Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20pachinus_20[genbank_20GCA_5F900068735.1_202017-04-26] 277,083 sequences; 279,264,790 total letters Query= NC_023744.1 Length=60588 Score E Sequences producing significant alignments: (Bits) Value seq84152 477 4e-130 seq134864 196 2e-45 seq231474 165 3e-36 seq12676 161 4e-35 seq12675 120 1e-22 >seq84152 Length=5826 Score = 477 bits (528), Expect = 4e-130 Identities = 650/900 (72%), Gaps = 28/900 (3%) Strand=Plus/Plus Query 49612 CTGTCGCCGGGCAACTACAACCGCGACACCGATCGTTTCCCGTGCACCGCCGGCCGTATC 49671 ||||| ||||| |||||||||||| |||||||||| ||| ||| |||||| | || ||| Sbjct 4605 CTGTCACCGGGGAACTACAACCGCAACACCGATCGCTTCGCGTTCACCGCGGCGCGGATC 4664 Query 49672 GCCACCCTGACCGACCTCGCCGGCCGCGGCACGGACGGCATCCCAGCGGTTGACCTGTCG 49731 ||| | || ||| | | ||||| | | ||||| || ||||| | Sbjct 4665 GCCGCACT---CGAGG-CACAGGCCGAGTCC--GACGGTGTC---------GACCTCGGG 4709 Query 49732 CACTCACCGAAGTGGCGGGAACAGCTCGGAAGCCTCGGCGGCGGTAACCATTTCATCGAA 49791 ||||| ||||||||| || |||||||| ||||||||||| ||||| |||||||| Sbjct 4710 CACTCGAAGAAGTGGCGTGAGCAGCTCGGGTCGCTCGGCGGCGGCAACCACTTCATCGAG 4769 Query 49792 CTATGCCTGGACGAAACCGGCCGGGTGTGGCTGTTCCTGCACTCCGGGTCGCGTGGCGTC 49851 || ||||| ||||| ||| ||||||||| |||||||||||||||| ||||| || ||| Sbjct 4770 CTGTGCCTCGACGAGTCCGATCGGGTGTGGATGTTCCTGCACTCCGGTTCGCGGGGTGTC 4829 Query 49852 GGCAACAAGATCGCCCAAAAGCACATCAAGGTCGCGCAGAAACTCATGGACCGCTGGTGG 49911 |||||| |||||| || |||||| | |||||||||| || || | | |||| Sbjct 4830 GGCAACCGGATCGCGCAGCGACACATCGCGATCGCGCAGAAGCT---GGCCAGGAAGTGG 4886 Query 49912 ---ATTCAGCTCCCAAGCCCCGACCTGGCGTACTTGCCGCAAGGCACACCGGAGTTCGCC 49968 || |||||| | ||| ||||| |||||| ||||| | || |||||| ||| Sbjct 4887 CACATCGTGCTCCCGAACCCGGACCTCGCGTACCTGCCGTCCGAGACGCCGGAGCTCGAG 4946 Query 49969 GACTATCTGCGGGAGCTGCACTGGGCGCAGCGGTTCGCGCTAGAGAACCGCGCCGAAATG 50028 | || || ||||| ||| ||||| |||||||||||||| ||||||||||| || ||| Sbjct 4947 GTGTACCTCCGGGATCTGGCGTGGGCACAGCGGTTCGCGCTCGAGAACCGCGCTGAGATG 5006 Query 50029 ATGGACCGTTTCGCTATCGTGTTCGGCGAGTGGATCGGGCACCCCACCGGCGGGGCGCTG 50088 ||||| || ||| | ||||| | ||| | || ||| | | | ||| | Sbjct 5007 ATGGATCGCTTCCGGCAGGCGTTCGCGCACTGGGTAGGTCACGACGGTGACCCGGCCGAG 5066 Query 50089 GTGGAAACCA--CGG-TGAACACGCACCACAACTACACGACGCAGGAACGGCACGGCGGC 50145 | || ||| ||| | ||||| |||||||||||||| | || || ||||||||| Sbjct 5067 CTCGAGACCGAGCGGATCAACACCCACCACAACTACACCGTCCGAGAGCGACACGGCGGC 5126 Query 50146 CGCGACGTGTGGCTGACCCGCAAGGGCGCCATCGACGCGCACGCCGGCGTGATGGGCCTG 50205 ||||||||||||||||||||||| || ||||||||||||| || ||| |||| | Sbjct 5127 AAGGACGTGTGGCTGACCCGCAAGGGTGCGATCGACGCGCACGAGGGTGTGCGGGGCATC 5186 Query 50206 ATCCCGGGCAGCATGGGCACCCCGTCATACGTGGTGCGCGGCAAGGGCAACCCGGC--CG 50263 ||||||||| ||||| || | ||| ||| | ||| ||||||||| || |||| || Sbjct 5187 ATCCCGGGCTCGATGGGGACGCGGTCCTACATCGTGACCGGCAAGGG--ACACGGCGGCG 5244 Query 50264 GGCTGTGCTCGGCGCCGCACGGCGCCGGCCGCCGGCATTCCCGCACCCAAGCCCGGAAGC 50323 | ||||| ||||||||||||||||| || || ||| || || || | ||| | | Sbjct 5245 GTCTGTGTTCGGCGCCGCACGGCGCGGGGCGTCGGTTCTCACGGGCCGAGGCCAAGCGTC 5304 Query 50324 TGTTCACCGAGGCCGACCTCGCCGACCGGATGCAGGGTATCGAGTACCGGCACGGGGACG 50383 || |||||||||||| |||| | | |||| || ||||||||||||||||||| | Sbjct 5305 GGTACACCGAGGCCGATCTCGAGGCCGCGATGACCGGGATCGAGTACCGGCACGGGGCGG 5364 Query 50384 CGTGGGTTGACGAAATCCCGGACGCCTACAAGCCAATTCAGACCGTGATGGCCGACGCCG 50443 |||| | ||||| |||||| | || |||||| || | ||||||||||||||||| Sbjct 5365 AGTGGATCGACGAGATCCCGCAGGCGTACAAGAGCATCGACGTCGTGATGGCCGACGCCG 5424 Query 50444 CCGACCTCGTGGAGGTTGTGCACGAGCTGCGGCAGATTCTCAACGTCAAGGGCAAGTGAA 50503 ||||||| | | | ||| ||||| ||| | |||||||| ||||||| |||| Sbjct 5425 AGCGCCTCGTGTCGATCGACCACACCCTGCGTCAGGTGCTCAACGTGAAGGGCACCTGAA 5484 Score = 230 bits (254), Expect = 9e-56 Identities = 180/215 (84%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 49326 GCTGCTCAATTTCGCCTCCGAAATCGACGCGCTCACACTGGACCAGGCCAAGCAGACCGC 49385 ||||||||| ||||||||||| ||||||| | || | |||||||||||| ||||||| Sbjct 4378 GCTGCTCAACTTCGCCTCCGAGATCGACGAGAAGACGATCGACCAGGCCAAGGAGACCGC 4437 Query 49386 CGGCCTGCCGTTCGTCCACCCGCATGTGGCGCTGATGCCCGACGCGCACGCCGGCAAGGG 49445 | ||||| ||||| |||||||| |||||| ||||||| || |||||| ||||||||| Sbjct 4438 AGCGCTGCCCTTCGTGCACCCGCACGTGGCGTTGATGCCGGATGCGCACTACGGCAAGGG 4497 Query 49446 TTCATCGGTCGGCACCGTCATCCCGACTATCGACGCCGTGATCCCGGCCGCGGTGGGCGT 49505 || ||||||| |||||||||||||| |||||||||| |||||||||||||| || || Sbjct 4498 ATCCGCGGTCGGTACCGTCATCCCGACGGTCGACGCCGTCATCCCGGCCGCGGTCGGGGT 4557 Query 49506 GGACATCGGCTGCGGGATGATCGCCGCCCGCACCA 49540 |||||||| ||||| |||||||||| ||| |||| Sbjct 4558 CGACATCGGGTGCGGCATGATCGCCGTCCGGACCA 4592 >seq134864 Length=649 Score = 196 bits (216), Expect = 2e-45 Identities = 447/660 (68%), Gaps = 47/660 (7%) Strand=Plus/Minus Query 49801 GACGAAACCGGCCGGGTGTGGCTGTTCCTGCACTCCGGGTCGCGTGGCGTCGGCAACAAG 49860 ||||| |||||||| | ||| ||||||||||||||||||| || || ||||||||| | Sbjct 633 GACGAGACCGGCCGCATCTGGTTGTTCCTGCACTCCGGGTCCCGCGGTGTCGGCAACCGG 574 Query 49861 ATCGCCCAAAAGCACATCAAGGTCGCGCAGAAACTCATGGACCGCTGGTGGATTCAGCTC 49920 |||||||| | |||||| ||| || | ||| |||| | |||| |||| Sbjct 573 ATCGCCCAGCACCACATCGGGGTTGCCCGGAAGTCGATGGTGGACAACGGGATCGAGCTG 514 Query 49921 CCAAGCCCCGACCTGGCGTACTTGCCGCAAGGCACACCGGAGTTCGCCGACTATCTGCGG 49980 || | ||| || |||||| || | | ||||| |||||||| || ||| ||| Sbjct 513 GCAGATCGCGATCTCGCGTACCTGGTGGAGGGCACCGAGGAGTTCGACGCCTACCTGGCC 454 Query 49981 GAGCTGCACTGGGCGCAGCGGTTCGCGCTAGAGAACCGCGCCGAAATGATGGACCGTTTC 50040 ||||| |||||| |||| |||||| | ||||||| ||| |||||||| ||| || Sbjct 453 GAGCTCACCTGGGCACAGCAGTTCGCCGCACTCAACCGCGACGAGATGATGGAGCGTGTC 394 Query 50041 GCTATCGTGTTCGGCGAGTGGA--TCGGGCACCCCACCGGCGGGGCGCTGGTGGAAACCA 50098 | | ||| | || | || || | ||||| || | ||| || || Sbjct 393 G--------TGCGGTCACTGCAGTTCTGG------ATCGGCGCGGAGGTGGAGGTGTCCG 348 Query 50099 CGGTGAACACG-----CACCACAACTACACGACGCAGGA-ACGG--CACGGCG-GCCGCG 50149 || | | || ||||||||||||||| | | || ||| ||||| | || || Sbjct 347 AGG--ACCTCGGCTGCCACCACAACTACACGGCCCGCGAGACGCACCACGGTGAGCTGC- 291 Query 50150 ACGTGTGGCTGACCCGCAAGGGCGCCATCGACGCGCACGCCGGCGTGATGGGCCTGATCC 50209 ||||| || |||||||||| |||||| |||| | | |||||| || ||||||| Sbjct 290 ---TGTGGGTGTCCCGCAAGGGTGCCATCAACGCCGAGGTCGGCGTCCCCGGGCTGATCC 234 Query 50210 CGGGCAGCATGGGCACCCCGTCATACGTGGTGCGCGGCAAGGGCAAC---CCGGCCGGGC 50266 |||| ||||| || |||| ||||| ||| ||||| ||| ||| | | || | Sbjct 233 CGGGGTCGATGGGTACGGCGTCGTACGTCGTGTCCGGCAGGGGGAACGAGCAGTCC---C 177 Query 50267 TGTGCTCGGCGCCGCACGGCGCCGGCCGCCGGC--ATTCCCGCACCCAAGCCCGGAAGCT 50324 ||||| || |||||||| || ||||| ||| | || || || | || || ||| Sbjct 176 TGTGCAGTGCACCGCACGGAGCAGGCCG--GGCCTACTCGCGGACGAAGGCGCGCAAGAC 119 Query 50325 GTTCACCGAGGCCGACCTCGCCGACCG-GATGCAGGGTATCGAGTACCGGCACGGGGACG 50383 ||||| | | |||||| || | | | |||| || ||||||||||| || ||| | Sbjct 118 CTTCACGGTCGACGACCT-GCGGGCGGCGATGGTCGGGATCGAGTACCGCGACACGGAGG 60 Query 50384 CGTGGGTTGACGAAATCCCGGACGCCTACAAGCCAATTCAGACC--GTGATGGCCGACGC 50441 ||| || ||||| ||||| | |||||||||| || |||| ||||||||||| || Sbjct 59 CGTTCGTCGACGAGATCCCCGGCGCCTACAAGGACAT--CGACCAGGTGATGGCCGATGC 2 >seq231474 Length=516 Score = 165 bits (182), Expect = 3e-36 Identities = 337/491 (69%), Gaps = 25/491 (5%) Strand=Plus/Plus Query 49812 CCGGGTGTGGCTGTTCCTGCACTCCGGGTCGCGTGGCGTCGGCAACAAGATCGCCCAAAA 49871 ||| || |||||||||||||||||||| || || ||||||||||||||||||||||| | Sbjct 9 CCGCGTCTGGCTGTTCCTGCACTCCGGCTCCCGCGGCGTCGGCAACAAGATCGCCCAGCA 68 Query 49872 GCACATCAAGGTCGCGCAGAAACTCATG--GACCGCTGGTGGATTCAGCTCCCAAGCCCC 49929 ||||||||||||||| || || || || ||||||||||| | || || |||| Sbjct 69 CCACATCAAGGTCGCG-AGCGACCTGTGCCGA-CGCTGGTGGATCGACCTGCCCGACCCC 126 Query 49930 GACCTGGCGTACTTGCCGCAAGG----CACACCGGAGTTCGCCGACTATCTGCGGGAGCT 49985 ||||| || ||| || | | || |||| |||| | ||| | || ||| | Sbjct 127 GACCTCGCCTACCTGGTGGAGGGGGACGACAC----GTTCTGGGCCTACATCCGCGAGAT 182 Query 49986 GCACTGGGCGCAGCGGTTCGCGCTAGAGAACCGCGCCGAAATGATGGACCGTTTCGCTAT 50045 || ||||| |||| ||||| || ||||||| || |||||| |||| || Sbjct 183 GCGGTGGGCCCAGCACTTCGCCCTGCTCAACCGCGAGGAGATGATGCACCGCGTCCAGGA 242 Query 50046 CGTGTTCGGCGAGTGGATCGGGCACCCCACCGGCGGGGCGCTGGTGGAAACCACGGTGAA 50105 || || ||| | || | || | | ||| | || || ||| ||| | || Sbjct 243 GGTCGTC-GCG-GACGAGCTGG-GCGCGACC------GTGCAGGCGGACGAGACGATCAA 293 Query 50106 CACGCACCACAACTACACGACGCAGGAACGGCACGGCGGCCGCGACGTGTGGCTGACCCG 50165 | |||||||||||||| || || || ||| ||||| |||||| || |||| Sbjct 294 CTGCCACCACAACTACACCGAGCGCGAGCGCGTGTTCGGTCGCGAGGTGTGGGTGTCCCG 353 Query 50166 CAAGGGCGCCATCGACGCGCACGCCGGCGTGAT--GGGCCTGATCCCGGGCAGCATGGGC 50223 ||||||||| ||| || || || | ||||| || |||||||| ||| |||||| Sbjct 354 CAAGGGCGCGATC--CGTGCGGGCAAGGGTGATCGCGGGCTGATCCCCGGCTCGATGGGC 411 Query 50224 ACCCCGTCATACGTGGTGCGCGGCAAGGGCAACCCGGCCGGGCTGTGCTCGGCGCCGCAC 50283 || |||| ||||| || ||| |||| ||||| | |||| ||||| |||||| Sbjct 412 ACGGCGTCGTACGTCGTCACGGGCCTGGGCTACCCGCCGTCGCTGATGTCGGCCCCGCAC 471 Query 50284 GGCGCCGGCCG 50294 || |||||||| Sbjct 472 GGGGCCGGCCG 482 >seq12676 Length=358 Score = 161 bits (178), Expect = 4e-35 Identities = 178/237 (75%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 49348 ATCGACGCGCTCACACTGGACCAGGCCAAGCAGACCGCCGGCCTGCCGTTCGTCCACCCG 49407 ||||||| ||||| || | ||||||||||||||||||| || |||| ||| Sbjct 122 ATCGACGACCTCACGCTCGCGCAGGCCAAGCAGACCGCCGAGCTCGACATCGTGTCGCCG 181 Query 49408 CATGTGGCGCTGATGCCCGACGCGCACGCCGGCAAGGGTTCATCGGTCGGCACCGTCATC 49467 | ||||||||||||| ||||||||| |||||||| | ||||||| |||||||| Sbjct 182 TACCTGGCGCTGATGCCGGACGCGCACCTGGGCAAGGGAGCGACGGTCGGTTCCGTCATC 241 Query 49468 CCGACTATCGACGCCGTGATCCCGGCCGCGGTGGGCGTGGACATCGGCTGCGGGATGATC 49527 || || | ||||| | |||||||||||||| || ||||||||||||||||||||| | Sbjct 242 CCCACCAGGGACGCGATCATCCCGGCCGCGGTCGGGGTGGACATCGGCTGCGGGATGCGC 301 Query 49528 GCCGCCCGCACCATCTACACCGAGGACGACCTGGACGGCCGGGACCTCGCCGCGCTG 49584 || | | | ||| | || || | ||| |||| |||||| || ||||| ||||| Sbjct 302 GCGGTCAGGACCCAGTTCAGCGTCGCCGATCTGGCCGGCCGCGATCTCGCAACGCTG 358 >seq12675 Length=485 Score = 120 bits (132), Expect = 1e-22 Identities = 115/146 (79%), Gaps = 1/146 (1%) Strand=Plus/Minus Query 49477 GACGCCGTGATCCCGGCCGCGGTGGGCGTGGACATCGGCTGCGGGATGATCGCCGCCCGC 49536 |||||| | |||||||| ||||| |||||||||||||| ||||||||| || | ||| Sbjct 176 GACGCCATCATCCCGGCGGCGGTCGGCGTGGACATCGGGTGCGGGATGCGGGCGGTCCGG 117 Query 49537 ACCATCTACACCGAGGACGACCTGGACGGCCGGGACCTCGCCGCGCTGCGGCACGCCATC 49596 ||| | | || | ||| |||| ||||||||| || |||||||| |||||| | ||| Sbjct 116 ACCCAGTTCGTCGTCGCCGATCTGGCCGGCCGGGATCTGGCCGCGCTTCGGCACTCGATC 57 Query 49597 GAGGGCGCGATCCCGCTGTC-GCCGG 49621 ||| ||| ||||||||||| ||||| Sbjct 56 GAGCGCGGCATCCCGCTGTCGGCCGG 31 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 193122459725300