Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20pachinus_20[genbank_20GCA_5F900068735.1_202017-04-26] 277,083 sequences; 279,264,790 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq28654 141 1e-28 seq27511 132 7e-26 seq27512 122 1e-22 seq7533 120 4e-22 seq141872 95.1 2e-14 >seq28654 Length=3315 Score = 141 bits (156), Expect = 1e-28 Identities = 125/156 (80%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| |||||||| | ||||||||||| ||||| |||||||| |||| |||| Sbjct 2158 ATGCAAATCTTTGTTAAAACACTCACTGGAAAAACAATTACTTTAGAAGTTGAAGCTTCT 2099 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| ||| |||||| |||||| ||||| ||||||||||| ||||| || ||| Sbjct 2098 GACACAATTGAAAATGTGAAAGCTAAAATCCAAGACAAAGAAGGCATTCCTCCGGATCAA 2039 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGAT 155978 ||| | | |||| ||| || ||||| | |||||| Sbjct 2038 CAACGTCTTATTTTTGCGGGCAAGCAATTAGAAGAT 2003 Score = 127 bits (140), Expect = 3e-24 Identities = 154/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||||||| | ||||||||||||||||| || ||||| | ||||| ||| ||| Sbjct 1474 ATGCAAATATTTGTCAAAACATTGACTGGAAAGACCATTACCCTGGAAGTAGAACCATCT 1415 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || || || ||| ||||||||| ||||| || ||||| || ||||| ||| Sbjct 1414 GACACAATCGAGAATGTCAAAGCTAAAATACAGGATAAGGAGGGCATCCCCCCAGACCAA 1355 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || | | |||| ||| || ||||| | |||||| | ||||| || ||||| ||| Sbjct 1354 CAGCGTCTCATTTTTGCTGGAAAGCAATTGGAAGATGGTCGCACTTTGTCTGATTACAAT 1295 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTG 156032 || |||||| | || || || |||||| Sbjct 1294 ATTCAGAAAGAGTCAACCCTGCACTTAGTG 1265 Score = 123 bits (136), Expect = 4e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | || ||| |||| || |||||||| ||||||||||| ||| || Sbjct 1018 ATGCAGATCTTTGTAAAGACACTGACAGGGAAAACTATCACATTAGAAGTTGAACCCTCA 959 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | |||| ||| || ||| ||| || ||||| ||||| || || || ||||| ||| Sbjct 958 GACACTATTGAAAATGTTAAAGCTAAGATCCAAGACAAAGAGGGTATTCCCCCAGATCAA 899 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| | | |||| || || |||||||| || ||| | | ||| | || || |||||| Sbjct 898 CAACGTCTCATTTTCGCTGGCAAGCAGCTGGAGGATGGCCGTACTCTCTCTGACTATAAT 839 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 || |||||| | || | || || || ||| | ||| |||| ||| Sbjct 838 ATTCAGAAAGAGTCCACTTTGCACTTGGTATTACGTTTACGAGGAGGT 791 Score = 118 bits (130), Expect = 2e-21 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||||||| | |||||| | ||||||||||| || || || ||||| || || Sbjct 1247 AATGCAAATATTTGTCAAAACACTTACTGGAAAAACAATAACTTTGGAAGTTGAGCCATC 1188 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 || | ||| ||| || ||| ||| || |||||||| ||||| || |||||||| || Sbjct 1187 AGACACCATTGAAAATGTTAAAGCTAAGATTCAAGATAAGGAAGGAATTCCTCCAGATCA 1128 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 |||| | | || | || ||||| || || |||||| | | || | || || || || Sbjct 1127 ACAACGTCTTATCTTCGCTGGTAAACAACTGGAAGATGGCCGCACCCTGTCTGACTACAA 1068 Query 156002 TATATCCAAAGAGGCGACGCTTCATTTAGT 156031 ||| |||||| |||| ||||| || || Sbjct 1067 TATCCAGAAAGAGTCGACCCTTCACTTGGT 1038 Score = 104 bits (114), Expect = 3e-17 Identities = 153/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 |||||| || ||| |||| || | || |||||||| || || ||||| || || || Sbjct 2387 AATGCAGATCTTTGTTAAGACTCTTACAGGAAAAACCATCACTTTAGAGGTAGAGCCGTC 2328 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 || | ||| ||| ||||| || || ||||| ||||| || || || ||||| || Sbjct 2327 CGACACTATCGAAAATGTGAAGGCAAAGATCCAAGACAAAGAGGGTATTCCCCCAGATCA 2268 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 ||| || | |||| ||| || || || || |||||| | | || ||||| |||||||| Sbjct 2267 ACAGAGGCTTATTTTTGCTGGAAAACAACTGGAAGATGGCCGTACATTATCTGATTATAA 2208 Query 156002 TATATCCAAA-GAGGCGACGCTTCATTTAGTGTT 156034 ||| || ||| || | || || |||||||| || Sbjct 2207 TAT-TCAAAAGGAATCTACCCTACATTTAGTATT 2175 Score = 93.3 bits (102), Expect = 6e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||||||| | || ||| | || || || ||||| || | || || || ||| Sbjct 1702 ATGCAAATATTTGTCAAGACACTAACAGGCAAGACTATAACTCTGGAGGTGGAGCCATCT 1643 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| ||| || || ||| || ||||||||||| || || || ||||| ||| Sbjct 1642 GACACCATTGAAAATGTAAAGGCTAAGATTCAAGATAAAGAGGGTATTCCCCCAGATCAA 1583 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| | | || | ||| || |||||||| |||||| | || | || || || || Sbjct 1582 CAACGTCTTATCTTTGCTGGCAAGCAGCTAGAAGATGGTCGCACCCTGTCTGACTACAAC 1523 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGT 156031 || |||||| | || ||||||||||| Sbjct 1522 ATCCAAAAAGAGTCTACCCTTCATTTAGT 1494 >seq27511 Length=800 Score = 132 bits (146), Expect = 7e-26 Identities = 139/183 (76%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| ||| | || ||| ||||||| |||||||| || || ||||| |||| ||| Sbjct 216 AATGCAAATTTTTGTAAAGACACTGACTGGCAAAACTATCACTTTGGAAGTGGAAGCTTC 275 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 ||||| || ||| || || || || ||||| ||||||||||| ||||| || || Sbjct 276 TGATACAATAGAAAATGTTAAGGCAAAGATTCAAGACAAAGAAGGCATTCCTCCTGACCA 335 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 ||| || | |||| ||| || || ||||| |||||| | || || ||||||||||| Sbjct 336 ACAGAGGCTTATTTTTGCAGGAAAACAGCTGGAAGATGGACGTACATTGTCAGATTATAA 395 Query 156002 TAT 156004 ||| Sbjct 396 TAT 398 Score = 104 bits (114), Expect = 3e-17 Identities = 99/127 (78%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||||||| | || ||| ||||||| || ||||| ||||| ||||| |||| ||| Sbjct 672 AATGCAAATATTTGTAAAGACACTGACTGGCAAGACTATCACATTGGAAGTGGAAGCTTC 731 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 ||||| ||| ||| || || ||||| || |||||||| || || || ||||| || Sbjct 732 TGATACAATTGAAAATGTTAAGGCGAAAATTCAGGATAAAGAGGGAATTCCCCCAGATCA 791 Query 155942 ACAAAGA 155948 |||||| Sbjct 792 GCAAAGA 798 >seq27512 Length=242 Score = 122 bits (134), Expect = 1e-22 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||||||| | || ||| ||||||| || ||||| ||| | ||||| || || Sbjct 228 AATGCAAATATTTGTAAAGACACTGACTGGCAAGACTATCACACTGGAAGTTGAGCCCTC 169 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 ||| | || ||| || || ||||| |||||||| |||||||| |||||||| || Sbjct 168 TGACACAATCGAAAATGTTAAGGCAAAAATTCAAGATAAGGAAGGCATTCCTCCAGACCA 109 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 |||||| | |||| ||| || |||||||| || ||| | || ||||||| || || Sbjct 108 ACAAAGGCTTATTTTTGCTGGAAAGCAGCTTGAGGATGGACGTACACTATCAGACTACAA 49 Query 156002 TATATCCAAAGAGGCGACGCTTCATTTAGT 156031 ||| ||||| | || | |||||||| Sbjct 48 TATTCAGAAAGAATCTACTTTACATTTAGT 19 >seq7533 Length=2710 Score = 120 bits (132), Expect = 4e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 18413 TCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATACATTTCAGAATGTATGCTT 18472 || || | ||| ||||||| ||||| ||||| ||||| ||||| || ||||| | || Sbjct 1040 TCCTTAGGATCCCTTATATATGTGTCAATTAATAAAGAGTACATCTCTGAATGAACATTT 981 Query 18473 TCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGGGATATTGAATCTCGCTATAA 18532 |||||||| || ||||||| ||| || | || || || | ||||| ||| || Sbjct 980 TCCATAGCAATTTGAAAACCATAGAAGCACCTGGCTTCAGTCACTTGAACCTCTTGTGAA 921 Query 18533 AATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCAGATGCGAAAAATGCCAAAACA 18592 || | || ||||| ||||||||||| ||||| |||| || || || ||||| || ||| Sbjct 920 AAACGCTCCACCAAGTTCTCATTAACAATACCATCAGAAGCCGCAAAGAATGCTAAGACA 861 Query 18593 TATTTAATGAAATGTTTTTCATTATCCTT 18621 | || || |||||||| ||| ||| || Sbjct 860 TGCTTGATAAAATGTTTCTCACAATCTTT 832 >seq141872 Length=750 Score = 95.1 bits (104), Expect = 2e-14 Identities = 66/75 (88%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 17869 GTATTCTCCGACTTTTTTCTCGAAGAAATTTGTCTTTCCTTCCAATGATATTAAATTCAT 17928 ||||||||| ||||| ||||| ||||||||||| || ||||||||||| || | |||||| Sbjct 684 GTATTCTCCAACTTTCTTCTCAAAGAAATTTGTTTTGCCTTCCAATGAGATGAGATTCAT 625 Query 17929 AAAATCAAATGGATT 17943 |||||| |||||||| Sbjct 624 AAAATCGAATGGATT 610 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 729337133882800