Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20pachinus_20[genbank_20GCA_5F900068735.1_202017-04-26] 277,083 sequences; 279,264,790 total letters Query= NC_023498.1 Length=62466 Score E Sequences producing significant alignments: (Bits) Value seq84152 502 1e-137 seq134864 205 4e-48 seq231474 197 5e-46 seq20617 91.5 6e-14 >seq84152 Length=5826 Score = 502 bits (556), Expect = 1e-137 Identities = 596/795 (75%), Gaps = 32/795 (4%) Strand=Plus/Plus Query 56135 GTCGACCTGTCGCACTCGCCGAAATGGCGTGAGCAGCTCGGCACCCTCGGCGGCGGTAAC 56194 |||||||| ||||||| ||| ||||||||||||||||| | ||||||||||| ||| Sbjct 4698 GTCGACCTCGGGCACTCGAAGAAGTGGCGTGAGCAGCTCGGGTCGCTCGGCGGCGGCAAC 4757 Query 56195 CATTTCATCGAGCTGTGCCTCGATCACCTTGACCGGGTGTGGCTGTTCCTGCACTCCGGT 56254 || |||||||||||||||||||| | || ||||||||| ||||||||||||||||| Sbjct 4758 CACTTCATCGAGCTGTGCCTCGACGAGTCCGATCGGGTGTGGATGTTCCTGCACTCCGGT 4817 Query 56255 TCGCGTGGCGTCGGCAACAAGATCGCCCAGCGGCATATCTCTGCGGCGCAGGGGTATTGC 56314 ||||| || ||||||||| |||||| ||||| || ||| | |||||| | | || Sbjct 4818 TCGCGGGGTGTCGGCAACCGGATCGCGCAGCGACACATCGCGATCGCGCAGAAGC-TGGC 4876 Query 56315 CAGGCGCAAGGGCTGCA-CGT---CCCGCACCGCGACCTCGCGTACCT--CGTCGAGGGC 56368 |||| ||| | || ||| |||| ||| |||||||||||||| |||| | | Sbjct 4877 CAGG---AAGTGGCACATCGTGCTCCCGAACCCGGACCTCGCGTACCTGCCGTCCGAGAC 4933 Query 56369 ACTGTCGAGTTCGACCGCTACCTCGTCGAGCTGCGGTGGGCGCAGCGGTTCGCGTACTAC 56428 | | ||| |||| |||||| || ||| |||||| |||||||||||| | | Sbjct 4934 GCCG--GAGCTCGAGGTGTACCTCCGGGATCTGGCGTGGGCACAGCGGTTCGCGCTCGAG 4991 Query 56429 AACCGCGCCGAGATGATGGACCGTTTCGCGCAGGCGTTCCGGCATTGGATCGGCGCCGAC 56488 |||||||| ||||||||||| || ||| |||||||||| ||| ||| | || |||| Sbjct 4992 AACCGCGCTGAGATGATGGATCGCTTCCGGCAGGCGTTCGCGCACTGGGTAGGTCACGAC 5051 Query 56489 GC---CCCGATCGACGAGCTGGTCGTCGAGACGATCAACACGCATCACAACTACAC--GC 56543 | |||| | |||||| | |||| ||||||||| || ||||||||||| | Sbjct 5052 GGTGACCCG---GCCGAGCTCGAGACCGAGCGGATCAACACCCACCACAACTACACCGTC 5108 Query 56544 AGAAGGAGCTGCACGGCGGCCGTGAGGTGTGGTTGACCCGCAAGGGTGCGATCGACGCGC 56603 || |||| ||||||||| || |||||| ||||||||||||||||||||||||||| Sbjct 5109 CGA--GAGCGACACGGCGGCAAGGACGTGTGGCTGACCCGCAAGGGTGCGATCGACGCGC 5166 Query 56604 ACGAGGGTGTGCGGGGCCTGATTCCCGGCAGCATGGGCACTTGCTCGTATGTCGTGACGG 56663 ||||||||||||||||| | || || ||| ||||| || | || || ||||||| | Sbjct 5167 ACGAGGGTGTGCGGGGCATCATCCCGGGCTCGATGGGGACGCGGTCCTACATCGTGACCG 5226 Query 56664 GCAAGGGCAATCCCGAGGCG--CTGCATTCTGCGCCGCACGGCGCCGGTCGCCGGTTCTC 56721 ||||||| | | | |||| ||| ||| |||||||||||||| || || |||||||| Sbjct 5227 GCAAGGG--ACACGGCGGCGGTCTGTGTTCGGCGCCGCACGGCGCGGGGCGTCGGTTCTC 5284 Query 56722 GCGCGCCAAGGCCCGAAAG---CTGTTCACGGTCGACGACCTCGCCGACCGTATGCAGGG 56778 || ||| ||||| ||| | || ||| | | ||| |||| | | ||| || Sbjct 5285 ACGGGCCGAGGCC---AAGCGTCGGTACACCGAGGCCGATCTCGAGGCCGCGATGACCGG 5341 Query 56779 CATCGAGTACCGGCACGGCGAGGCGTGGGTCGATGAGATTCCCGACGCCTACAAGCCGAT 56838 ||||||||||||||||| | || |||| |||| ||||| || | || |||||| || Sbjct 5342 GATCGAGTACCGGCACGGGGCGGAGTGGATCGACGAGATCCCGCAGGCGTACAAGAGCAT 5401 Query 56839 TGACGTCGTGATGGCCGACGCCGACAGCCTGGTGACGATCGACGCCGAGCTGCGCCAGGT 56898 ||||||||||||||||||||||| |||| ||| |||||||| | ||||| ||||| Sbjct 5402 CGACGTCGTGATGGCCGACGCCGAGCGCCTCGTGTCGATCGACCACACCCTGCGTCAGGT 5461 Query 56899 GCTCAACGTCAAGGG 56913 ||||||||| ||||| Sbjct 5462 GCTCAACGTGAAGGG 5476 Score = 140 bits (154), Expect = 1e-28 Identities = 156/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 55757 CTGATCAACTTCGCCAGCGAGGTTGACGACGAGACGCTCGCGCAGGCACAGCAGATCGCT 55816 ||| ||||||||||| |||| | ||||| ||||| ||| ||||| || ||| ||| Sbjct 4379 CTGCTCAACTTCGCCTCCGAGATCGACGAGAAGACGATCGACCAGGCCAAGGAGACCGCA 4438 Query 55817 GATCTGCCTTTCGTTCATCCGCACGTGGCGCTGATGCCCGACGCGCATTACGGCAAGGGC 55876 | ||||| ||||| || |||||||||||| ||||||| || ||||| ||||||||||| Sbjct 4439 GCGCTGCCCTTCGTGCACCCGCACGTGGCGTTGATGCCGGATGCGCACTACGGCAAGGGA 4498 Query 55877 TCAAGCGTCGGCACGGTGATCCCGACTGAGGGCNNNNNNNNNNNNNNCGCGGTGGGCGTC 55936 || ||||| || || |||||||| | | | |||||| || ||| Sbjct 4499 TCCGCGGTCGGTACCGTCATCCCGACGGTCGACGCCGTCATCCCGGCCGCGGTCGGGGTC 4558 Query 55937 GATATCGGTTGCGGCATGATCGCCGCGCGCACC 55969 || ||||| |||||||||||||||| || ||| Sbjct 4559 GACATCGGGTGCGGCATGATCGCCGTCCGGACC 4591 >seq134864 Length=649 Score = 205 bits (226), Expect = 4e-48 Identities = 431/633 (68%), Gaps = 26/633 (4%) Strand=Plus/Minus Query 56234 TGGCTGTTCCTGCACTCCGGTTCGCGTGGCGTCGGCAACAAGATCGCCCAGCGGCATATC 56293 ||| |||||||||||||||| || || || ||||||||| ||||||||||| || ||| Sbjct 615 TGGTTGTTCCTGCACTCCGGGTCCCGCGGTGTCGGCAACCGGATCGCCCAGCACCACATC 556 Query 56294 TCTGCGGCGCAGGGGT--ATTGCCAGGCGCAAGGGCTGCACGTCCCGCACCGCGACCTCG 56351 | || | | || || | || | ||| | | | | | ||||| |||| Sbjct 555 GGGGTTGCCCGGAAGTCGATGGT--GGACAACGGGATCGAGCTGGCAGATCGCGATCTCG 498 Query 56352 CGTACCTCGTCGAGGGCACTGTCGAGTTCGACCGCTACCTCGTCGAGCTGCGGTGGGCGC 56411 ||||||| || |||||||| | ||||||||| |||||| | |||||| ||||| | Sbjct 497 CGTACCTGGTGGAGGGCACCGAGGAGTTCGACGCCTACCTGGCCGAGCTCACCTGGGCAC 438 Query 56412 AGCGGTTCGC-GTACTACAACCGCGCCGAGATGATGGACCGTTTCGCGCAGGCGTTCCGG 56470 ||| |||||| | ||| |||||||| |||||||||||| ||| ||| || | | | | | Sbjct 437 AGCAGTTCGCCGCACT-CAACCGCGACGAGATGATGGAGCGTGTCGTGCGGTCACTGCAG 379 Query 56471 CATTGGATCGGCGCCGACGCCCCGATCGACGAGCTGGTCGTCGAGACGATCAACACGCAT 56530 ||||||||||| || | ||| || || |||| || | || Sbjct 378 TTCTGGATCGGCGCGGAGGTG---------GAGGTG-TC--CGAGGACCTCGGCTGCCAC 331 Query 56531 CACAACTACACGCAGAAGGAGCTGCACGGCGGCCGTGAGGTG---TGGTTGACCCGCAAG 56587 |||||||||||| ||| |||| ||| |||| || ||| || |||||||| Sbjct 330 CACAACTACACGGCCCGCGAGACGCACCACGG---TGAGCTGCTGTGGGTGTCCCGCAAG 274 Query 56588 GGTGCGATCGACGCGCACGAGGGTGTGCGGGGCCTGATTCCCGGCAGCATGGGCACTTGC 56647 ||||| ||| |||| | | || || | || ||||| || || ||||| || Sbjct 273 GGTGCCATCAACGCCGAGGTCGGCGTCCCCGGGCTGATCCCGGGGTCGATGGGTACGGCG 214 Query 56648 TCGTATGTCGTGACGGGCAAGGGCAATCCCGAGGCGCTGCATTCTGCGCCGCACGGCGCC 56707 ||||| |||||| | |||| ||| || || | ||| ||| |||||||| || Sbjct 213 TCGTACGTCGTGTCCGGCAGGGGGAACGAGCAGTCCCTGTGCAGTGCACCGCACGGAGCA 154 Query 56708 GGTCGCCGGTTCTCGCGCGCCAAGGCCCGAAAGCTGTTCACGGTCGACGACCTCGCCGAC 56767 || || | |||||| | ||||| || ||| ||||||||||||||||| || | | Sbjct 153 GGCCGGGCCTACTCGCGGACGAAGGCGCGCAAGACCTTCACGGTCGACGACCT-GCGGGC 95 Query 56768 CGT-ATGCAGGGCATCGAGTACCGGCACGGCGAGGCGTGGGTCGATGAGATTCCCGACGC 56826 | ||| || ||||||||||| || ||||||| ||||| ||||| |||| ||| Sbjct 94 GGCGATGGTCGGGATCGAGTACCGCGACACGGAGGCGTTCGTCGACGAGATCCCCGGCGC 35 Query 56827 CTACAAGCCGATTGACGTCGTGATGGCCGACGC 56859 ||||||| || ||| ||||||||||| || Sbjct 34 CTACAAGGACATCGACCAGGTGATGGCCGATGC 2 >seq231474 Length=516 Score = 197 bits (218), Expect = 5e-46 Identities = 347/493 (70%), Gaps = 22/493 (4%) Strand=Plus/Plus Query 56225 GACCGGGTGTGGCTGTTCCTGCACTCCGGTTCGCGTGGCGTCGGCAACAAGATCGCCCAG 56284 ||||| || |||||||||||||||||||| || || |||||||||||||||||||||||| Sbjct 7 GACCGCGTCTGGCTGTTCCTGCACTCCGGCTCCCGCGGCGTCGGCAACAAGATCGCCCAG 66 Query 56285 CGGCATATCTCTGCGGCGCAGGGGTAT-TGCCAGGCGCAAG-GGCTGCACGTCCCGCACC 56342 | || ||| | ||| || | | |||| | ||| | || | || | || ||| Sbjct 67 CACCACATCAAGGTCGCG-AGCGACCTGTGCC-GACGCTGGTGGATCGACCTGCCCGACC 124 Query 56343 GCGACCTCGCGTACCTCGTCGAGGGCACTGTCGAGTTCGACCGCTACCTCGTCGAGCTGC 56402 ||||||||| ||||| || ||||| | | |||| |||| || |||| ||| Sbjct 125 CCGACCTCGCCTACCTGGTGGAGGGGGACGACACGTTCTGGGCCTACATCCGCGAGATGC 184 Query 56403 GGTGGGCGCAGCGGTTCGCG-TACTACAACCGCGCCGAGATGATGGACCGTTTCGCGCAG 56461 ||||||| |||| ||||| | || |||||||| ||||||||| |||| || | || Sbjct 185 GGTGGGCCCAGCACTTCGCCCTGCT-CAACCGCGAGGAGATGATGCACCGCGTCCAGGAG 243 Query 56462 G-CGTTCCGGCATTGGATCGGCGCCGACGCCCCGATCGACGAGCTGGTCGTCGAGACGAT 56520 | ||| ||| | | | ||||| ||| || || || | ||||||||| Sbjct 244 GTCGTCGCGG-ACGAGCTGGGCGC-GAC-----------CGTGCAGGCGGACGAGACGAT 290 Query 56521 CAACACGCATCACAACTACACGCAGAAGGAGCTGCACG-GCGGCCGTGAGGTGTGGTTGA 56579 |||| || ||||||||||| || |||| || | ||| || ||||||||| || Sbjct 291 CAACTGCCACCACAACTACACCGAGCGCGAGC-GCGTGTTCGGTCGCGAGGTGTGGGTGT 349 Query 56580 CCCGCAAGGGTGCGATCGACGCGCACGAGGGTGTGCGGGGCCTGATTCCCGGCAGCATGG 56639 |||||||||| |||||| ||| | |||||| || || ||||| |||||| |||| Sbjct 350 CCCGCAAGGGCGCGATCCGTGCGGGCAAGGGTGATCGCGGGCTGATCCCCGGCTCGATGG 409 Query 56640 GCACTTGCTCGTATGTCGTGACGGGCAAGGGCAATCCCGAGGCGCTGCATTCTGCGCCGC 56699 |||| ||||| ||||| |||||| |||| | || | ||||| || || |||| Sbjct 410 GCACGGCGTCGTACGTCGTCACGGGCCTGGGCTACCCGCCGTCGCTGATGTCGGCCCCGC 469 Query 56700 ACGGCGCCGGTCG 56712 |||| ||||| || Sbjct 470 ACGGGGCCGGCCG 482 >seq20617 Length=36039 Score = 91.5 bits (100), Expect = 6e-14 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 39294 GATCGAGTGCATTGACATTACGCAGCACATGGGGTTCTGCCTCGGCAATGCCACCAAGTA 39353 |||||||||||| || || || |||||||| |||||| | ||||| || | ||||| Sbjct 28195 GATCGAGTGCATCGAGATCACCAAGCACATGAACTTCTGCTTGGGCAACGCGATGAAGTA 28136 Query 39354 CGTGTGGCGCTGCGACCTCAAGCACGACGCAATCGAGGACTTGCGCAAGGCAATTCAGTA 39413 | | |||||| | |||||| |||| | ||||| |||||||||| | ||||| Sbjct 28135 CATCTGGCGCGCTGGGCTCAAGGGCGACAGTGTGGAGGATCTGCGCAAGGCCAAGCAGTA 28076 Query 39414 CATCGAGTTTGAAATCGCCCGGC 39436 |||||| || || |||| ||||| Sbjct 28075 CATCGACTTCGAGATCGACCGGC 28053 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 199091799042801