Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20pachinus_20[genbank_20GCA_5F900068735.1_202017-04-26] 277,083 sequences; 279,264,790 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq15523 176 4e-39 seq10526 149 5e-31 seq27511 107 2e-18 seq133356 104 2e-17 seq76306 100 2e-16 seq41046 87.8 1e-12 seq28654 87.8 1e-12 >seq15523 Length=5906 Score = 176 bits (194), Expect = 4e-39 Identities = 204/275 (74%), Gaps = 0/275 (0%) Strand=Plus/Minus Query 103796 CGCATGCCCGGCCCCGCGCACCCTCGGTTCGCCTCCGAGGCCTCAAGGTTACAAACTTTT 103855 ||||||||||| |||| |||| | || | |||||||||||| | | | | | || Sbjct 5887 CGCATGCCCGGTCCCGTGCACGCGCGCTACGCCTCCGAGGCGGCCCGCCTGCGCAGCTTC 5828 Query 103856 AAGGATTGGCCCCGGAGTCTGAAACAGAAACCGGAGAAGATGGCCGAAGCCGGATTCTAC 103915 | || ||||| || ||| |||| ||||| || ||| | | |||||||| ||||||| | Sbjct 5827 AGCGACTGGCCTCGCAGTATGAAGCAGAAGCCTGAGGAACTCGCCGAAGCGGGATTCTTC 5768 Query 103916 TACACCGGCCACAGCGACAACACGAAATGCTTCTACTGCGACGGTGGTCTAAAGGATTGG 103975 ||||||||||| | ||||| || || ||||||||||| ||||| || || ||||| ||| Sbjct 5767 TACACCGGCCAGGGTGACAAAACTAAGTGCTTCTACTGTGACGGCGGACTCAAGGACTGG 5708 Query 103976 GAGCACGATGATGAGCCGTGGCAACAACACGCGCTTTTCTTTCGCCGTTGCGCATACGTG 104035 ||| |||| || | ||||||| | || ||||| | | || ||| ||||| |||||| Sbjct 5707 GAGAACGACGACGTGCCGTGGGAGCAGCACGCACGCTGGTTCGACCGGTGCGCCTACGTG 5648 Query 104036 CTACTTGTCAAGGGCCACGATTATGTACAAAAGGT 104070 | || ||||| |||| || || || || ||||| Sbjct 5647 CAGCTGGTCAAAGGCCGAGAGTACGTCCAGAAGGT 5613 >seq10526 Length=5062 Score = 149 bits (164), Expect = 5e-31 Identities = 329/492 (67%), Gaps = 6/492 (1%) Strand=Plus/Minus Query 29072 TGCGTATTTTGTAGAATGGGGCGTATATGGCCGCAACTTTCCGGTAGACAAAGTGCCGCT 29131 ||| || || ||||||||||| || ||| | || || || || || | || | Sbjct 4121 TGCCTACTTCGTAGAATGGGGTGTCTATCCTAGGAAATTCCCCGTGGATCGTATACCTAT 4062 Query 29132 GCCCAACCTCTCGCATCTGTTGTACGGTTTCATACCTATTTGCGGCGGCGACGGGCTCAA 29191 || || || | ||| || | ||||| || || || ||||||||||| ||||| | || Sbjct 4061 ACCTAATCTTACTCATTTGCTCTACGGCTTTATTCCAATTTGCGGCGGTGACGGCATTAA 4002 Query 29192 CGACGCCCTCAAAACCATTCCCGGCAGTTTTGAGGCGCTGCAACGCTCTTGCAAGGGCCG 29251 || | ||| || |||||||| | || || || || || || | ||||| Sbjct 4001 TGATAGTTTAAAAGAGATCGAAGGCAGTTTCCAAGCACTACAGCGATCCTGTAGCGGCCG 3942 Query 29252 TTCAGATTTCAAAGTCGCTATTCACGATCCGTGGGCCGCGATACAAAAACCGCAAAAGGG 29311 | || ||||||||| | || |||||||| ||||| || |||||||||| ||||| || Sbjct 3941 TGAGGACTTCAAAGTCTCAATCCACGATCCATGGGCAGCATTACAAAAACCACAAAAAGG 3882 Query 29312 CGTGTCTGCGTGGAACGAGCCCTACAAAGGAAACTTCGGTCAGCTAATGGCGGCCAAGCT 29371 ||||| | |||||||||||||||||||| ||||| || || ||||| | || | Sbjct 3881 ATTGTCTTCATGGAACGAGCCCTACAAAGGCAACTTTGGCCAATTAATGTCACTAAAACA 3822 Query 29372 GGCCAATCCGCACCTCAAAATTCTGCCGTCCATCGGCGGCTGGACATTGTCCGACCC--- 29428 ||| || | | || ||||| || || || || || ||||| | |||| || Sbjct 3821 AGCCCGCCCTGAATTGAAGATTCTTCCCTCTATTGGTGGGTGGACGCTTGCCGATCCTTT 3762 Query 29429 GTTCTATTTCATGCACGACGCGGAAAAACGGCGTGTGTTTGTGGACTCGGTCAGAGAATT 29488 |||| ||| | || | | | | | || |||||| | || || | || || Sbjct 3761 CTTCTTTTTAGTTGACAAATCTAAGAGAACACG---ATTTGTGCAGTCAGTAAAGGAGTT 3705 Query 29489 TCTGCAGGTGTGGAAGTTTTTTGACGGCGTGGACATAGACTGGGAGTTTCCGGGTGGCAA 29548 ||| | ||||| || || || || || || || || |||||||| || |||||||| Sbjct 3704 TCTTCTAACATGGAAATTCTTCGATGGTGTTGATATCGATTGGGAGTTCCCTGGTGGCAA 3645 Query 29549 AGGCGCCAACCC 29560 ||| || ||||| Sbjct 3644 AGGTGCTAACCC 3633 >seq27511 Length=800 Score = 107 bits (118), Expect = 2e-18 Identities = 152/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGG 107614 ||||||||||||||| || || | || |||||||| || || | ||| ||| ||| Sbjct 216 AATGCAAATTTTTGTAAAGACACTGACTGGCAAAACTATCACTTTGGAAGTGGAAGCTTC 275 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||||| | | | || || ||||||| || ||||||||| | || || || Sbjct 276 TGATACAATAGAAAATGTTAAGGCAAAGATTCAAGACAAAGAAGGCATTCCTCCTGACCA 335 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 ||||| ||||||| ||| || ||||||||||| || | ||| || | || || || Sbjct 336 ACAGAGGCTTATTTTTGCAGGAAAACAGCTGGAAGATGGACGTACATTGTCAGATTATAA 395 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTG 107768 ||||| ||||| ||||| |||||| ||||| || Sbjct 396 TATTCAGAAGGAATCTACTTTGCACTTGGTGCTG 429 Score = 100 bits (110), Expect = 2e-16 Identities = 174/252 (69%), Gaps = 12/252 (5%) Strand=Plus/Plus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGG 107614 ||||||||||||||| || || | || ||||| || || || | ||| ||| ||| Sbjct 444 AATGCAAATTTTTGTAAAGACACTGACTGGCAAGACTATCACTTTGGAAGTGGAAGCTTC 503 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||||| | | | || || || ||| |||||||| || | ||| ||||| Sbjct 504 TGATACAATTGAAAATGTTAAGGCGAAAATTCAGGATAAAGAGGGTATTCCCCCAGATCA 563 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGA----GGACGCCAAAACAATGGCGGACT 107730 ||| |||||||||| ||| || || ||||| || |||||| ||| | | |||| Sbjct 564 GCAAAGACTTATTTTTGCTGGAAAGCAGCTTGAAGATGGACGC----ACACTATCTGACT 619 Query 107731 ACAACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAAATAATA 107790 |||| ||||| ||||| || || |||||| |||| || | || |||| || ||| Sbjct 620 ACAATATTCAGAAGGAATCAACTTTGCACCTGGTACTGCGGCTGAGAGGTGG----AATG 675 Query 107791 AAAATATTTGTA 107802 ||||||||||| Sbjct 676 CAAATATTTGTA 687 >seq133356 Length=434 Score = 104 bits (114), Expect = 2e-17 Identities = 102/132 (77%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 103568 AACGGGTTCTTCTACTTGGGCCGCGGCGACGAAGTGCGCTGCGCGTTTTGCAAAGTGGAG 103627 || || |||| || ||||||||||||| ||||| |||||||||||||| ||||| || Sbjct 224 AATGGCTTCTATTATCTGGGCCGCGGCGATGAAGTACGCTGCGCGTTTTGTAAAGTAGAA 165 Query 103628 ATTATGCGCTGGGAGGAGGGCGACGACCCGGCTCGCGATCATCAGAGGTGGGCGCCGCAG 103687 |||||| |||| | ||||||||| || || || || ||| | |||||||| ||| Sbjct 164 ATTATGAAATGGGTTGCGGGCGACGATCCCGCCAAGGACCACCAGCGCTGGGCGCCTCAG 105 Query 103688 TGTCCGTTCCTG 103699 || || |||||| Sbjct 104 TGCCCTTTCCTG 93 >seq76306 Length=316 Score = 100 bits (110), Expect = 2e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 |||||||| || || ||||||||||| || |||||||| || | ||| ||| ||| Sbjct 57 ATGCAAATCTTCGTAAAAACTTTAACTGGGAAAACCATCACATTGGAAGTGGAAGCTTCT 116 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 ||||| ||| | ||||| ||||||| || || |||||| | || ||||| Sbjct 117 GATACAATCGAAAACGTAAAGGCAAAGATTCAAGACAAGGAAGGCATTCCTCCAGATCAA 176 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 || ||||| |||| || || || || ||||| || | ||| || | ||||| || Sbjct 177 CAAAGACTGATTTTCGCCGGAAAGCAACTGGAAGATGGGCGCACATTGTCAGACTATAAT 236 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTG 107768 || || ||||| ||||| |||||| | || ||| Sbjct 237 ATCCAGAAGGAATCTACTTTGCACTTAGTTTTG 269 >seq41046 Length=7774 Score = 87.8 bits (96), Expect = 1e-12 Identities = 143/205 (70%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGG 107614 |||||||||||| ||||| || | || || |||||||||||| |||| |||||| Sbjct 7383 AATGCAAATTTTCGTCAAGACCCTTACGGGTAAAACCATTACCCTCGAGGTGGAGGCCTC 7324 Query 107615 CGATACTGTCGGCCAGGT-AAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATC 107673 |||||| | | | || |||| || || ||||| ||||| | || || | Sbjct 7323 TGATACTATAGAAAATGTTAAAAGCTAAAATCCAAGATAAGGAAGGTATTCCACCAGACC 7264 Query 107674 AGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACA 107733 |||| | | || | ||| |||||||| || || || | ||| || | ||||||| Sbjct 7263 AGCAACGTTTGATCTTTGCTGGTAAACAACTAGAAGATGGACGTACATTGTCTGACTACA 7204 Query 107734 ACATTCAAAAGGAGTCTACGTTGCA 107758 ||||||||||||| || || ||||| Sbjct 7203 ACATTCAAAAGGAATCCACATTGCA 7179 >seq28654 Length=3315 Score = 87.8 bits (96), Expect = 1e-12 Identities = 167/246 (68%), Gaps = 4/246 (2%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| |||||||| ||||| |||| || || ||||||||| | ||| ||| | Sbjct 1930 ATGCAGATTTTTGTTAAAACCCTAACTGGAAAGACCATTACCCTGGAAGTGGAACCCTCT 1871 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 |||||| | | | |||||| || || || ||||| ||| | || |||||| Sbjct 1870 GATACTATTGAAAATGTAAAAGCTAAAATCCAAGACAAAGAGGGCATCCCACCTGATCAG 1811 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | ||||| | ||| ||||| || |||| || | || | | ||||||||| Sbjct 1810 CAGCGTCTTATCTTTGCTGGTAAGCAATTGGAAGATGGTCGCACCCTCTCTGACTACAAC 1751 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAAATAATAAAAAT 107795 || |||||||||||||| | || | || || | ||||||| || || |||| Sbjct 1750 ATCCAAAAGGAGTCTACCCTTCATCTAGTACTGCGTCTGCGAGGTGG----TATGCAAAT 1695 Query 107796 ATTTGT 107801 |||||| Sbjct 1694 ATTTGT 1689 Score = 82.4 bits (90), Expect = 6e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGG 107614 |||||| || ||||| || ||| | ||||| |||||||| || | || ||| | Sbjct 2387 AATGCAGATCTTTGTTAAGACTCTTACAGGAAAAACCATCACTTTAGAGGTAGAGCCGTC 2328 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||| ||| ||| | || || |||||| || ||||| || | ||| ||||| Sbjct 2327 CGACACTATCGAAAATGTGAAGGCAAAGATCCAAGACAAAGAGGGTATTCCCCCAGATCA 2268 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 ||||| ||||||| ||| || ||||| ||||| || | | ||| | | || || || Sbjct 2267 ACAGAGGCTTATTTTTGCTGGAAAACAACTGGAAGATGGCCGTACATTATCTGATTATAA 2208 Query 107735 CATTCAAAAGGAGTCTAC 107752 ||||||||||| ||||| Sbjct 2207 TATTCAAAAGGAATCTAC 2190 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397529813364187