Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20pachinus_20[genbank_20GCA_5F900068735.1_202017-04-26] 277,083 sequences; 279,264,790 total letters Query= NC_023747.1 Length=59672 Score E Sequences producing significant alignments: (Bits) Value seq84152 452 1e-122 seq134864 226 1e-54 seq231474 159 1e-34 seq12676 105 3e-18 seq189415 98.7 4e-16 >seq84152 Length=5826 Score = 452 bits (500), Expect = 1e-122 Identities = 586/794 (74%), Gaps = 33/794 (4%) Strand=Plus/Plus Query 54320 GTCGACCTGTCTCACTCCCCGAAGTGGCGGGAGCAGCTCGGCACGCTGGGCGGTGGTAAT 54379 |||||||| ||||| ||||||||| ||||||||||| |||| ||||| || || Sbjct 4698 GTCGACCTCGGGCACTCGAAGAAGTGGCGTGAGCAGCTCGGGTCGCTCGGCGGCGGCAAC 4757 Query 54380 CACTTCATCGAGCTGTGCCTGGACCACCTCGACCGTGTGTGGTTGTTCCTGCACTCCGGT 54439 |||||||||||||||||||| ||| | ||| || |||||| ||||||||||||||||| Sbjct 4758 CACTTCATCGAGCTGTGCCTCGACGAGTCCGATCGGGTGTGGATGTTCCTGCACTCCGGT 4817 Query 54440 TCGCGTGGTGTCGGTAACAAGATCGCGCAGAAGCACATTCAGGCCGCGCAGG-GCTATTG 54498 ||||| |||||||| ||| |||||||||| ||||| | ||||||| ||| | Sbjct 4818 TCGCGGGGTGTCGGCAACCGGATCGCGCAGCGACACATCGCGATCGCGCAGAAGCTG--G 4875 Query 54499 CCAGGCGAACGGGCTGCACGTGC---CGCACAAGGATCTGGCGTACCT--CGTC-GAGGG 54552 ||||| || ||| ||||| || || ||| || |||||||| |||| ||| Sbjct 4876 CCAGG--AAGTGGCACATCGTGCTCCCGAACCCGGACCTCGCGTACCTGCCGTCCGAG-- 4931 Query 54553 CACGGTCGAGTTCGACCGCTACCTCGTTGAATTGCGTTGGGCGCAGCGGTTTGCGTACTA 54612 ||| ||| |||| |||||| || || ||||| |||||||| ||| | | Sbjct 4932 -ACGCCGGAGCTCGAGGTGTACCTCCGGGATCTGGCGTGGGCACAGCGGTTCGCGCTCGA 4990 Query 54613 CAACCGCGCCGAAATGATGGACCGATTCGAGCAGGCGTTCAGGCATTGGGTCGGGGCCGA 54672 |||||||| || |||||||| || ||| |||||||||| ||| ||||| || ||| Sbjct 4991 GAACCGCGCTGAGATGATGGATCGCTTCCGGCAGGCGTTCGCGCACTGGGTAGGTCACGA 5050 Query 54673 CCAGGGC---GCCGAGCTGGTCGTCGAGACCATCAACGCGCACCACAACTACAC--GCAG 54727 | | | |||||||| | |||| |||||| | |||||||||||||| | | Sbjct 5051 CGGTGACCCGGCCGAGCTCGAGACCGAGCGGATCAACACCCACCACAACTACACCGTCCG 5110 Query 54728 AAGGAGCGGCACGGCGACCGTGACGTGTGGCTGACCCGTAAGGGTGCGATCGACGCGAAC 54787 | ||||| ||||||| | ||||||||||||||||| |||||||||||||||||| || Sbjct 5111 A--GAGCGACACGGCGGCAAGGACGTGTGGCTGACCCGCAAGGGTGCGATCGACGCGCAC 5168 Query 54788 GAGGGTGTGCGGGGCCTGATTCCGGGCTCGATGGGCACCTGTTCGTATGTCGTGACCGGC 54847 ||||||||||||||| | || |||||||||||||| || | || || ||||||||||| Sbjct 5169 GAGGGTGTGCGGGGCATCATCCCGGGCTCGATGGGGACGCGGTCCTACATCGTGACCGGC 5228 Query 54848 AAGGGCAATCCCGAGGCG--TTGTGCTCGGCGCCGCATGGTGCGGGCCGCCGGTTCTCGC 54905 ||||| | | | |||| |||| ||||||||||| || ||||| || |||||||| | Sbjct 5229 AAGGG--ACACGGCGGCGGTCTGTGTTCGGCGCCGCACGGCGCGGGGCGTCGGTTCTCAC 5286 Query 54906 GCACGAAGGCGCGCAAG---CTGTTCACGGTCGACGACCTCGAAG-CGCGTATGACGGGC 54961 | | |||| |||| | || ||| | | ||| ||||| | |||| ||||| || Sbjct 5287 GGGCCGAGGC---CAAGCGTCGGTACACCGAGGCCGATCTCGAGGCCGCG-ATGACCGGG 5342 Query 54962 ATCGAGTACCGCAAGGGCGAGGCGTGGGTCGACGAGATTCCCGACGCATACAAGCCGATC 55021 ||||||||||| | || | || |||| |||||||||| || | || |||||| ||| Sbjct 5343 ATCGAGTACCGGCACGGGGCGGAGTGGATCGACGAGATCCCGCAGGCGTACAAGAGCATC 5402 Query 55022 GACGTCGTGATGCACGACGCCGAGACGCTGGTGTCGGTGGATGCCGAGCTGCGGCAGCTC 55081 |||||||||||| |||||||||| || |||||| | || | ||||| ||| | Sbjct 5403 GACGTCGTGATGGCCGACGCCGAGCGCCTCGTGTCGATCGACCACACCCTGCGTCAGGTG 5462 Query 55082 TTGAACGTCAAGGG 55095 | ||||| ||||| Sbjct 5463 CTCAACGTGAAGGG 5476 Score = 145 bits (160), Expect = 3e-30 Identities = 161/215 (75%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 53942 CTGATCAACTTTGCGAGCGAGGTCGACGACCAGACTCTCGCGCAGGCGCAGCAGATCGCC 54001 ||| ||||||| || |||| ||||||| |||| ||| ||||| || ||| ||| Sbjct 4379 CTGCTCAACTTCGCCTCCGAGATCGACGAGAAGACGATCGACCAGGCCAAGGAGACCGCA 4438 Query 54002 GATCTGCCTTTCGTTTATCCGCATGTGGCGCTGATGCCCGATGCGCATTTCGGTAAGGGC 54061 | ||||| ||||| | ||||| |||||| ||||||| |||||||| | ||| ||||| Sbjct 4439 GCGCTGCCCTTCGTGCACCCGCACGTGGCGTTGATGCCGGATGCGCACTACGGCAAGGGA 4498 Query 54062 AGCAGTGTCGGCACGGTGATCCCAACCGAGGGCGCTGTGATCCCGGCGGCCGTCGGCGTC 54121 | ||||| || || ||||| || | | ||| || |||||||| || ||||| ||| Sbjct 4499 TCCGCGGTCGGTACCGTCATCCCGACGGTCGACGCCGTCATCCCGGCCGCGGTCGGGGTC 4558 Query 54122 GATATTGGTTGCGGCATGATCGCGGCCCGCACCAC 54156 || || || |||||||||||||| | ||| ||||| Sbjct 4559 GACATCGGGTGCGGCATGATCGCCGTCCGGACCAC 4593 >seq134864 Length=649 Score = 226 bits (250), Expect = 1e-54 Identities = 437/632 (69%), Gaps = 27/632 (4%) Strand=Plus/Minus Query 54419 TGGTTGTTCCTGCACTCCGGTTCGCGTGGTGTCGGTAACAAGATCGCGCAGAAGCACATT 54478 |||||||||||||||||||| || || |||||||| ||| |||||| ||| | ||||| Sbjct 615 TGGTTGTTCCTGCACTCCGGGTCCCGCGGTGTCGGCAACCGGATCGCCCAGCACCACATC 556 Query 54479 CAGGCCGCGCAG--GGCTATTGCCAGGCGAACGGGCTGCACGTGCCGCACAAGGATCTGG 54536 || || | | | | || | || |||||| | | || | | ||||| | Sbjct 555 GGGGTTGCCCGGAAGTCGATGGT--GGACAACGGGATCGAGCTGGCAGATCGCGATCTCG 498 Query 54537 CGTACCTCGTCGAGGGCACGGTCGAGTTCGACCGCTACCTCGTTGAATTGCGTTGGGCGC 54596 ||||||| || |||||||| | ||||||||| |||||| | || | ||||| | Sbjct 497 CGTACCTGGTGGAGGGCACCGAGGAGTTCGACGCCTACCTGGCCGAGCTCACCTGGGCAC 438 Query 54597 AGCGGTTTGC-GTACTACAACCGCGCCGAAATGATGGACCGATTCGAGCAGGCGTTCAGG 54655 ||| ||| || | ||| |||||||| ||| |||||||| || ||| || | | | | Sbjct 437 AGCAGTTCGCCGCACT-CAACCGCGACGAGATGATGGAGCGTGTCGTGCGGTCACTGCAG 379 Query 54656 CATTGGGTCGGGGCCGACCAGGGCGCCGAGCTGGTCGTCGAGACCATCAACGCGCACCAC 54715 ||| |||| || || || | ||| || || |||| | || | |||||| Sbjct 378 TTCTGGATCGGCGCGGA----GGTG--GAGGTG-TC--CGAGGACCTCGGCTGCCACCAC 328 Query 54716 AACTACACG---CAGAAGGAGCGGCACGGCGACCGTGACGTGTGGCTGACCCGTAAGGGT 54772 ||||||||| | || || ||||| || | || ||||| || |||| |||||| Sbjct 327 AACTACACGGCCCGCGAGACGCACCACGGTGAGC-TGC--TGTGGGTGTCCCGCAAGGGT 271 Query 54773 GCGATCGACGCGAACGAGGGTGTGCGGGGCCTGATTCCGGGCTCGATGGGCACCTGTTCG 54832 || ||| |||| | | || || | || ||||| ||||| |||||||| || ||| Sbjct 270 GCCATCAACGCCGAGGTCGGCGTCCCCGGGCTGATCCCGGGGTCGATGGGTACGGCGTCG 211 Query 54833 TATGTCGTGACCGGCAAGGGCAATCCCGAGGCGT---TGTGCTCGGCGCCGCATGGTGCG 54889 || |||||| |||||| ||| || |||| || ||||| || ||||| || || Sbjct 210 TACGTCGTGTCCGGCAGGGGGAA---CGAGCAGTCCCTGTGCAGTGCACCGCACGGAGCA 154 Query 54890 GGCCGCCGGTTCTCGCGCACGAAGGCGCGCAAGCTGTTCACGGTCGACGACCTCGAAGCG 54949 ||||| | |||||| ||||||||||||||| ||||||||||||||||| ||| Sbjct 153 GGCCGGGCCTACTCGCGGACGAAGGCGCGCAAGACCTTCACGGTCGACGACCTGCGGGCG 94 Query 54950 CGTATGACGGGCATCGAGTACCGCAAGGGCGAGGCGTGGGTCGACGAGATTCCCGACGCA 55009 ||| || |||||||||||| | ||||||| ||||||||||| |||| ||| Sbjct 93 GCGATGGTCGGGATCGAGTACCGCGACACGGAGGCGTTCGTCGACGAGATCCCCGGCGCC 34 Query 55010 TACAAGCCGATCGACGTCGTGATGCACGACGC 55041 |||||| |||||| |||||| ||| || Sbjct 33 TACAAGGACATCGACCAGGTGATGGCCGATGC 2 >seq231474 Length=516 Score = 159 bits (176), Expect = 1e-34 Identities = 335/493 (68%), Gaps = 25/493 (5%) Strand=Plus/Plus Query 54410 GACCGTGTGTGGTTGTTCCTGCACTCCGGTTCGCGTGGTGTCGGTAACAAGATCGCGCAG 54469 ||||| || ||| |||||||||||||||| || || || ||||| ||||||||||| ||| Sbjct 7 GACCGCGTCTGGCTGTTCCTGCACTCCGGCTCCCGCGGCGTCGGCAACAAGATCGCCCAG 66 Query 54470 AAGCACATTCAGGCCGCGCAGGGCTATTGCCAGGCGAACG-GGCTGCACGTGCCGCACAA 54528 | ||||| ||| |||| | | |||| | || | || | || |||| || Sbjct 67 CACCACATCAAGGTCGCGAGCGACCTGTGCC-GACGCTGGTGGATCGACCTGCCCGACCC 125 Query 54529 GGATCTGGCGTACCTCGTCGAGGGCACGGTCGA---GTTCGACCGCTACCTCGTTGAATT 54585 || || || ||||| || ||||| || ||| |||| |||| || || | Sbjct 126 CGACCTCGCCTACCTGGTGGAGGG---GGACGACACGTTCTGGGCCTACATCCGCGAGAT 182 Query 54586 GCGTTGGGCGCAGCGGTTTGCG-TACTACAACCGCGCCGAAATGATGGACCGATTCGAGC 54644 ||| ||||| |||| || || | || |||||||| || |||||| |||| || || Sbjct 183 GCGGTGGGCCCAGCACTTCGCCCTGCT-CAACCGCGAGGAGATGATGCACCGCGTCCAGG 241 Query 54645 AGGCGTTCAGGCATTGGGTCGGGGCCGACCAGGGCGC---CGAGCTGGTCGTCGAGACCA 54701 ||| || |||| || ||| | |||||| || || || | |||||| | Sbjct 242 AGG---TC---------GTCGCGGACGAGCTGGGCGCGACCGTGCAGGCGGACGAGACGA 289 Query 54702 TCAACGCGCACCACAACTACACGCAGAAGGAGCGGCACGGCGACCGTGACGTGTGGCTGA 54761 ||||| |||||||||||||| || ||||| || || || |||||| || Sbjct 290 TCAACTGCCACCACAACTACACCGAGCGCGAGCGCGTGTTCGGTCGCGAGGTGTGGGTGT 349 Query 54762 CCCGTAAGGGTGCGATCGACGCGAACGAGGGTGTGCGGGGCCTGATTCCGGGCTCGATGG 54821 |||| ||||| |||||| ||| | |||||| || || ||||| || |||||||||| Sbjct 350 CCCGCAAGGGCGCGATCCGTGCGGGCAAGGGTGATCGCGGGCTGATCCCCGGCTCGATGG 409 Query 54822 GCACCTGTTCGTATGTCGTGACCGGCAAGGGCAATCCCGAGGCGTTGTGCTCGGCGCCGC 54881 |||| ||||| ||||| || ||| |||| | || | || || ||||| |||| Sbjct 410 GCACGGCGTCGTACGTCGTCACGGGCCTGGGCTACCCGCCGTCGCTGATGTCGGCCCCGC 469 Query 54882 ATGGTGCGGGCCG 54894 | || || ||||| Sbjct 470 ACGGGGCCGGCCG 482 >seq12676 Length=358 Score = 105 bits (116), Expect = 3e-18 Identities = 140/192 (73%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 53964 TCGACGACCAGACTCTCGCGCAGGCGCAGCAGATCGCCGATCTGCCTTTCGTTTATCCGC 54023 ||||||||| || ||||||||||| |||||| |||||| || |||| | ||| Sbjct 123 TCGACGACCTCACGCTCGCGCAGGCCAAGCAGACCGCCGAGCTCGACATCGTGTCGCCGT 182 Query 54024 ATGTGGCGCTGATGCCCGATGCGCATTTCGGTAAGGGCAGC-AGTGTCGGCACGGTGATC 54082 | ||||||||||||| || ||||| | || ||||| ||| | ||||| | || ||| Sbjct 183 ACCTGGCGCTGATGCCGGACGCGCACCTGGGCAAGGG-AGCGACGGTCGGTTCCGTCATC 241 Query 54083 CCAACCGAGGGCGCTGTGATCCCGGCGGCCGTCGGCGTCGATATTGGTTGCGGCATGATC 54142 || ||| || ||| | |||||||| || ||||| || || || || ||||| ||| | Sbjct 242 CCCACCAGGGACGCGATCATCCCGGCCGCGGTCGGGGTGGACATCGGCTGCGGGATGCGC 301 Query 54143 GCGGCCCGCACC 54154 |||| | | ||| Sbjct 302 GCGGTCAGGACC 313 >seq189415 Length=2896 Score = 98.7 bits (108), Expect = 4e-16 Identities = 90/114 (79%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 37396 TGCGCGCAGACCGACCCCGAAATCTTCTTTCCAAAGCAGGGCGGCAGCACCCGCGAGGCC 37455 |||||||||||||||||||| ||||| || || |||||||| |||||||||||| Sbjct 551 TGCGCGCAGACCGACCCCGAGGCGTTCTTCCCCGAGAAGGGCGGCTCGACCCGCGAGGCC 492 Query 37456 AAGCGCATTTGCGGCGGCTGCCAGGTGGCCGACGAGTGCCTCGCGTGGGCGCTG 37509 |||||||| ||| |||||| ||||| | |||||||||| || |||||| Sbjct 491 AAGCGCATCTGCCAGGGCTGCGAGGTGAAGGCGGAGTGCCTCGAGTACGCGCTG 438 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 190200904430364