Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20pachinus_20[genbank_20GCA_5F900068735.1_202017-04-26] 277,083 sequences; 279,264,790 total letters Query= NC_023730.1 Length=42594 Score E Sequences producing significant alignments: (Bits) Value seq153278 159 9e-35 seq189415 86.0 2e-12 >seq153278 Length=837 Score = 159 bits (176), Expect = 9e-35 Identities = 487/734 (66%), Gaps = 28/734 (4%) Strand=Plus/Plus Query 28123 ACGGGTCGAGTGAGGTGATCGCCTCGTGCAGTCGGCCCGCGGGCACTTTCGTATAGATCT 28182 |||||||||| | | |||||| ||| | |||| | || || || || || | | Sbjct 91 ACGGGTCGAGGGTGTCGATCGCGCTGTGGCGGCGGCGGTCCGGAACCTTGGTGTACAGCG 150 Query 28183 GGGTCGTCGCGATGGACTTGTGGCGCAGCAGCTCTTGCACGACGCGAATGTCTGCGCCGT 28242 ||| | | ||| ||| |||||||| |||||| ||||| || | || || || | Sbjct 151 CGGTTGACTGGATTGACGCGTGGCGCATCAGCTCCTGCACTGTCCGCAGATCCGCACCTT 210 Query 28243 TGTCGAGCAGCGTCGTGGCGTACCAGTGCCGCAGGCAATGCGGTGTGCCGCGCACGCCAG 28302 ||||||||| ||||| |||||||||||||||| | || || |||||| | || | Sbjct 211 CGTCGAGCAGTGTCGTTCCGTACCAGTGCCGCAGCGAGTGTGGGGTGCCGGGGACATCGA 270 Query 28303 CTCGCCGCATTGTGCGGCCGATGATGTCGGACACAGATTTCGACAGGATGTGCTCGCCCT 28362 | |||||||| | ||| |||||||||||| || ||||||||| ||| ||||| | || Sbjct 271 CGCGCCGCATCGCGCGCCCGATGATGTCGCTGACGGATTTCGACCGGACGTGCT-GACCG 329 Query 28363 CGTGACCGCG----CATCGGGAACCACCACCCGGCGGCCGGCATC-TCTGATGCCATCTC 28417 | || || | ||||||||||| ||| || |||||| ||| ||| || Sbjct 330 GGGCACGTCGAGTTGCTGGGGAACCACCATCCGCGGGTGGGCATCGTCT-CGGCCGCGTC 388 Query 28418 GATCAGCAGCGGGTGCAGTGGAACGAACTTCAGCCGTCTGCCCTTGCCTTTGACCCACAG 28477 || || || |||||||| || | || | | || |||||| | || | ||| Sbjct 389 GACGAGAAGTGGGTGCAGCGGGAGTGACCGCGTCTTGTTGTGCTTGCCGGTCACTCGCAG 448 Query 28478 C-ACGCGTGACGCCAGGTCGACGTCTTCGCCGCGAATCTTCGCGATCTCGTGGACTCGCA 28536 | ||| || || | |||| ||| |||||||| | || | | || || || | Sbjct 449 CGACG-GTTTGGCGGGATCGATGTCCTCGCCGCGCACCTGGGACACGTCTCCCACACGGA 507 Query 28537 GACCGGCCAACAGGGC---GAGCAGAATCATGCGCCGCGTC--GAGGTCCACATGCGGGC 28591 ||||||| ||||| || || ||||| || ||| | ||| ||| || | Sbjct 508 GACCGGC---GAGGGCACACAGAAGGATCATCACGCGGGTCCGGTGGT--GCATCCGCGA 562 Query 28592 CTGCAGCAACGTCGCCACGTCGGCGTCGCTGATCGGGCGCGGCTGACGGTCGGGCAGCCG 28651 |||| | | || || || ||| || || || || | |||||||| |||| Sbjct 563 TGTGAGCAGGATGGGCAGGTGAGCATCGGACATGGGCCGTGGTTCGCGGTCGGGTTGCCG 622 Query 28652 GGGCGCACCGACTTTCACCATCGGGTTGTCCTCACGCCGGTCGGTGA-GCTGCAGCCACT 28710 |||| ||| ||||||||||| ||||| ||| ||||| ||| ||||||||||| Sbjct 623 AAGCGCTGGGACCTTCACCATCGGATTGTCGAGACGTCGGTC-CTGACGCTGCAGCCACG 681 Query 28711 TGAACCA-GGCCGATAGGTAGCTCGTATAGGTATAAGCCGTCGAGTCCGACCACTCTTC- 28768 | ||||| |||| | || | |||||| || || ||||| | ||| || || Sbjct 682 TAAACCACTGCCG-CACATACGACTGATAGGTCACCGCGGTGGAGTCGGCCCAGTCGTCG 740 Query 28769 --GTGGTCTGCGATCCACCGCACGACGTCGGT-GGCGCGAATGCTGATCGGCTGCTCACC 28825 ||| | ||| |||||||| |||| |||| | || || || ||| |||||| | || Sbjct 741 CGGTGCTGTGCCATCCACCGAACGATGTCGATCGGTTCG-GCGCGGATGGGCTGCACCCC 799 Query 28826 GGTCTCGACGTGCA 28839 |||||||| || || Sbjct 800 GGTCTCGAGGTACA 813 >seq189415 Length=2896 Score = 86.0 bits (94), Expect = 2e-12 Identities = 111/152 (73%), Gaps = 10/152 (7%) Strand=Plus/Minus Query 32701 TGCACGCAGACCGACCCCGAGGTGTTCTATCCCGAGAAAGGCGAATCGGTTGAACCGGCG 32760 ||| |||||||||||||||||| ||||| |||||||| |||| ||| ||| ||| Sbjct 551 TGCGCGCAGACCGACCCCGAGGCGTTCTTCCCCGAGAAGGGCGGCTCG-----ACCCGCG 497 Query 32761 CG--CA---CCATCTGCGCGCGGTGCGATGTGCGGGCCAAGTGCCTAGAGGTCGCGCTCG 32815 | || ||||||| | | ||||| ||| ||| ||||||| ||| |||||| Sbjct 496 AGGCCAAGCGCATCTGCCAGGGCTGCGAGGTGAAGGCGGAGTGCCTCGAGTACGCGCTGC 437 Query 32816 CCAACGATGAAGCGTTCGGCATCTGGGGCGGT 32847 ||| || || |||||| |||||||||||| Sbjct 436 ACAAGGACGAGCGGTTCGGTATCTGGGGCGGT 405 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 135731121322376