 bits (108), Expect = 8e-16 Identities = 152/215 (71%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 |||||| || ||||| || || | || || |||||||| || || || || || Sbjct 2387 AATGCAGATCTTTGTTAAGACTCTTACAGGAAAAACCATCACTTTAGAGGTAGAGCCGTC 2328 Query 28613 AGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || || | | || | ||| ||| ||| ||||||||||| | ||| |||||| Sbjct 2327 CGACACTATCGAAAATGTGAAGGCAAAGATCCAAGACAAAGAGGGTATTCCCCCAGATCA 2268 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGAT--TCTAAAACTATGGCCGATTAT 28730 |||||| ||||| ||||| || |||||| |||||||| | | | ||| | |||||| Sbjct 2267 ACAGAGGCTTATTTTTGCTGGAAAACAACTGGAAGATGGCCGTACATTAT--CTGATTAT 2210 Query 28731 AACATTCAAAAAGAATCTACTCTGCACATGGTATT 28765 || |||||||| |||||||| || || | ||||| Sbjct 2209 AATATTCAAAAGGAATCTACCCTACATTTAGTATT 2175 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| || ||||| ||||| |||| || || ||||||||| ||| |||||| || Sbjct 1930 ATGCAGATTTTTGTTAAAACCCTAACTGGAAAGACCATTACCCTGGAAGTGGAACCCTCT 1871 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | || | || |||||| ||||||||||| | || ||||| Sbjct 1870 GATACTATTGAAAATGTAAAAGCTAAAATCCAAGACAAAGAGGGCATCCCACCTGATCAG 1811 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||| | ||||||||||| || || |||||||||||| | || | | || || ||| Sbjct 1810 CAGCGTCTTATCTTTGCTGGTAAGCAATTGGAAGATGGTCGCACCCTCTCTGACTACAAC 1751 Query 28734 ATTCAAAAAGAATCTACTCTGCA 28756 || ||||| || ||||| || || Sbjct 1750 ATCCAAAAGGAGTCTACCCTTCA 1728 >seq27511 Length=800 Score = 89.7 bits (98), Expect = 4e-13 Identities = 104/137 (76%), Gaps = 5/137 (4%) Strand=Plus/Plus Query 28632 AAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAACAGAGACTTATCTTTGCG 28691 ||||||||| || || ||||||||| | ||| |||||| || |||||||| ||||| Sbjct 68 AAGCAAAAATTCAG-GATAAAGAGGGAATTCCCCCAGATCAGCAAAGACTTATTTTTGCT 126 Query 28692 GGCAAACAATTGGAAGATT--CTAAAACTATGGCCGATTATAACATTCAAAAAGAATCTA 28749 || || || | |||||| | | ||||| | ||||| |||||||| |||||||||| Sbjct 127 GGAAAGCAGCTTGAAGATGGACGCACACTAT--CTGATTACAACATTCAGAAAGAATCTA 184 Query 28750 CTCTGCACATGGTATTA 28766 || ||||| | ||| || Sbjct 185 CTTTGCACCTAGTACTA 201 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 423968229659457