Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20pachinus_20[genbank_20GCA_5F900068735.1_202017-04-26] 277,083 sequences; 279,264,790 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq77242 170 6e-37 seq13366 134 4e-26 seq26642 129 2e-24 seq257481 127 6e-24 seq245031 89.7 2e-12 seq78968 87.8 5e-12 seq14493 87.8 5e-12 >seq77242 Length=3334 Score = 170 bits (188), Expect = 6e-37 Identities = 343/498 (69%), Gaps = 12/498 (2%) Strand=Plus/Minus Query 288849 CCTATCAAACCTACCAGAACGAGTTAATGCTGGGTCTAATATATCGGCTCTGTTTGTTGC 288908 ||||||||| ||||||| | ||| ||| |||||| || || ||||||| || || Sbjct 1646 CCTATCAAATCTACCAGGTCTTAATAAGGCTTTGTCTAAAATGTCCACTCTGTTAGTAGC 1587 Query 288909 TGCCAATACAACAATAGATTCGGT-TTGC-TTAAATCCATCCATACTTGTTAAAATTTGA 288966 || ||||| |||| | || | | ||| || || |||||||| || || ||| Sbjct 1586 AGCTAATACTACAACA--TTGGTTGTTGTATTGAAACCATCCATTTCCACTAGAAGCTGA 1529 Query 288967 TTAAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATCACCCGAATCGCTCCttttt 289026 ||||| || | ||| ||| || ||||| || | | | || ||| ||||| Sbjct 1528 TTAAGAGTATTTTCTTGTTCTGAATG---ACCTCCAAAA-CTTCTGCCTC-CTC-TTTTT 1475 Query 289027 ttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATT 289086 ||||||||||||| ||||| ||||| || | | ||| |||| || || | || ||| Sbjct 1474 CTACCAACAGCATCTATTTCATCAATAAATAATATACATGGAGCATGTTTCCGTGCCATT 1415 Query 289087 GCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAA 289146 | || | || || || | || | |||| ||||||| ||||||||| ||| || ||| Sbjct 1414 GAGAACATATCCCTGACCCTAGAGGGACCAACACCAACAAACATTTCTAAAAACTCTGAA 1355 Query 289147 GCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTC 289206 | |||||| ||| || | ||||| || || || ||| ||| | || ||||| || Sbjct 1354 CCTGATACTGTAATAAAGGGAACATTAGCCTCTCCAGCTGTTGCTTTAGCTAGAAGAGTT 1295 Query 289207 TTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAGAC 289266 ||||| |||||||| ||||| ||||| ||||||| || | ||| || || || | Sbjct 1294 TTACCAGTTCCAGGGGGTCCTGTTAATAAGGCTCCCTTAGGAATTTTAGCTCC-TAAGTC 1236 Query 289267 -TTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTC 289325 |||||| || |||| |||| || || | |||| |||| || |||| ||| || || Sbjct 1235 AATATATTGCTGAGGGTTCTTCAAGAAATTGACAAATTCCATAATTTCAATTTTAGCTTC 1176 Query 289326 ATCACATCCTGCTACATC 289343 ||||| || || ||||| Sbjct 1175 CTCACAACCAGCAACATC 1158 >seq13366 Length=6323 Score = 134 bits (148), Expect = 4e-26 Identities = 578/899 (64%), Gaps = 36/899 (4%) Strand=Plus/Plus Query 155475 GGGTAAAAATTCACATCAATAATGTTATTTAAATTT---GTAACCAATACCTTGGTTACG 155531 || |||||||| |||||||||| || ||||||||| || || ||| ||| || | Sbjct 1306 GGATAAAAATTAACATCAATAACTTTGTTTAAATTTTGAGTTAC-AAT--CTTTGTGATT 1362 Query 155532 TCTGCTAATTTCACATAGTCAAATGTTTTATCCTCATTTACAAACATACCAAGACCAATA 155591 ||| |||||| | | | |||| | |||| ||| |||||||| ||| | || Sbjct 1363 TCTTTTAATTTTTTAAAATTAAATCTGTTATTTTCA---ACAAACATGTTAAGTGCTATG 1419 Query 155592 GACGCCAGATTACATACCGCAGTCTCCTTGTCGTCGCTGTATTCTACAATCTCACAGCAC 155651 || || || || || || || || | || |||||| |||| |||| ||| Sbjct 1420 GAAGCAAGGTTGCACACTGCCACTTCATCTTCTGAAGTGTATTGCACAACCTCAGTGCAA 1479 Query 155652 AGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTGTTACAAGCATCC 155711 || || || || || ||||| | ||| || || ||| || ||||||||||||||| Sbjct 1480 AGATTGCTACATTTAATAGTGCCAAGATTTTTTTGATTACTCTTTCTGTTACAAGCATCC 1539 Query 155712 TTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAAT---CTTTAGCCAG 155768 || || | |||||||| || || ||||||| || || || | ||| ||| ||| Sbjct 1540 TTATACAACATGTATGGTGTACCAGTCTCCACTTGGGCTTCTATAATTGACTT---CCAT 1596 Query 155769 AGGTCACGGGCATTAATTTGCTTGTTGTATCTGCCTTCCGACTCATATTT--CATATACA 155826 | || | || | | ||| || | ||| ||| |||||||| |||||| Sbjct 1597 AACTCTTGAGCTCTGACTTGTTTTATAAATCGTTTTTCTTCTTCATATTTGGCATATA-- 1654 Query 155827 GCGTTCGGTAA--TCCTCACCGTAACAATCACTCAGTCCAGGGCACTTATCGGGGCAAAA 155884 |||| || ||||| || | || ||| || ||||| || | || || || | Sbjct 1655 --GTTCTTCAAATTCCTCTCCAAAGCAGTCAGCGAGGCCAGGACAATCATGAGGACACAT 1712 Query 155885 CAGCGACCAAATTTTATTACCGAT--TACACGCTCCATAAATACATCACTCGCCCAAATA 155942 || ||||| || || || | ||| | | |||||| | ||| ||| | | Sbjct 1713 GAGACTCCAAACTTCAT--CCTTTTCTACTCTTTTCATAAACAGATCTGGTATCCATAAA 1770 Query 155943 GCATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCC-GTGATTCTTCCGTAGCTCTAA 156001 ||||| || || || || || | || || | || ||| |||||| || || || Sbjct 1771 GCATAAAACAGTTCTCTAGCTCTCATTTCTTCCTTACCTGTG-TTCTTCTTTAAATCCAA 1829 Query 156002 GAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAAACTACC---ATTCCT 156058 |||||| ||||| | ||| ||||| | ||| || ||||| || | | Sbjct 1830 GAATTCAAATATATCCGCATGCCAAGGCTCTAAATAAATTGCAAATGCGCCGGGACGTTT 1889 Query 156059 CTTGCCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAATAAT 156118 || ||||| ||||||||||| | ||||| || || | || | | ||| || | | Sbjct 1890 GTTTCCACCTTGATCTACATATCTGGCAGTATTGTTATACACTCTCAACATTGGCACTAG 1949 Query 156119 ACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGCGAACAT--TATGA 156176 |||||| || ||||| || || || | ||||| ||||| || ||| Sbjct 1950 ACCATTTGAGACCCCATTAGTGCCAGCTATGTAAGAACC--CTGAGCTCTGATGCAATGT 2007 Query 156177 ATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCTTTACAGTATTG 156236 |||||| || || ||||| | ||||||||||| || |||| |||| ||||| Sbjct 2008 GTATGTAAACCTATGCCACCAGCAGATTTAGAAATTAATGCACATTGTTTTAAAGTATCA 2067 Query 156237 AAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCACGAACTTAATTGAGGT 156296 |||||||||||||| ||| |||| ||| | || || | || || | || || Sbjct 2068 AAAATACCTTCAATGCTATCGTCTTTCATAGCTATAAGGAAACAGGAGGAAAGCTGTGGC 2127 Query 156297 CGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAATACTTATTAGACAT 156355 || ||||| | ||| ||| |||||||| ||||||| ||||||| || | ||||| Sbjct 2128 CGCGGTGTGGCTGCGGAGAACAGTGTAGGGCTTGCATGTGTAAAATATTTCTCTGACAT 2186 >seq26642 Length=11175 Score = 129 bits (142), Expect = 2e-24 Identities = 209/295 (71%), Gaps = 8/295 (3%) Strand=Plus/Plus Query 302553 ATCATAACCAATCATAA-TGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAG 302611 ||||||| | ||||| || || ||||| ||| ||||||||||||||||| ||||||| Sbjct 8566 ATCATAATGTACCATAACTGACT-CCATAGCCTTTATTAAACGACGCTGAATGTAACCAG 8624 Query 302612 TTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGA 302671 || || ||||||||||| |||||||| ||||| ||||||| ||||| || ||||| Sbjct 8625 TTTCAGCAGTTTTTACAGCGGTATCAATGAGACCTTCACGACCTCCCATGGCGTGGAAAT 8684 Query 302672 ATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGG 302731 | | ||| ||| | || ||| | || | || |||||||| | | || | Sbjct 8685 AAAACTCAGAGGGTGTCAAGCCGGCAAGGTATGAATTTTCGACGAAACCTCTAGATTCTG 8744 Query 302732 G--CG-AATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGA 302788 | || ||||||| ||| | || ||||||| || || || | | ||| | || | Sbjct 8745 GACCGTAATCGTC---TTTGATGAAATGTGGCAATGTTCTTTTACGAAAACCGAACGGAA 8801 Query 302789 TACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCGAAATATT 302843 |||||||||| ||||||||||| || || | || | ||| | ||| || || || Sbjct 8802 TACGCTTTCCTTCAACGTTCTGTTGCCCTACACAAGCAATAACCTGTGAGATGTT 8856 >seq257481 Length=676 Score = 127 bits (140), Expect = 6e-24 Identities = 177/248 (71%), Gaps = 0/248 (0%) Strand=Plus/Plus Query 302569 ATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACA 302628 || ||||| | | ||||| | ||| ||||| || |||||||| | || || || Sbjct 85 ATATCTTCAAGAGCCTTGACAAGACGGCGCTGGATGTAACCAGTCTCTGCGGTCTTGACC 144 Query 302629 GCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGT 302688 || || ||||| ||||| | || || |||| ||||||||||| | || | |||| Sbjct 145 GCAGTGTCAATAAGACCTTCGCGTCCTGCCATGGCATGGAAGAAGAATTCCTGCGGTGTA 204 Query 302689 AGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTG 302748 || || | | | | ||| |||||||||| || | || ||||| |||| ||| ||| Sbjct 205 AGACCACGCAGATATGAGTTCTCAACGAAGCCTCTCGATTCGGGTGAATAATCGTCTTTG 264 Query 302749 GTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTC 302808 |||||||| |||| ||| | || ||||||| ||||||||||| || || |||||| Sbjct 265 GTAAAGTGAGGCAAGGTGCGAAACTTGAAGCCGTACGGGATACGCTTGCCTTCGACGTTC 324 Query 302809 TGCTGTCC 302816 |||||||| Sbjct 325 TGCTGTCC 332 >seq245031 Length=307 Score = 89.7 bits (98), Expect = 2e-12 Identities = 127/177 (72%), Gaps = 4/177 (2%) Strand=Plus/Minus Query 302702 AGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCA 302761 ||||| |||| || ||||| | ||||||||||| ||| ||| ||||| || |||| Sbjct 276 AGGAGTTCTCGACAAAACCTTTAGACTCGGGCGAATAGTCATCCTTTGTAAAATGGGGCA 217 Query 302762 GGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGC 302821 | || |||| | | | || |||| |||||||| || ||||| ||||||| || | || Sbjct 216 GCGTTCTGTCCACGAATCCAAATGGAATACGCTTACCTTCAACAATCTGCTGGCCTACGC 157 Query 302822 ACGAAATCATCTGCGAAATATT--TAAATCACTGCCCTTGGAGCCAGCATTTACCAT 302876 | | | ||||||||| || || ||||| | || || || |||||| ||||| Sbjct 156 AAGCAGACATCTGCGAGATGTTGATAAATGA--ACCTTTAGATCCAGCAACCACCAT 102 >seq78968 Length=2099 Score = 87.8 bits (96), Expect = 5e-12 Identities = 159/231 (69%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 251425 CACACATGGACGCTGTAAGCATCAGATGCGTCATATAGCCGACCCTTGGTGAAGCGAG-- 251482 || |||||||| | ||| ||||| || | ||| | | ||| | ||| ||| || Sbjct 1936 CAGACATGGACACGGTAGGCATCCGAGACATCAAACATCCGCTCTTTGAGGAATGCAGCA 1877 Query 251483 ATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGC 251542 |||| |||| |||||||| || ||||||||||| || |||||||| | |||||| || | Sbjct 1876 ATGC--CGTGAGAAATCATGCAGTCACGCTCCATCTCTCCGAAACGCAAACCACCGTCAC 1819 Query 251543 GAGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGACCGATGGAGCGGCTAT 251602 | | | |||||| | ||||| || |||||| | | ||||| | ||| || Sbjct 1818 GGGAACGACCCTCCACCGGCTGGCGCGTGAGAATTTGGAGGGGACCACGTGCGCGCGAAT 1759 Query 251603 GTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCGGGACCGA 251653 | ||| || || ||||| ||||| | ||||| || | | ||||||| Sbjct 1758 GAATCTTGTCGTTAACCATGTGCTTCAATCGCTGATAATACGTCGGACCGA 1708 >seq14493 Length=16242 Score = 87.8 bits (96), Expect = 5e-12 Identities = 389/598 (65%), Gaps = 25/598 (4%) Strand=Plus/Minus Query 251404 GCGATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGC 251463 || || |||||||| |||||| || || | | ||| | |||||| | ||| | || Sbjct 15287 GCTATCAGACCACAGAAATTACAAACGTGAATACGGTACGGATCAGAAACTTCAAAGAGA 15228 Query 251464 CGACCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCG 251523 || | | ||| | | |||||||| | || ||||||||| |||||||| || Sbjct 15227 CGTTCTCTCAAGAACTGTGCGGCACCGTGAGCGATTTGACAATCACGTTCCATTTCCCCA 15168 Query 251524 AAACGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACG-AGTGAGATTA--ACC 251580 ||||| | ||| || || ||||| | || || ||| || || | | ||| ||| Sbjct 15167 AAACGCAAACCTCCGTCACGAGCACGCCCTTCCATAGGTTGTCGTACCAAAATTTGTACC 15108 Query 251581 ATAGGACCGATGGAGCGGCTATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAG 251640 || || | | | ||| || |||| |||||||||||| ||||||||||| Sbjct 15107 ---GGTCCTCTTGCTCTCGAATGAATTTTGTCATCTACCATATGCTTAAGACGCTGGTAA 15051 Query 251641 AATGCGGGACCGATGAAGATGCTCGAAGGCATTTGCTCTCCAGTTAGAGCGTTATACATA 251700 ||| |||||| | ||| | || | || | |||||| || |||||||||| Sbjct 15050 TATGTGGGACCCAAGAATACTTGCGCATTAATCTTTCGTCCAGTATGACCGTTATACATC 14991 Query 251701 ACTTCGTTTCCATTAGAT-TCATAACCAAGTTTCTGTAGCTCTGAAGCAATAT-CACCAA 251758 |||||||| || | || | ||| || | ||||| |||| ||| | | || Sbjct 14990 ACTTCGTTACC-TCGGAGGTGATAGCCGTACTCTTGTAGTAAAGAAGAAATTTTCTGCA- 14933 Query 251759 TCTTGAAT----TTGCTAAAACTGGTGC--CGTCTCCGTAAAGACCCAT-TTGAATCAAC 251811 | | || | | |||| ||||| |||| ||| ||| | || || | | Sbjct 14932 -CGTTAACGGCATCGTTAAA--TGGTGTTGCGTCACCGATTTCTCCCTTGTTTGATGA-C 14877 Query 251812 ACTTTGCCTAAAAGTGTCTCTTTCAGTTGGGCGATAGTCATACGACTGGGAATAGCATGG 251871 || || ||| || || ||| || | || ||||||||| || || |||||| Sbjct 14876 ACCTTTCCTTGAATACATTCAATCAAGTGACCAATTGTCATACGAGAAGGGATGGCATGG 14817 Query 251872 GGATTGATGATGATGTCGGGTTTCAGTCCATCAGCA-GTGAAGGGCATATCCTTTTCCTC 251930 ||||| || ||||| || ||| | | || || ||| || || |||||||| | || || Sbjct 14816 GGATTAATAATGATATCTGGTGTTAAGCCCTC-GCATGTAAACGGCATATCTTCTTG-TC 14759 Query 251931 AATAATGT-TTCCAATAGTTCCCTTTTGTCCGTGACGAGAACTGAACTTATCACCAAT 251987 ||| || ||||| ||||| ||||| |||||||||||| |||||||| ||||| Sbjct 14758 GATACTGGATTCCACAGGTTCCTTTTTGACCGTGACGAGAAGCAAACTTATCTCCAAT 14701 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1466592462162971