Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20pachinus_20[genbank_20GCA_5F900068735.1_202017-04-26] 277,083 sequences; 279,264,790 total letters Query= NC_023738.1 Length=106327 Score E Sequences producing significant alignments: (Bits) Value seq68307 221 8e-53 seq24208 210 1e-49 seq101977 183 2e-41 seq219192 150 1e-31 seq216206 107 1e-18 seq50100 82.4 5e-11 >seq68307 Length=2902 Score = 221 bits (244), Expect = 8e-53 Identities = 264/358 (74%), Gaps = 3/358 (1%) Strand=Plus/Plus Query 94413 GACCGCGGCCTCGATCTCCCCATCGGAGACGAACGCGCCCTGTATCCGGATGGCGCTGCG 94472 |||| ||||| ||||||| | |||| || |||||||||||| |||||||||| || | Sbjct 1678 GACCACGGCCGAGATCTCCTCGTCGGTGATGAACGCGCCCTGCATCCGGATGGGGCGGTT 1737 Query 94473 CGCCCCCACCGGCAGGAATAACCCGTCACCCATTCCCATGAGCTGCTCGGCTCCGCCCTC 94532 ||| |||| ||| | ||| | ||||| ||||| || ||||||| ||| || || || Sbjct 1738 CGCGCCCATCGGGATGAAGAGTCCGTCGCCCATGCCGATGAGCTTCTCCGCGCCCGGCTG 1797 Query 94533 GTCCAGGATCACCCGGCTATCGGTGAGGGACGCTGTGGCGAACGACAGCCGCGAGGGCAC 94592 || ||||| || || ||||| || |||| || ||||||| |||||||| || || Sbjct 1798 ATCGAGGATGACGCGCGAGTCGGTCAGCGACGACGTCGCGAACGCGAGCCGCGACGGGAC 1857 Query 94593 GTTGCTCTTGATGAGGCCCGTCACCACATCCACGGAGGGCCGCTGCGTCGCCAGGACGAG 94652 |||| ||||||| ||||| || || || || || || || ||||| ||||| || || || Sbjct 1858 GTTGGTCTTGATCAGGCCGGTGACGACGTCGACCGACGGTCGCTGGGTCGCGAGCACCAG 1917 Query 94653 ATGAATGCCGGCCGCACGCGCCTTCTGCGCGATGCGGACAATGTTGGCCTCAACCTCTTT 94712 || || || ||||| || |||||||| | ||||||||| || | |||| || || Sbjct 1918 GTGGATACCCGCCGCGCGGGCCTTCTGGGTGATGCGGACGATCGCGTCCTCGACGTC--- 1974 Query 94713 CTTGTAGCCACCCATCATGAGGTCCGCGAGTTCATCCACCACTACCACGATGTAGGGG 94770 |||| | |||||||||||| ||||| || || || | ||| |||||||||| Sbjct 1975 CTTGGGCGCGGTCATCATGAGGTCGGCGAGCTCGTCGACGATGGCCAGGATGTAGGGG 2032 Score = 176 bits (194), Expect = 3e-39 Identities = 346/500 (69%), Gaps = 20/500 (4%) Strand=Plus/Plus Query 94897 AGGTGGGGGATACCGTTGTACGGGGTGAGCTCGACACAT-TTGGGGTCGATCATGATGAG 94955 || || ||||| || | |||||| || || ||||| ||| || |||||||| | ||| | Sbjct 2219 AGATGCGGGATGCCCTCGTACGGCGTCAGTTCGAC-CATCTTCGGGTCGATGAGGATCAT 2277 Query 94956 TTTGACCCGATCAGGGGTCGCCCGGTAGAGCAGCGAAACCAGCATTGAGTTGATGAAGCT 95015 ||| || |||||||||||| ||||| || |||| ||| ||||| | |||||| Sbjct 2278 CCGGACGTCGTCCGGGGTCGCCCGGGTCAGCAGTGACACCAACATCGAGTTCACGAAGCT 2337 Query 95016 GGACTTGCCCGATCCGGTCGCGCCAGCCACCAGCAGATGCGGCATCTTGGCCAGGTTCAG 95075 |||||||||||| ||||| | ||| || || ||||| || ||||||||||| ||||| Sbjct 2338 GGACTTGCCCGAACCGGTGGAGCCGGCGACGAGCAGGTGGGGCATCTTGGCGAGGTTGGC 2397 Query 95076 GGAGACGTCCTTACCCTCGACGTCCTTGCCCACTGCCACGGTCAACGGATGGTCATCCT- 95134 | |||| | |||||||| ||||||||||| | | | ||||||| || | |||| Sbjct 2398 GCTGACGAAATCACCCTCGATGTCCTTGCCCAGCCCGATGATCAACGGGTGCTGGTCCTT 2457 Query 95135 -CGGGAACGATGTG-CT---GCA-ACCGCACAGTCTGCCGTTC---CGGCCG-----GGG 95180 |||| | ||| || ||| || ||||| | | || ||| || ||| Sbjct 2458 ACGGGTGCTCGGTGACTTGAGCACGTCGGCCAGTCGGACCATCTCGCGGTCGCTGTTGGG 2517 Query 95181 GAGCTCGATTCCTACGGCTGTTTTCCCGGGGATGGGGGCAACCACCCGCACGCTCTCCGT 95240 | |||||| || ||||| | || || |||||||| || | || || ||| | || || Sbjct 2518 CACCTCGATACCCACGGCGGACTTGCCCGGGATGGGCGCGAGCAGACGAACGTTGTCGGT 2577 Query 95241 TGCGAGCGCGTAGGCCA-ACTGGGACTGCAGTTGTGCGACTTTCTGGATGCGCACACCCG 95299 || |||||||| | || || | || | || |||| || |||||||| Sbjct 2578 CGCCGCGGCGTAGGCGATGTTGCGAGCG-AGGGCGGTGATCTTCTCGACCTTCACACCCG 2636 Query 95300 GCCCCAGTGTGATCTCGTAGCGTGTGACGCTCGGTCCATCGGTGCGGCCGGTGACCTTGG 95359 | || || || ||||||||| || || ||||||| |||| |||||||||| || Sbjct 2637 GGCCGAGCTCGACCTCGTAGCGGGTCACCGTCGGTCCGCGGGTGAAGCCGGTGACCGCGG 2696 Query 95360 CCTCGATGTCGAACT-CTCG 95378 | ||||| | ||||| |||| Sbjct 2697 CGTCGATCTTGAACTGCTCG 2716 >seq24208 Length=1566 Score = 210 bits (232), Expect = 1e-49 Identities = 264/360 (73%), Gaps = 3/360 (1%) Strand=Plus/Plus Query 94411 TTGACCGCGGCCTCGATCTCCCCATCGGAGACGAACGCGCCCTGTATCCGGATGGCGCTG 94470 ||||| ||| | |||||||| | |||| || ||| |||||| | || | | || Sbjct 369 TTGACGACGGTCGCGATCTCCGCCTCGGTCACCCACGAGCCCTGCACGCGCGTCGGCTTG 428 Query 94471 CGCGCCCCCACCGGCAGGAATAACCCGTCACCCATTCCCATGAGCTGCTCGGCTCCGCCC 94530 | |||||||| ||| ||||| | |||||| ||| || | |||| |||||| || | Sbjct 429 CTCGCCCCCATCGGGAGGAACAGCCCGTCGCCCTGGCCGACCAGCTTCTCGGCGCCCGGC 488 Query 94531 TCGTCCAGGATCACCCGGCTATCGGTGAGGGACGCTGTGGCGAACGACAGCCGCGAGGGC 94590 | ||| ||||| |||||||| ||| |||| || |||||||| | || ||||| ||| Sbjct 489 TGGTCGAGGATGACCCGGCTGTCGCCGAGGCTCGACGTGGCGAAGGCGAGTCGCGACGGC 548 Query 94591 ACGTTGCTCTTGATGAGGCCCGTCACCACATCCACGGAGGGCCGCTGCGTCGCCAGGACG 94650 |||||| |||||| || ||||||||||||||||| || |||||||||||||| || ||| Sbjct 549 ACGTTGGCCTTGATCAGACCCGTCACCACATCCACCGACGGCCGCTGCGTCGCGAGCACG 608 Query 94651 AGATGAATGCCGGCCGCACGCGCCTTCTGCGCGATGCGGACAATGTTGGCCTCAACCTCT 94710 || || |||||||| || ||||| ||| | |||||| || || |||| || || Sbjct 609 AGGTGGATGCCGGCGGCGCGCGCGAGCTGGGTGATGCGCACGATCGACTCCTCGACGTC- 667 Query 94711 TTCTTGTAGCCACCCATCATGAGGTCCGCGAGTTCATCCACCACTACCACGATGTAGGGG 94770 | | || | ||||||| ||||| || || || || ||||| |||| || ||||||| Sbjct 668 -GCGCGGCGCGA-CCATCATCAGGTCGGCCAGCTCGTCGACCACGACCAGGAGGTAGGGG 725 Score = 104 bits (114), Expect = 2e-17 Identities = 96/122 (79%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 94984 AGCAGCGAAACCAGCATTGAGTTGATGAAGCTGGACTTGCCCGATCCGGTCGCGCCAGCC 95043 |||||||| | ||| |||||||||||||| |||||||| |||||||| | ||| || Sbjct 999 AGCAGCGAGGTGATCATCGAGTTGATGAAGCTCGACTTGCCGGATCCGGTGGAGCCGGCG 1058 Query 95044 ACCAGCAGATGCGGCATCTTGGCCAGGTTCAGGGAGACGTCCTTACCCTCGACGTCCTTG 95103 || ||||| ||||||||||| || |||||| | |||| ||||||||||||||| Sbjct 1059 ACGAGCAGGTGCGGCATCTTCGCGAGGTTCGCGACGACGAAGCCGCCCTCGACGTCCTTG 1118 Query 95104 CC 95105 || Sbjct 1119 CC 1120 >seq101977 Length=1174 Score = 183 bits (202), Expect = 2e-41 Identities = 344/500 (69%), Gaps = 23/500 (5%) Strand=Plus/Plus Query 94894 AGAAGGTGGGGGATACCGTTGTACGGGGTGAGCTCGACACAT-TTGGGGTCGATCATGAT 94952 || ||||| ||||| || | |||||| ||||||||||| ||| ||||||||||||| | Sbjct 436 AGCAGGTGCGGGATGCCCTCGTACGGCGTGAGCTCGAC-CATCTTGGGGTCGATCAGCAC 494 Query 94953 GAGTTTGACCCGATCAGGGGTCGCCCGGTAGAGCAGCGAAACCAGCATTGAGTTGATGAA 95012 | |||| | || | ||||| | |||||||| |||||||| ||||| | ||| Sbjct 495 CATCCGGACCTCGGCCGGCGAGGCCCGCTGCAGCAGCGAGACCAGCATCGAGTTCACGAA 554 Query 95013 GCTGGACTTGCCCGATCCGGTCGCGCCAGCCACCAGCAGATGCGGCATCTTGGCCAGGTT 95072 |||||||||||| || ||||| ||||| ||||||||||| ||||| ||||||||||||| Sbjct 555 GCTGGACTTGCCGGAACCGGTGGCGCCGGCCACCAGCAGGTGCGGGGTCTTGGCCAGGTT 614 Query 95073 CAGGGAGACGTCCTTACCCTCGACGTCCTTGCCCACTGCCACGGTCAACGGATGGTCATC 95132 || | |||| ||||||||||||||||| | | | |||||| || | || Sbjct 615 CATCGTGACGAAACCGCCCTCGACGTCCTTGCCGAGGCCGATCACCAACGGGTGCGCGTC 674 Query 95133 CT--CGGGAA--CG-----------ATGTGCTGCAACCGCACAGTCTGCCGTTCCGGCCG 95177 || |||| | || | || || || || ||| || || | Sbjct 675 CTTGCGGGCATCCGGAGCCGCCAGCACGTCACCCAGGCGGACCATCTCACGATCGGAGTT 734 Query 95178 GGGGAGCTCGATTCCTACGGCTGTTTTCCCGGGGATGGGGGCAACCACCCGCACGCTCTC 95237 ||| | |||||| || || || | || |||||||| || || | || || ||| | || Sbjct 735 GGGCACCTCGATGCCCACCGCCGACTTGCCGGGGATCGGCGCCAGCAGTCGGACGTTGTC 794 Query 95238 CGTTGCGAGCGCGTAGGCCAACT---GGGACTGCAGTTGTGCGACTTTCTGGATGCGCAC 95294 ||| |||| |||||||| | | ||| | || | || || |||| || ||| Sbjct 795 CGTCGCGACGGCGTAGGCGATGTTGCGGGTCAGC-GCGGT--GATCTTCTCGACCTTCAC 851 Query 95295 ACCCGGCCCCAGTGTGATCTCGTAGCGTGTGACGCTCGGTCCATCGGTGCGGCCGGTGAC 95354 ||||| || ||| || |||||| || |||||| |||| || |||| ||||||||| Sbjct 852 GCCCGGGCCGAGTTCGACCTCGTACCGGGTGACGGTCGGGCCCCGGGTGAAGCCGGTGAC 911 Query 95355 CTTGGCCTCGATGTCGAACT 95374 ||| |||| || ||||| Sbjct 912 GGCGGCGTCGACGTTGAACT 931 Score = 143 bits (158), Expect = 2e-29 Identities = 187/254 (74%), Gaps = 5/254 (2%) Strand=Plus/Plus Query 94518 CTCGGCTCCGCCCTCGTCCAGGATCACCCGGCTATCGGTGAGGGACGCTG-TGGCGAACG 94576 |||||| || || ||| ||||| || || || ||||| || || |||| ||||||| | Sbjct 3 CTCGGCGCCCGGCTGGTCGAGGATGACGCGACTGTCGGTCAGCGA-GCTGGTGGCGAAGG 61 Query 94577 ACAGCCGCGAGGGCACGTTGCTCTTGATGAGGCCCGTCACCACATCCACGGAGGGCCGCT 94636 |||| || |||||||||||| ||||||| || || || || || || ||||||||||| | Sbjct 62 ACAGTCGGGAGGGCACGTTGGTCTTGATCAGACCGGTGACGACGTCGACGGAGGGCCGTT 121 Query 94637 GCGTCGCCAGGACGAGATGAATGCCGGCCGCACGCGCCTTCTGCGCGATGCGGACAATGT 94696 | || || ||||| || || || ||||| || || |||||||| | ||| ||||| || Sbjct 122 GGGTGGCGAGGACCAGGTGGATCCCGGCGGCCCGGGCCTTCTGGGTGATCCGGACGATCG 181 Query 94697 TGGCCTCAACCTCTTTCTTGTAGCCACCCATCATGAGGTCCGCGAGTTCATCCACCACTA 94756 | |||| || || | | |||| |||||| ||||| ||||| || || | | Sbjct 182 CGTCCTCGACGTC--CCGCGGAGCC-GTCATCATCAGGTCGGCGAGCTCGTCGATGATCC 238 Query 94757 CCACGATGTAGGGG 94770 ||| |||||| ||| Sbjct 239 CCAGGATGTACGGG 252 >seq219192 Length=699 Score = 150 bits (166), Expect = 1e-31 Identities = 470/715 (66%), Gaps = 36/715 (5%) Strand=Plus/Plus Query 68892 GCAT-GAGACCGCGGCGGCGTCCGGCGCGGCCCACCTGCTGTCGTTCAACGGCACCGACA 68950 |||| ||| |||| ||||| ||||| | |||||||| |||||| |||||||||| Sbjct 6 GCATCGAGTCCGCAGCGGCCGGTGGCGCCGGACACCTGCTCTCGTTCCTCGGCACCGACT 65 Query 68951 CCCTCGTGGCGATGGACTTCATCGACCGCTACTAT---GGCGG-GCCATA-TATTGCCGG 69005 | | | || | |||||| ||||||| ||||| |||| | | | | || ||| Sbjct 66 CGATGCCGTCGCTCGACTTCGTCGACCGGTACTACCCGGGCGACGACGGACTCGTGGCGG 125 Query 69006 -GTCAGTTGCCGCAACCGAGCACTCAGTGATGTGTACCGGTATCGAGACCAACGGTGAGC 69064 | || | || ||||||||| |||||||| | | || | || |||| |||| Sbjct 126 CGAGCGTCCCGGCGACCGAGCACAGCGTGATGTGCGTCCG---CGGGGCCGACGGGGAGC 182 Query 69065 TGGAGACCTTCTCCCGCCTACTGGACCTGTACCCCACGGGCATCGTCTCGGTGGTGTCGG 69124 | ||||| ||| | | || ||| | ||||| ||||||||||| |||| ||| | Sbjct 183 TCGAGACGTTCGAGCAGATCCTCGACGTCTACCCGACGGGCATCGTGTCGGCGGTCAGCG 242 Query 69125 ACACCTTCGACCTGTGGCGGGTGCTCACCGAGTACCTCCCGGCGCTGAGGGGCAAGATCC 69184 || ||||||||||| ||| |||||||| |||||| ||| | || | |||| Sbjct 243 ACGGCTTCGACCTGTTCAAGGTCATCACCGAGACGCTCCCGCAGCTCAAGGACCGGATCA 302 Query 69185 TCGCCCGCGACGGCAAGCTGGTCATCCGGCCGGATTCCGGCGACCCGGAGAAGATCATCT 69244 || |||||||||||||| || ||||| ||||| || || ||||||| | ||| || Sbjct 303 CCGGGCGCGACGGCAAGCTCGTGATCCGCCCGGACTCGGGTGACCCGGTCGACATCGTCA 362 Query 69245 GCGGCGACCCGAATGGCGAGACCCGAGCCGAACGATACGGCGTCATTACACTGCTGGC-- 69302 |||| | | | |||| | | ||||| | || || || | || || Sbjct 363 CCGGCACCGTGCACGGCGTG---GGTGCCGATGCACTCGCCG-----ACCCGGCCCGCAG 414 Query 69303 CAACGAGTTTGGCTACACCGTTAACGACGCGGGCTACGCGGAGCTCAACCCCCACGTGGG 69362 | ||||| | | ||| || || | | || ||| || | || || Sbjct 415 CCACGAG---GAGAAGGGCGT---CGTCGAGCTCCTCGACGAGATCTTCGGCC-----GG 463 Query 69363 TGCCATTTACGGCGACTCCATCACGGTGGAGCGGGCCCGCGCCATCACCGAGAACCTGGC 69422 | || ||||||||| |||||| | || || || || |||| |||| ||| | Sbjct 464 CGTGATCTACGGCGACAGCATCACCCTCGACCGCGCTCGTCGCATCTACGAGCGCCTCGA 523 Query 69423 GAGCAAGGGTTTCGC-CTCGTCGAACATCGTCTTCGGCGTGGGCTCCTACACCTACCAGA 69481 | |||||| | | | || | |||||||| ||||| | ||||| |||||||||||| Sbjct 524 GGCCAAGGGCTACTCGAGCGAC-AACATCGTGCTCGGCATCGGCTCGTACACCTACCAGT 582 Query 69482 TGAACACCCGCGACACCCTCGGCTCCGCCATGAAGGCTACCTGGGCAGAGGTCAACGGCA 69541 | |||||||||| ||||||| |||| ||||||| || ||||| ||| ||||| Sbjct 583 ACATGACCCGCGACAACCTCGGCAGCGCCGTGAAGGCGACGTGGGCGCTGGTGGACGGCG 642 Query 69542 AGGGCGTGAACCTTCTGAAAGACCCGGTCACCGACGACGGGACGAAGAAGAGCGC 69596 || ||| || | | ||| |||||| || | | ||| ||||||||||| Sbjct 643 AGTCCGTCGACATCCAGAAGGACCCGAAGACGGGCAGCGG---CAAGAAGAGCGC 694 >seq216206 Length=797 Score = 107 bits (118), Expect = 1e-18 Identities = 351/535 (66%), Gaps = 29/535 (5%) Strand=Plus/Plus Query 96260 GTCGAGCTTGGGAAAATCCGGCTCGCGGATCTCGTCAGGCCACCGCAGCGTCTGCAACGT 96319 ||||||| || || || | |||||| | |||||| ||| |||||||||||| | Sbjct 4 GTCGAGCCCCGGGAACTCGGCCTCGCGCACCTCGTCGTCCCAGAGCAGCGTCTGCAGCAG 63 Query 96320 CAGAACCTCATTCTTGCCCGTCACACGCAACACTGCCAG--GTGTTCCTTGCTCCGCAGG 96377 ||| ||||| | | ||| || |||| | | ||||| | || | |||| ||||| Sbjct 64 CAGCACCTCGT-CGTGC-----ACTCGCAGCGCCGCCAGCCGGGTGCGTTGC--CGCAGC 115 Query 96378 GTTACCCGTACGATGGCGACCTTG---TCGGCGTCAGAGAGCGTCCTAGCCAGCAGAGCG 96434 | | || ||||| || | || |||| || ||||| | |||||| ||| Sbjct 116 GAGATGCGCACGATCGC---CGTGCGCTCGGTCTCCTCCAGCGTGCGGCGCAGCAGCGCG 172 Query 96435 TACGGCCGCACCGATCCC---TCTGCGTTCAGGTAGTAGGGTTTGTCGAGCAGGATCGGG 96491 |||| | || ||| | || | ||||||||| |||||| |||||| Sbjct 173 TACGCCTTCATCGAGCTGGAATCCGGCGCCAGGTAGTAACTGCGGTCGAGGCGGATCGCA 232 Query 96492 TCGACCTCCCCGGCCGGCACGAACTCCACGACGTCAATCACCTTGTTGGTTTCGCTGGGC 96551 || |||| | | | ||||||||||| |||||||| || | | || ||| ||| Sbjct 233 TCCACCTGCTCCGAGGGCACGAACTCGACGACGTCGATGTCGCGGCTGCGCTCGGCCGGC 292 Query 96552 AGCTCCGCCAAGTCCTCATTGGTCAGTAGGGCGGTTTGCCCGTCGACCTCGAACACCTTG 96611 ||| ||||| || || ||| | || | | | || | || || | ||| | ||||| Sbjct 293 AGCGACGCCAGATCGTCCTTGCTGAGCACGACCGTGCGGTCGCCGTCGTCGTAGGCCTTG 352 Query 96612 CCCAGATCGGC-CGTGTGG-ACCTGCTCACCACACGTCTCACAGACCTTG---TGGTAGC 96666 | ||| || || || || ||| || || |||| || |||| ||||||| Sbjct 353 TC--GATGTGCTCGAAGGGCACGACCTCGCCGCAGATCTCGCA---CTTGCGCTGGTAGC 407 Query 96667 GAATCCGCCCGCCGTCCTGGACGTGCGCCAGATGGCCCTTCAGGTCGTGTTCCTCGGTGG 96726 | || ||||||| ||| | | ||||| || |||| | || |||||| || || |||| Sbjct 408 GGATGCGCCCGCTGTCGTCGTCGTGCACCTGATGCAGCGGCACGTCGTGGTCTTCCGTGG 467 Query 96727 CCGCGTACATCTTCACCGGCACGTTGACCAACCCGAAGTTTACCGCGCCTGTCCA 96781 ||| | | | ||| || ||||||||||||| ||||||| | | || ||| |||| Sbjct 468 CCGAGAAGAGCTTGACGGGCACGTTGACCAGCCCGAAGCTCAGCGAGCCCTTCCA 522 >seq50100 Length=1361 Score = 82.4 bits (90), Expect = 5e-11 Identities = 80/103 (78%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 49173 GGCGTTCCCCACCATCACGCCTCACGACCTCCGGCACACCTGCGCATCGCTGGCCATCTC 49232 || ||| || | | |||| || |||||||| ||||||||| || ||||| || ||||| Sbjct 280 GGAGTTTCCGATCGTCACTCCGCACGACCTGCGGCACACCGCTGCCTCGCTCGCTATCTC 221 Query 49233 CTCGGGGGCCAACGTCAAGGCCGTCCAGAACCTCCTGGGGCAC 49275 |||| || ||||||||||||||||||| | | || || ||| Sbjct 220 GGCGGGCGCGAACGTCAAGGCCGTCCAGACCATGCTCGGACAC 178 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338973026681744