Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heliconius_20pachinus_20[genbank_20GCA_5F900068735.1_202017-04-26]
277,083 sequences; 279,264,790 total letters
Query= NC_023588.1
Length=33525
Score E
Sequences producing significant alignments: (Bits) Value
seq253728 165 2e-36
seq268213 154 3e-33
seq56468 104 5e-18
seq125599 89.7 1e-13
seq276449 87.8 4e-13
>seq253728
Length=404
Score = 165 bits (182), Expect = 2e-36
Identities = 234/320 (73%), Gaps = 8/320 (3%)
Strand=Plus/Minus
Query 3595 TCACGATCTGGCGCCAGATCGCGTCCTCGCAACG-CCG-GCCACCCATCAGGCGC-GCGT 3651
||||||| |||||||| ||| ||| || || ||| ||| || ||| ||| || |
Sbjct 381 TCACGATGTGGCGCCAAATCCGGTCGGGGC--CGACCGCGCCGTCCGCCAG-CGCTGCAT 325
Query 3652 GGCTCACATCCAGCTGGATCTGCTGGGACACCGAGCGTCCCTTGTTGAAGCGCTCGCCGG 3711
||||||| ||||||| || | | | | || | | |||| ||||||||||
Sbjct 324 GGCTCACGTCCAGCTCGACGCGATCTTCCTTCTTTCGGCGCCGGTTGCGCCGCTCGCCGG 265
Query 3712 TCCAGAAGTCGA-AGGCTTCATGCGCCATGGTGGACGGCGTGCTGAAGTAGGTCTTGCGC 3770
||||| | | || |||| ||| || ||| || ||||| |||||||| || |||
Sbjct 264 TCCAGTA-TGGATAGGCGGGGTGCAGCACGGTCGATGGCGTCGAAAAGTAGGTTTTTCGC 206
Query 3771 CACTTCTTGTGCATCGCCATGCCGCTGGCGACCTTGTTCAGCTGGTTGAAACCGTAGGTC 3830
|||||||||||| ||||||| || ||||||||||||||||| | ||| | || |
Sbjct 205 CACTTCTTGTGCGTCGCCATCCCCGAGGCGACCTTGTTCAGCTCCTCGAAGCTGTGAACC 146
Query 3831 CAGAAGAACTCGTCAAAGTAGAAATTGCCGTGGTAGCCCTGTGCGGTGCGGGCGTTGGTG 3890
|||||||||||||| ||||||||||||||||| ||||| |||||||| ||| |||
Sbjct 145 CAGAAGAACTCGTCGAAGTAGAAATTGCCGTGCCGCCCCTGCGCGGTGCGAAAGTTCGTG 86
Query 3891 CCCAGGAAGAACAGCTCGGC 3910
|| |||||| |||||||||
Sbjct 85 CCGAGGAAGTGCAGCTCGGC 66
>seq268213
Length=253
Score = 154 bits (170), Expect = 3e-33
Identities = 138/172 (80%), Gaps = 7/172 (4%)
Strand=Plus/Minus
Query 3776 CTTGTGCATCGCCATGCCGCTGGCGACCTTGTTCAGCTGGTTGAAACCGTAGGTCCAGAA 3835
||||||||||||||| |||||||||||||||| || | | ||| ||||||||||||||
Sbjct 228 CTTGTGCATCGCCATCGCGCTGGCGACCTTGTTGAGTTCCTCGAACCCGTAGGTCCAGAA 169
Query 3836 GAACTCGTCAAAGTAGAAATTGCCGTGGTAGCCCTGTGCGGTGCGGGCGTTGGTGCCCAG 3895
|||||||| || |||||||||||||| |||||||| |||||||| || ||||| || ||
Sbjct 168 AAACTCGTCGAAATAGAAATTGCCGTGATAGCCCTGCGCGGTGCGCGCATTGGTCCCGAG 109
Query 3896 GAAGAACAGCTCGGCGCCATTGG-----CCAGGGTGATCGGGTCGCCGGTCA 3942
||| | |||||| ||| ||| || || ||||| |||| ||||||
Sbjct 108 GAAAATCAGCTC--AGCCGCTGGTTCACCCTTGGGGATCGTGTCGGCGGTCA 59
>seq56468
Length=1893
Score = 104 bits (114), Expect = 5e-18
Identities = 130/176 (74%), Gaps = 2/176 (1%)
Strand=Plus/Minus
Query 6007 CGAGTTCCAGACCCTGATCCGCGACGCGATCATCCAGCGCCA-GGCACTGGACCGGATCA 6065
||| |||||||||||| | ||||| ||||||||| ||||||| ||| | ||| ||||
Sbjct 805 CGATTTCCAGACCCTGCTGCGCGATGCGATCATC-AGCGCCAAGGCCGTCGACATCATCA 747
Query 6066 TGATCGGCTGGCACGGCACCAGCATTGCCATCAACACCGACCGCGTCGCCAATCCGATGC 6125
|||||||| ||||| | | |||| | ||| ||| |||||| ||||| | |
Sbjct 746 CGATCGGCTTCAACGGCGTGAAGGTAGCCAAGGATACCTACCCGGTCGCCTATCCGCTCC 687
Query 6126 TGCAGGACGTGAACAAGGGCTGGCTGCAGAAGTACCGCGAGCATGCGCCCGAGCGC 6181
| |||||||| |||||||||||||| ||| | |||||| | || || || |||
Sbjct 686 TTCAGGACGTCAACAAGGGCTGGCTCCAGCACATCCGCGAAGACGCCCCGGAACGC 631
>seq125599
Length=907
Score = 89.7 bits (98), Expect = 1e-13
Identities = 341/512 (67%), Gaps = 35/512 (7%)
Strand=Plus/Plus
Query 3267 TGGCGTTCCAGCACGCGGAACTTGCCGCAGGGCACCAGCGGCGGGGCTA----CCACCAC 3322
|||||||| |||| ||||| ||||| | || |||||||| || | | || |
Sbjct 183 TGGCGTTCGAGCAGCCGGAAAGCGCCGCCCTGGACGAGCGGCGGTGCCATGATCGACAGC 242
Query 3323 GATGCC----CGC-GCTGTCGCCGGTCTCGGCCGGGTCGTAGCCGATCCACACAGCGCGG 3377
||||| ||| | | || | | ||| ||| ||||||||| |||||| | |||
Sbjct 243 GATGCATTATCGCCGTTCTCACTGTTCTG---CGGATCGTAGCCGGCCCACACGGGGCGC 299
Query 3378 TCGCCGTAGGGCCGGACGGCAAACGGCTTGTAGTCGTCCGCCCACTCGACCCAGCTATCG 3437
|||||||| || || |||| ||| ||| ||||| | ||| || || | |||
Sbjct 300 TCGCCGTACGGGCGTGCGGCCTCCGGATTGAAGTCG---GTCCAGTCCTCCATGGAGTCG 356
Query 3438 -ACCTGACAGGGCTGCAGCATCGT-GAGCGGGAATACGCTGGC--GCTGTCATCCACGAA 3493
| | | | | ||| |||| || | |||| ||| | | |||||| || |||||
Sbjct 357 CAGCCGCATTTGAT-CAGG-TCGTTGAACCGGAA--CGCGGACAGGCTGTCGTCGACGAA 412
Query 3494 CTCGCACATCAGCAGATTGGCGAATTCCTC-GGCGCTGTAGTCGCGGCGCAGTTCCTCGA 3552
||||| | |||||||| || || || ||||| || ||| |||||| || ||||
Sbjct 413 GTCGCAGTCGAATAGATTGGCAAACTCGTCTGGCGCA-TATTCGTCGCGCAGCTCGTCGA 471
Query 3553 TATCGAACAGGTCAC-AGCCACGGCCGGCCGCATCAAGAACGGTCACGATCTGGCGCCAG 3611
| ||||||||||| | | || ||||| | ||||| | || ||||| || ||||||
Sbjct 472 TGTCGAACAGGTCGCAACCCGCGGCC-TCGGCATCGGTGATCGTGACGATATGCCGCCAG 530
Query 3612 ATCGCG-TCC--TCGCAACGCCGGCCACCCATCAGGCGCG-CGTGGCTCACATCCAGCTG 3667
|| ||| ||| || | ||| ||| || ||| ||||| ||||||| ||||| | ||
Sbjct 531 AT-GCGATCCGGTCCCTGCGC--GCCGTCCTTCA-GCGCGTCGTGGCTGACATCGATCTC 586
Query 3668 GATCTGCTGGGACACCGAGCGTCCCTTGTTGAAGCGCTCGCCGGTCCAGAAGTCGAAGGC 3727
|| ||| || | ||| | | |||| ||||| || |||||| | ||||
Sbjct 587 GACGCGCTCGGCTTTGGCGCGCCGCCGGTTGCGCCGCTCACCCGTCCAGTACGGATAGGC 646
Query 3728 TTCATGCGCCATGGTGGACGGCGTGCTGAAGT 3759
||||||| || || |||||||| |||||
Sbjct 647 GGCATGCGCGATCGTCGACGGCGTCGAGAAGT 678
>seq276449
Length=276
Score = 87.8 bits (96), Expect = 4e-13
Identities = 162/232 (70%), Gaps = 18/232 (8%)
Strand=Plus/Plus
Query 27161 GAAGGCTTTGACCCCGCCAAGTCCACGAAGGCCGGCCGCGCCCGCGCCATGGGGCAGATT 27220
|| ||||| || || ||||| |||| |||||| ||| ||| ||||||||||| |
Sbjct 53 GAGGGCTTCGATCCAACCAAGGCCACCGGCGCCGGCATCGCGCGCACCATGGGGCAGGT- 111
Query 27221 TCCGGCA---TGCCCATTGTGCTGTTGGAAGCCGACCGCAGCGACAACGGGGACAAGGCG 27277
||||| | ||| | |||||| | || | ||| |||||| | ||| || |
Sbjct 112 --CGGCAATCTCCCCGTCGTGCTGATCGAGGGCGATCGCAGCAA------GGAAAACCCC 163
Query 27278 CACGCCAAATCGTTCGAGTGGGACGAACTGAAG---GACTACTACGGCGGCGGCACCCTC 27334
|||||||| ||||||||||||||| |||||| | || |||| ||| | || |
Sbjct 164 CACGCCAAGCGGTTCGAGTGGGACGAGCTGAAGACCGCGTATAACGGTCGCGCCGTCCGC 223
Query 27335 GCCACGCGCGGTGTGCGCAACGGCGGCAACGAAACCTACGAGCCGCCGTTCC 27386
|| |||||| | ||| || ||||||| ||||| | ||| ||||| ||||
Sbjct 224 ACC-CGCGCGAT-CGCG-AATGGCGGCATGGAAACGTTCGAACCGCCCTTCC 272
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 106805810220002
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |