Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20pachinus_20[genbank_20GCA_5F900068735.1_202017-04-26] 277,083 sequences; 279,264,790 total letters Query= NC_023588.1 Length=33525 Score E Sequences producing significant alignments: (Bits) Value seq253728 165 2e-36 seq268213 154 3e-33 seq56468 104 5e-18 seq125599 89.7 1e-13 seq276449 87.8 4e-13 >seq253728 Length=404 Score = 165 bits (182), Expect = 2e-36 Identities = 234/320 (73%), Gaps = 8/320 (3%) Strand=Plus/Minus Query 3595 TCACGATCTGGCGCCAGATCGCGTCCTCGCAACG-CCG-GCCACCCATCAGGCGC-GCGT 3651 ||||||| |||||||| ||| ||| || || ||| ||| || ||| ||| || | Sbjct 381 TCACGATGTGGCGCCAAATCCGGTCGGGGC--CGACCGCGCCGTCCGCCAG-CGCTGCAT 325 Query 3652 GGCTCACATCCAGCTGGATCTGCTGGGACACCGAGCGTCCCTTGTTGAAGCGCTCGCCGG 3711 ||||||| ||||||| || | | | | || | | |||| |||||||||| Sbjct 324 GGCTCACGTCCAGCTCGACGCGATCTTCCTTCTTTCGGCGCCGGTTGCGCCGCTCGCCGG 265 Query 3712 TCCAGAAGTCGA-AGGCTTCATGCGCCATGGTGGACGGCGTGCTGAAGTAGGTCTTGCGC 3770 ||||| | | || |||| ||| || ||| || ||||| |||||||| || ||| Sbjct 264 TCCAGTA-TGGATAGGCGGGGTGCAGCACGGTCGATGGCGTCGAAAAGTAGGTTTTTCGC 206 Query 3771 CACTTCTTGTGCATCGCCATGCCGCTGGCGACCTTGTTCAGCTGGTTGAAACCGTAGGTC 3830 |||||||||||| ||||||| || ||||||||||||||||| | ||| | || | Sbjct 205 CACTTCTTGTGCGTCGCCATCCCCGAGGCGACCTTGTTCAGCTCCTCGAAGCTGTGAACC 146 Query 3831 CAGAAGAACTCGTCAAAGTAGAAATTGCCGTGGTAGCCCTGTGCGGTGCGGGCGTTGGTG 3890 |||||||||||||| ||||||||||||||||| ||||| |||||||| ||| ||| Sbjct 145 CAGAAGAACTCGTCGAAGTAGAAATTGCCGTGCCGCCCCTGCGCGGTGCGAAAGTTCGTG 86 Query 3891 CCCAGGAAGAACAGCTCGGC 3910 || |||||| ||||||||| Sbjct 85 CCGAGGAAGTGCAGCTCGGC 66 >seq268213 Length=253 Score = 154 bits (170), Expect = 3e-33 Identities = 138/172 (80%), Gaps = 7/172 (4%) Strand=Plus/Minus Query 3776 CTTGTGCATCGCCATGCCGCTGGCGACCTTGTTCAGCTGGTTGAAACCGTAGGTCCAGAA 3835 ||||||||||||||| |||||||||||||||| || | | ||| |||||||||||||| Sbjct 228 CTTGTGCATCGCCATCGCGCTGGCGACCTTGTTGAGTTCCTCGAACCCGTAGGTCCAGAA 169 Query 3836 GAACTCGTCAAAGTAGAAATTGCCGTGGTAGCCCTGTGCGGTGCGGGCGTTGGTGCCCAG 3895 |||||||| || |||||||||||||| |||||||| |||||||| || ||||| || || Sbjct 168 AAACTCGTCGAAATAGAAATTGCCGTGATAGCCCTGCGCGGTGCGCGCATTGGTCCCGAG 109 Query 3896 GAAGAACAGCTCGGCGCCATTGG-----CCAGGGTGATCGGGTCGCCGGTCA 3942 ||| | |||||| ||| ||| || || ||||| |||| |||||| Sbjct 108 GAAAATCAGCTC--AGCCGCTGGTTCACCCTTGGGGATCGTGTCGGCGGTCA 59 >seq56468 Length=1893 Score = 104 bits (114), Expect = 5e-18 Identities = 130/176 (74%), Gaps = 2/176 (1%) Strand=Plus/Minus Query 6007 CGAGTTCCAGACCCTGATCCGCGACGCGATCATCCAGCGCCA-GGCACTGGACCGGATCA 6065 ||| |||||||||||| | ||||| ||||||||| ||||||| ||| | ||| |||| Sbjct 805 CGATTTCCAGACCCTGCTGCGCGATGCGATCATC-AGCGCCAAGGCCGTCGACATCATCA 747 Query 6066 TGATCGGCTGGCACGGCACCAGCATTGCCATCAACACCGACCGCGTCGCCAATCCGATGC 6125 |||||||| ||||| | | |||| | ||| ||| |||||| ||||| | | Sbjct 746 CGATCGGCTTCAACGGCGTGAAGGTAGCCAAGGATACCTACCCGGTCGCCTATCCGCTCC 687 Query 6126 TGCAGGACGTGAACAAGGGCTGGCTGCAGAAGTACCGCGAGCATGCGCCCGAGCGC 6181 | |||||||| |||||||||||||| ||| | |||||| | || || || ||| Sbjct 686 TTCAGGACGTCAACAAGGGCTGGCTCCAGCACATCCGCGAAGACGCCCCGGAACGC 631 >seq125599 Length=907 Score = 89.7 bits (98), Expect = 1e-13 Identities = 341/512 (67%), Gaps = 35/512 (7%) Strand=Plus/Plus Query 3267 TGGCGTTCCAGCACGCGGAACTTGCCGCAGGGCACCAGCGGCGGGGCTA----CCACCAC 3322 |||||||| |||| ||||| ||||| | || |||||||| || | | || | Sbjct 183 TGGCGTTCGAGCAGCCGGAAAGCGCCGCCCTGGACGAGCGGCGGTGCCATGATCGACAGC 242 Query 3323 GATGCC----CGC-GCTGTCGCCGGTCTCGGCCGGGTCGTAGCCGATCCACACAGCGCGG 3377 ||||| ||| | | || | | ||| ||| ||||||||| |||||| | ||| Sbjct 243 GATGCATTATCGCCGTTCTCACTGTTCTG---CGGATCGTAGCCGGCCCACACGGGGCGC 299 Query 3378 TCGCCGTAGGGCCGGACGGCAAACGGCTTGTAGTCGTCCGCCCACTCGACCCAGCTATCG 3437 |||||||| || || |||| ||| ||| ||||| | ||| || || | ||| Sbjct 300 TCGCCGTACGGGCGTGCGGCCTCCGGATTGAAGTCG---GTCCAGTCCTCCATGGAGTCG 356 Query 3438 -ACCTGACAGGGCTGCAGCATCGT-GAGCGGGAATACGCTGGC--GCTGTCATCCACGAA 3493 | | | | | ||| |||| || | |||| ||| | | |||||| || ||||| Sbjct 357 CAGCCGCATTTGAT-CAGG-TCGTTGAACCGGAA--CGCGGACAGGCTGTCGTCGACGAA 412 Query 3494 CTCGCACATCAGCAGATTGGCGAATTCCTC-GGCGCTGTAGTCGCGGCGCAGTTCCTCGA 3552 ||||| | |||||||| || || || ||||| || ||| |||||| || |||| Sbjct 413 GTCGCAGTCGAATAGATTGGCAAACTCGTCTGGCGCA-TATTCGTCGCGCAGCTCGTCGA 471 Query 3553 TATCGAACAGGTCAC-AGCCACGGCCGGCCGCATCAAGAACGGTCACGATCTGGCGCCAG 3611 | ||||||||||| | | || ||||| | ||||| | || ||||| || |||||| Sbjct 472 TGTCGAACAGGTCGCAACCCGCGGCC-TCGGCATCGGTGATCGTGACGATATGCCGCCAG 530 Query 3612 ATCGCG-TCC--TCGCAACGCCGGCCACCCATCAGGCGCG-CGTGGCTCACATCCAGCTG 3667 || ||| ||| || | ||| ||| || ||| ||||| ||||||| ||||| | || Sbjct 531 AT-GCGATCCGGTCCCTGCGC--GCCGTCCTTCA-GCGCGTCGTGGCTGACATCGATCTC 586 Query 3668 GATCTGCTGGGACACCGAGCGTCCCTTGTTGAAGCGCTCGCCGGTCCAGAAGTCGAAGGC 3727 || ||| || | ||| | | |||| ||||| || |||||| | |||| Sbjct 587 GACGCGCTCGGCTTTGGCGCGCCGCCGGTTGCGCCGCTCACCCGTCCAGTACGGATAGGC 646 Query 3728 TTCATGCGCCATGGTGGACGGCGTGCTGAAGT 3759 ||||||| || || |||||||| ||||| Sbjct 647 GGCATGCGCGATCGTCGACGGCGTCGAGAAGT 678 >seq276449 Length=276 Score = 87.8 bits (96), Expect = 4e-13 Identities = 162/232 (70%), Gaps = 18/232 (8%) Strand=Plus/Plus Query 27161 GAAGGCTTTGACCCCGCCAAGTCCACGAAGGCCGGCCGCGCCCGCGCCATGGGGCAGATT 27220 || ||||| || || ||||| |||| |||||| ||| ||| ||||||||||| | Sbjct 53 GAGGGCTTCGATCCAACCAAGGCCACCGGCGCCGGCATCGCGCGCACCATGGGGCAGGT- 111 Query 27221 TCCGGCA---TGCCCATTGTGCTGTTGGAAGCCGACCGCAGCGACAACGGGGACAAGGCG 27277 ||||| | ||| | |||||| | || | ||| |||||| | ||| || | Sbjct 112 --CGGCAATCTCCCCGTCGTGCTGATCGAGGGCGATCGCAGCAA------GGAAAACCCC 163 Query 27278 CACGCCAAATCGTTCGAGTGGGACGAACTGAAG---GACTACTACGGCGGCGGCACCCTC 27334 |||||||| ||||||||||||||| |||||| | || |||| ||| | || | Sbjct 164 CACGCCAAGCGGTTCGAGTGGGACGAGCTGAAGACCGCGTATAACGGTCGCGCCGTCCGC 223 Query 27335 GCCACGCGCGGTGTGCGCAACGGCGGCAACGAAACCTACGAGCCGCCGTTCC 27386 || |||||| | ||| || ||||||| ||||| | ||| ||||| |||| Sbjct 224 ACC-CGCGCGAT-CGCG-AATGGCGGCATGGAAACGTTCGAACCGCCCTTCC 272 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 106805810220002