Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20pachinus_20[genbank_20GCA_5F900068735.1_202017-04-26] 277,083 sequences; 279,264,790 total letters Query= NC_023602.1 Length=50781 Score E Sequences producing significant alignments: (Bits) Value seq153278 158 4e-34 seq148523 102 3e-17 seq180939 98.7 3e-16 seq46609 98.7 3e-16 >seq153278 Length=837 Score = 158 bits (174), Expect = 4e-34 Identities = 334/492 (68%), Gaps = 16/492 (3%) Strand=Plus/Plus Query 32714 CGGAACGGATCGAGCCGATCGATCGCGGAATGGCGGCGCGCGTCCGGGACCTTTGTGTAG 32773 |||||||| ||||| ||||||||| |||||||| |||||| ||||| ||||| Sbjct 87 CGGAACGGGTCGAGGGTGTCGATCGCGCTGTGGCGGCGGCGGTCCGGAACCTTGGTGTAC 146 Query 32774 ATCTGAGTCGTCGCGATCGA-GCGATGCCGCAGCAGCTCTTGCACGGTGCGCAGATCGGC 32832 | | || | | ||| || ||| || |||| |||||| ||||| || |||||||| || Sbjct 147 AGCGCGGTTGACTGGATTGACGCG-TGGCGCATCAGCTCCTGCACTGTCCGCAGATCCGC 205 Query 32833 GCCGTCGTCGAGCACGGTCGTCCCGAACCAATGCCGCAGGCTATGCGGCGTTCCGCGCGC 32892 || |||||||||| ||||| ||| |||| |||||||| || || || ||| | | Sbjct 206 ACCTTCGTCGAGCAGTGTCGTTCCGTACCAGTGCCGCAGCGAGTGTGGGGTGCCGGGGAC 265 Query 32893 GCCGGCGCGGCGCATCGCGTTCCCGATGATGTCGGAGACTCCCTTGCTGTGGACGTGATC 32952 || |||| ||||||||| ||||||||||||| ||| || ||||||| | Sbjct 266 ATCGACGCGCCGCATCGCGCGCCCGATGATGTCGCTGACGGATTTCGACCGGACGTGCTG 325 Query 32953 GCCGGG--CCGGCGACTGTTGGCCGGAAACCACCAACCACGACGCGGCATTGTGAGCGAC 33010 ||||| || ||| |||| || |||||||| || || ||||| || | | Sbjct 326 ACCGGGGCACGTCGA--GTTGCTGGGGAACCACCATCCGCGGGTGGGCATCGTCTCGGCC 383 Query 33011 ACGTCGACGAGTAACGGATGAAGCGG----AACCCAGT-TTTTCGAGCCACCTTTGCCGA 33065 |||||||||| | || || ||||| ||| || || | | || |||||| Sbjct 384 GCGTCGACGAGAAGTGGGTGCAGCGGGAGTGACCGCGTCTTGTTGTGC-----TTGCCGG 438 Query 33066 GCACGTATAGACGCGGGCCGGTGATGTCGATGTCTTCGCCCCGAACGCGCGCGATCTCTG 33125 ||| || ||| || | |||||||| ||||| || || | | | ||| Sbjct 439 TCACTCGCAGCGACGGTTTGGCGGGATCGATGTCCTCGCCGCGCACCTGGGACACGTCTC 498 Query 33126 ACACGCGTAGGCCGGCCAGCGCGGCGAGCAGAATCATCACGCGCGTTCGGTGATGCATAC 33185 ||| || || ||||| || || || || ||||||||||| || ||||| ||||| | Sbjct 499 CCACACGGAGACCGGCGAGGGCACACAGAAGGATCATCACGCGGGTCCGGTGGTGCATCC 558 Query 33186 GCGTTGACAGCA 33197 ||| || |||| Sbjct 559 GCGATGTGAGCA 570 >seq148523 Length=1916 Score = 102 bits (112), Expect = 3e-17 Identities = 77/91 (85%), Gaps = 0/91 (0%) Strand=Plus/Plus Query 44118 ATGAAGGCGCTCACCGTTCAGCAGCCCTGGGCGTGGTCGATCGTTCACGGCGGGAAGCTG 44177 ||||||||| | || || |||||||| ||||||||| ||||||| ||||||||||||||| Sbjct 1475 ATGAAGGCGTTGACGGTGCAGCAGCCGTGGGCGTGGGCGATCGTGCACGGCGGGAAGCTG 1534 Query 44178 ATCGAGAACGGGACGCAGCTCTGGACATATC 44208 ||||||||| | || ||| |||| | |||| Sbjct 1535 ATCGAGAACCGCACACAGAACTGGTCGTATC 1565 Score = 98.7 bits (108), Expect = 3e-16 Identities = 142/193 (74%), Gaps = 12/193 (6%) Strand=Plus/Plus Query 44346 GGCGCGATCCTCGGCGTTGTCGATCTGGTCGACTGCCACCCGGACGCCGGCTGCTGCAAG 44405 ||||| || |||| || ||||| || ||||| ||||| ||| |||| || ||| Sbjct 1656 GGCGCATTCGTCGGTGTCGTCGACCTCGTCGATGTGCACCCCGACACCGGGTGTTGCCGC 1715 Query 44406 CCGTGGGGCGAATCCGCGTACGTCGAGCACGGCGGACGGGAACGC--CGGCGGATCACTC 44463 |||||||| || || || |||| |||||||||||||| | ||| ||||| |||| | Sbjct 1716 CCGTGGGGTGAGTCGGCCTACGACGAGCACGGCGGACAGACCCGCAACGGCG--TCACCC 1773 Query 44464 ACCTGGTGCTCGAAAACCCGCG--ACCGCTGGCCGA-GCCGAT-TCGGTGCAAGGGCGCG 44519 |||| |||||||| |||| || ||| | |||| ||| || ||| || ||||||| Sbjct 1774 ACCTCGTGCTCGAGCACCCACGGAACCTC---CCGACGCCCATACCGGCGC-GGGGCGCG 1829 Query 44520 CTCGGACTGTGGA 44532 || || ||||||| Sbjct 1830 CTGGGTCTGTGGA 1842 >seq180939 Length=538 Score = 98.7 bits (108), Expect = 3e-16 Identities = 111/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 1142 GACGGCTTCCGGCTCTGGACTCATCCCGACGTCTGTCTGATCTGTCCGCGTCAGAACGGG 1201 |||| ||| | | |||||| || || || ||| ||||| ||||| |||||||| Sbjct 232 GACGAGTTCGGCCGCTGGACGCACCCGGAGTGCTGCTTGATCGTCCCGCGGCAGAACGGT 173 Query 1202 AAGACGGAGATCGTTCTTCTCCGGATCCTGTTCGGGTTGTTCGTGCTCGGCGAGAACATC 1261 ||| | ||| | | | || ||| ||||| |||| ||||||||| |||||||||||| Sbjct 172 AAGTCCGAGGTTCTGTTGCTGCGGTGCCTGTACGGGATGTTCGTGCGCGGCGAGAACATT 113 Query 1262 ATCTACTCGGCGCAGCGGTGGAAGACAGC 1290 | | | || ||||||||||||||||||| Sbjct 112 GTGTTCACGACGCAGCGGTGGAAGACAGC 84 >seq46609 Length=4533 Score = 98.7 bits (108), Expect = 3e-16 Identities = 315/470 (67%), Gaps = 29/470 (6%) Strand=Plus/Minus Query 6718 CGGTGTGTCCGCCGGCGACTTCGCGAACGATTTGAACGCGTTGGAAGCCGACGAGATCGT 6777 ||| ||| | |||||||| ||| ||| || ||||| | || | |||||||||| Sbjct 513 CGGCGTGACGGCCGGCGAGTTCAACCGCGAGGTGGACGCGCTCGACGTCGACGAGATCA- 455 Query 6778 CGTCGGGA--TCAACAGTCC--CGGCGGGATCGTGTTCGACGGGATCGCGATCATGAACG 6833 || | | | ||||| ||| |||||| || | ||| | |||||||| |||| Sbjct 454 CG-CTGTACGTCAAC--TCCGGCGGCGGCGGGGTCTCCGAGGCCATCGCGATGCGGAACC 398 Query 6834 CGCTGAAGCGGCATCCGGCGCGGATCGTCACC-CGGA--TCGACGGGCTCGCCGCGTCGG 6890 || | ||| || |||| | || ||| || | ||||||||||||||||||||| Sbjct 397 ACCTCATGCGCCACAAGGCGAAG---GTGACCGCGTACGTCGACGGGCTCGCCGCGTCGG 341 Query 6891 CCGCGTCGTTTATCGCGATGGCCGGCGACGAGAT--TCAGACGTCGAAGTATGCCGAGAT 6948 |||| ||||| ||| || || | ||||||| | ||| | || || | |||||||| Sbjct 340 CCGCCTCGTTCCTCGTGACGGGTGCCGACGAGGTCGTCA-TGGGCG-AGAACGCCGAGAT 283 Query 6949 GATGATTCACGAAGCGCGCGGCGTCGTGATGGGAACGGCCGACGACTTCAAAGAGATGCG 7008 |||||| ||||| |||| | | |||| ||||| | || | |||| || | | || Sbjct 282 GATGATCCACGACGCGCTCTCCATCGTCATGGGGAACGCTGGCGACCTC--CGCGCGGCC 225 Query 7009 G--GATCTGCT-GATCCGGCATAAC-GAATCGATCGCTTCGGTCTACGCCGATCGCGCCG 7064 | || ||| || |||| | | || ||||| ||| | ||||| | || | Sbjct 224 GCCGACGAGCTCGA--CGGCGTCTCGGACAACATCGCGTCGATGTACGCGAAGAAGGCGG 167 Query 7065 GCGGCGACGTCAAAGACTGGCTGAAGCTCATGCATAACGAGACCTGGTTCACGGCTGACG 7124 |||| || || ||||||| | || ||| ||||||||||| |||||| || | Sbjct 166 GCGGGGAGATCGCCGACTGGCGGGCCCTGATGATCGCCGAGACCTGGTACACGGCCGAGG 107 Query 7125 AGATGGTCTCGGCCGGTCTCGCGGATCGCGTCATCGAAGTCGACGACGAG 7174 || || |||||| ||||| ||||| ||| ||| |||||||||| Sbjct 106 AGGCCGTGGAGGCCGGCCTCGCCGATCGTGTCGGCGA---CGACGACGAG 60 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 161843319138578