Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20pachinus_20[genbank_20GCA_5F900068735.1_202017-04-26] 277,083 sequences; 279,264,790 total letters Query= NC_024148.1 Length=50101 Score E Sequences producing significant alignments: (Bits) Value seq4597 96.9 1e-15 seq47396 84.2 7e-12 >seq4597 Length=157418 Score = 96.9 bits (106), Expect = 1e-15 Identities = 134/185 (72%), Gaps = 12/185 (6%) Strand=Plus/Plus Query 34488 TCGACCTCGACCGAGATGTTGGTCGTCCAGTGCGA--ACCGGT--GTCCTGC--TTGATC 34541 || |||||||| |||||||| || |||||||| | ||| || | | ||| ||||| Sbjct 124422 TCTACCTCGACGGAGATGTTCGTGGTCCAGTGAGTGGACCAGTCGGCCTTGCAGTTGAT- 124480 Query 34542 GTCAGGAACTGGTCGATCTGCGGGTCGTTCCAGTGCATCATCGCCATGCGCGCCGACCGG 34601 ||| | | || | |||||||| |||| |||||| ||||| ||||| ||||| Sbjct 124481 -----GAAGTCGAAGACTTCCGGGTCGTCCCAGACCATCATTGCCATACGCGCGGACCGA 124535 Query 34602 CGCACACCACCAGCGACCACACACTGTGCGATGGCGTGGTCGATCTCCATCGCGTCCAAG 34661 || ||||||| ||||| || | |||||| |||||||||||| ||| || || | | Sbjct 124536 CGTGCACCACCTGCGACGACGGATGCCGCGATGTCGTGGTCGATCTGCATGGCCTCGATG 124595 Query 34662 CCGGT 34666 ||||| Sbjct 124596 CCGGT 124600 >seq47396 Length=7053 Score = 84.2 bits (92), Expect = 7e-12 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 3799 AGGCGCGTAGCTCAATTGGAAGAGCAGCGGTCTCCAAAGCCGCCGGCTGCAGGTTCGAGC 3858 ||| ||||||||||| ||| |||||||||||||||||| |||| || ||||||||| || Sbjct 4053 AGGGGCGTAGCTCAACTGGCAGAGCAGCGGTCTCCAAAACCGCAGGTTGCAGGTTCAAGT 4112 Query 3859 CCTGCCGCGTCTGC 3872 |||| ||| |||| Sbjct 4113 CCTGTCGCCCCTGC 4126 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 159674478963298