Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20pachinus_20[genbank_20GCA_5F900068735.1_202017-04-26] 277,083 sequences; 279,264,790 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq13366 185 4e-42 >seq13366 Length=6323 Score = 185 bits (204), Expect = 4e-42 Identities = 273/384 (71%), Gaps = 2/384 (1%) Strand=Plus/Plus Query 25922 TCAACTTTCTCCATAAATAAATCTGGAATCCACATTGCATAAAATAAATCTCTCGCTCTC 25981 || ||| | | |||||| | |||||| ||||| | |||||||| | ||||| |||||| Sbjct 1735 TCTACTCTTTTCATAAACAGATCTGGTATCCATAAAGCATAAAACAGTTCTCTAGCTCTC 1794 Query 25982 ATTTCTTCTTTTCC-GTGATTCTTTTTTAGATCTAAGAAATCAAAAATATCTGAGTGCCA 26040 |||||||| || || ||| ||||| |||| ||| ||||| ||||| ||||| | ||||| Sbjct 1795 ATTTCTTCCTTACCTGTG-TTCTTCTTTAAATCCAAGAATTCAAATATATCCGCATGCCA 1853 Query 26041 TGGTTCTAAATAGATAGCAAAACTACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCT 26100 || |||||||| || ||||| || | ||| ||||||||||||||| ||||| Sbjct 1854 AGGCTCTAAATAAATTGCAAATGCGCCGGGACGTTTGTTTCCACCTTGATCTACATATCT 1913 Query 26101 TGCAGTTTCATTGAAAACTTTCAACATTGGAACTAATCCAGTTGAAAATCCGTTTGTGCT 26160 ||||| | || | ||| |||||||||| |||| ||| |||| | || || |||| Sbjct 1914 GGCAGTATTGTTATACACTCTCAACATTGGCACTAGACCATTTGAGACCCCATTAGTGCC 1973 Query 26161 ATGAATCTTGGATCCTGTCGATCTAATATCGTGAGCATGAATACCGATTCCACCAGCCCA 26220 | || | || || | ||| || || | ||| | ||| || |||||||| | Sbjct 1974 AGCTATGTAAGAACCCTGAGCTCTGATGCAATGTGTATGTAAACCTATGCCACCAGCAGA 2033 Query 26221 TTTTGAAATAGCTGCACAATCTGAAACTGTATCGAAAATTCCTTTTATGCTATCACCTTT 26280 ||| ||||| |||||| | | | ||||| ||||| |||| |||||||| |||| Sbjct 2034 TTTAGAAATTAATGCACATTGTTTTAAAGTATCAAAAATACCTTCAATGCTATCGTCTTT 2093 Query 26281 CATTCCTAATAAAAAACAAGAAGA 26304 ||| ||| | ||||| || || Sbjct 2094 CATAGCTATAAGGAAACAGGAGGA 2117 Score = 125 bits (138), Expect = 4e-24 Identities = 353/529 (67%), Gaps = 16/529 (3%) Strand=Plus/Plus Query 24645 CGATATTTT--CTTTTTCTAATGTAAATTGCTTAGCTGATACTGCTGGTTTAGTTC-TAA 24701 || |||||| |||| |||| ||||| || |||| | |||||||||| || | ||| Sbjct 492 CGTTATTTTACCTTTGTCTACAGTAAACTGAATAGCATTTGCTGCTGGTTTTGTGCGTAA 551 Query 24702 GATAATACATTCCAGTTTTCAATTTCTTCTTCCAACCGTAAAAATGCATTGATGTTAGTT 24761 | || |||||||| ||||| ||| | | |||||| ||| ||||| || || || |||| Sbjct 552 G-TAGTACATTCCTGTTTTTAATCCCATTTTCCAAGCGTGGAAATGAATCGACGTAAGTT 610 Query 24762 TTGCAATGTTTGCTGATTCTAAAAACAAGTTCATCGATTGAGCTTGGCAAACAAAACGTT 24821 || || ||| | | | | | | ||| | |||||| |||| | |||| | Sbjct 611 TTCCATAGTTAGGTTTAGCAACATGTATGTTAAAAGATTGACTTTGGTCTATAAAAGCTC 670 Query 24822 GTCTATCTGCAGCTAAGTCAATGATCGTTTTCATCGATATATCGTAAGCTGTTTTGTATC 24881 |||||| || || | | ||| ||||||| || || || | | |||||||| Sbjct 671 CTCTATCAGCTGCCATCTGTATGGATGTTTTCAGTGAAATCTCCCATACGGTTTTGTACA 730 Query 24882 TCTCTTTTATCTCAGTTGGAATACTTGCAATATTTTGAACTGATCCATT-TTCTCTC-AA 24939 ||| |||| || | ||||| || |||| | ||| | |||||||| || | | || Sbjct 731 AATCTCTTATTTCTTTAGGAATTTTTTCAATTTCTTGTATAGATCCATTGTTGTATATAA 790 Query 24940 TA-GATTCAATCTCATATTCGGTGTCCAAAGATTAATTTTT-TCAAGATCTCTAATCAAG 24997 || |||| | |||||| ||| | || | |||| ||| | | | Sbjct 791 TAAGATT---TTTCATATCTTCATCCCACAAATCAGCCCGAGTCAA-ATCAGTCAGAAGA 846 Query 24998 TGTTTATTTATGATAATAAATTCTCCAGACAAAACTCTTCTTATTGATAA--GTTTGAAG 25055 || | || | | | |||||||||||| || |||||||| ||| ||| ||||| | Sbjct 847 TGATGGTTCACTACAGGAAATTCTCCAGATAAGACTCTTCT--TTGGTAAATATTTGATG 904 Query 25056 TGAATGGTTCAAAACATTCATTATTTCCTAAGATTTGAGAAGTAGATGCTGTTGGCATTA 25115 | || ||||||||| ||||| | || || | ||||| | |||||| || || ||||| Sbjct 905 TAAAGGGTTCAAAAGATTCAGTGTTGCCAAGAATTTGTGCAGTAGAGGCAGTCGGCATAG 964 Query 25116 ATGCTATTAATAGCGAATTTCTCAAACCATATTTAACAATCTCTTGTTT 25164 ||||| ||||| ||||| | |||||||| ||| | |||| || ||| Sbjct 965 GAGCTATCAATAGAGAATTGCGCAAACCATGTTTTGCTATCTTTTCTTT 1013 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 252185496809225