Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20pachinus_20[genbank_20GCA_5F900068735.1_202017-04-26] 277,083 sequences; 279,264,790 total letters Query= NC_023552.1 Length=47162 Score E Sequences producing significant alignments: (Bits) Value seq249899 118 3e-22 seq184310 87.8 5e-13 >seq249899 Length=916 Score = 118 bits (130), Expect = 3e-22 Identities = 106/133 (80%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 3017 CGAGTACCACGATCACCAGATGGCGCTTGTCGCGCTGGCGCACTTCTTGAACCTCGACGG 3076 |||| |||||| | ||| ||| ||| || | |||| || | | ||||||||||| Sbjct 156 CGAGGGCCACGACAAGGCGATTGCGATTGCCGGGTTGGCCAACCACCTCAACCTCGACGG 97 Query 3077 CAAGGGCGGCAGCTACGCGCTGGCCAGCGTGCAGGCTGACACGTTCGTGCAGTCGGTGCA 3136 |||||||||||| ||||| ||||||||||||||| | || |||||||||||||| | ||| Sbjct 96 CAAGGGCGGCAGTTACGCCCTGGCCAGCGTGCAGTCCGATACGTTCGTGCAGTCCGAGCA 37 Query 3137 GACCGTCGCCGAC 3149 ||||| |||||| Sbjct 36 GACCGAGGCCGAC 24 >seq184310 Length=1059 Score = 87.8 bits (96), Expect = 5e-13 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 3151 AGATCCGCGACGTCGCGCAGGCGCACGTCGTCGAGGACATTGTGGACGTCAACTGGGGCG 3210 ||||| ||||| |||| | |||| | ||||||||| | || ||| |||||||| Sbjct 917 AGATCTGCGACATCGCCAACCAGCACATAGTCGAGGACCTCGTTGACTGGAACTGGGGAC 976 Query 3211 AGGACGAGCCCGCGCCGTTGCTGGTGTTCGACGAGATCGGTTCGCGCCAGGACGCG 3266 ||||||| || ||| ||||||||||||||||||||||||||| || | |||| Sbjct 977 CCGACGAGCAGGCACCGCTGCTGGTGTTCGACGAGATCGGTTCGCAGCACGCCGCG 1032 Score = 82.4 bits (90), Expect = 2e-11 Identities = 143/201 (71%), Gaps = 13/201 (6%) Strand=Plus/Plus Query 2259 CGCGAGGAGGCGCGCATCGCGTCGGTGCTGCGGGCGATCGGGCTGCCGATTCGCCGGACC 2318 |||||||| || | || | ||||| ||| ||| | ||||||||| || || ||| Sbjct 61 CGCGAGGACGCCCAGGTCACCTCGGTCCTGACCGCGGTGCAGCTGCCGATCCGGCGCACC 120 Query 2319 GACTGGCGGATC-CGCCCGAACGGCGCGCAGCCCGAGGTCGTCGAGCACGTCGCCGCCTG 2377 | |||||| | ||| | |||||||| | || |||||||||| || |||||| || || Sbjct 121 CAGTGGCGGGTGTCGCGC-AACGGCGCTCGCCCGGAGGTCGTCGCGCTCGTCGC-GCGTG 178 Query 2378 C-CTCGGTCTGCCGGTCGAGGGCGAGGACGCCGATCA-GCCGA--CTCCGCGC------A 2427 || ||||||| ||||||||||| ||| || | ||||| | |||||| | Sbjct 179 ATCTGAATCTGCCGATCGAGGGCGAGTCCGCGGAGGAGGCCGACGCGCCGCGCGGCCGGA 238 Query 2428 CGCGAGGGCGGTTCTCGTGGG 2448 | || || || |||||||||| Sbjct 239 CCCGTGGCCGATTCTCGTGGG 259 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 150300624146904