Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20pachinus_20[genbank_20GCA_5F900068735.1_202017-04-26] 277,083 sequences; 279,264,790 total letters Query= NC_024366.1 Length=62661 Score E Sequences producing significant alignments: (Bits) Value seq84152 369 1e-97 seq134864 230 9e-56 seq231474 197 6e-46 seq171065 134 6e-27 seq74518 129 2e-25 seq47396 87.8 7e-13 seq20617 82.4 3e-11 >seq84152 Length=5826 Score = 369 bits (408), Expect = 1e-97 Identities = 603/858 (70%), Gaps = 37/858 (4%) Strand=Plus/Plus Query 53740 CGTTCACCGCGCCGCGCATCGAATACCTGGAAGACCTCGCCGACCGCAACCGCGTCAACC 53799 ||||||||||| |||| |||| || || | | ||||| | || | ||| ||| Sbjct 4645 CGTTCACCGCGGCGCGGATCGCCGCACTCGAGGCACAGGCCGAGTCCGACGGTGTCGACC 4704 Query 53800 TGTCGCACTCCCCGAAGTGGCGCGAACAACTCGGCACACTCGGCGGCGGCAACCACTTCA 53859 | |||||| ||||||||| || || ||||| | |||||||||||||||||||||| Sbjct 4705 TCGGGCACTCGAAGAAGTGGCGTGAGCAGCTCGGGTCGCTCGGCGGCGGCAACCACTTCA 4764 Query 53860 TCGAACTGTGCGTCGACCAGCACGGCCGGCTGTGGCTGTTCCTGCATTCCGGTTCACGCG 53919 |||| |||||| ||||| || || ||| ||||| |||||||||| |||||||| || | Sbjct 4765 TCGAGCTGTGCCTCGACGAGTCCGATCGGGTGTGGATGTTCCTGCACTCCGGTTCGCGGG 4824 Query 53920 GTGTCGGCAACAAGATCGCCCAGAAGCACATCAAGATCGCGCAAGCCGAATGCGCCGAGC 53979 ||||||||||| |||||| ||| |||||| ||||||||| ||| | | || Sbjct 4825 GTGTCGGCAACCGGATCGCGCAGCGACACATCGCGATCGCGCA----GAAGCTGGCCAGG 4880 Query 53980 ATGGTG----TCGAACTGCCCGGCGGCAACAAGGATCTAGCCTACCT--CGTCGAGGGCG 54033 | | | ||| || |||| ||| ||| || || ||||| |||| | || Sbjct 4881 AAGTGGCACATCGTGCT-CCCG-----AACCCGGACCTCGCGTACCTGCCGTCCGAGACG 4934 Query 54034 AACCGTCGTTCGGCGCGTACCTCGCTGAGCTGCGTTGGGCGCAACAGTTCGCGATGTTCA 54093 ||| | ||| | ||||||| || ||| ||||| || | ||||||| | | Sbjct 4935 --CCGGAGCTCGAGGTGTACCTCCGGGATCTGGCGTGGGCACAGCGGTTCGCGCTCGAGA 4992 Query 54094 ACCGCAACGAGATGATGGACCGGTACCGGCAAGCGTTCGCGCACTGGCTCGACATCGGTG 54153 ||||| ||||||||||| || | |||||| ||||||||||||||| | | || Sbjct 4993 ACCGCGCTGAGATGATGGATCGCTTCCGGCAGGCGTTCGCGCACTGGGTAG------GTC 5046 Query 54154 TCGACGAGGCGCCAGTCGTCGAGATCGCCGGCGAACGCGTCAACGCGCACCACAACTACA 54213 ||||| | || | || || ||| ||| || ||||| | ||||||||||||| Sbjct 5047 ACGACGGTGACCCGGCCG---AGCTCGAGACCGAGCGGATCAACACCCACCACAACTACA 5103 Query 54214 CCACCCAGGAGC-ACATCAACGGTGAGCTGGTGTGGGTGACCCGCAAGGGCGCCATCAGC 54272 || || |||| ||| | ||| || |||||| ||||||||||||| || ||| | Sbjct 5104 CCGTCCGAGAGCGACA-CGGCGGCAAGGACGTGTGGCTGACCCGCAAGGGTGCGATCGAC 5162 Query 54273 GCGCAACTCGGTGAGCGTGGCCTCATCCCCGGCAGCATGGGCACGGCCTCCTACGTCGTC 54332 ||||| |||| ||| ||| ||||||| ||| ||||| ||| |||||| |||| Sbjct 5163 GCGCACGAGGGTGTGCGGGGCATCATCCCGGGCTCGATGGGGACGCGGTCCTACATCGTG 5222 Query 54333 ACCGGTAAAGGCAACCCCGAAGGGCTGCATTCCGCGCCGCACGGCGCCGGCCGCCGCTAC 54392 ||||| || || || || || ||| ||| |||||||||||||| || || || | | Sbjct 5223 ACCGGCAAGGGACACGGCGGCGGTCTGTGTTCGGCGCCGCACGGCGCGGGGCGTCGGTTC 5282 Query 54393 TCCCGCACCAAGGCACGCAAG---CTGTTCACCGTCGACGACCTCGCAGACCG-TATGCG 54448 || || || |||| |||| | || ||||| | ||| |||| || ||| ||| Sbjct 5283 TCACGGGCCGAGGC---CAAGCGTCGGTACACCGAGGCCGATCTCG-AGGCCGCGATGAC 5338 Query 54449 CGGCATCGAATACCGGCACGGTGAGGCGTGGGTCGACGAGATTCCCGACGCCTACAAGCC 54508 ||| ||||| ||||||||||| | || |||| |||||||||| || | || |||||| Sbjct 5339 CGGGATCGAGTACCGGCACGGGGCGGAGTGGATCGACGAGATCCCGCAGGCGTACAAGAG 5398 Query 54509 GATTGACGTTGTCATGCACGACGCCGAAGACCTCGTGTCGGTTGACGTCGAGCTGCGTCA 54568 || ||||| || ||| ||||||||| |||||||||| | ||| | |||||||| Sbjct 5399 CATCGACGTCGTGATGGCCGACGCCGAGCGCCTCGTGTCGATCGACCACACCCTGCGTCA 5458 Query 54569 AATCGTCAACGTCAAGGG 54586 | ||||||| ||||| Sbjct 5459 GGTGCTCAACGTGAAGGG 5476 Score = 84.2 bits (92), Expect = 9e-12 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 53405 CAACCCGAAACTCATCAACTTCGCCAGCGAGGTCGACGCCGAAACCATCACGCAGGCAGA 53464 ||||| || || ||||||||||| |||| |||||| | || ||| ||||| | Sbjct 4369 CAACCTCAAGCTGCTCAACTTCGCCTCCGAGATCGACGAGAAGACGATCGACCAGGCCAA 4428 Query 53465 ACAAATCGCCGAACTGCCATTCGTCTACCCGCACGTTGCGCTCATGCCCGACGCGCACGT 53524 | | ||| | ||||| ||||| |||||||||| ||| | ||||| || |||||| Sbjct 4429 GGAGACCGCAGCGCTGCCCTTCGTGCACCCGCACGTGGCGTTGATGCCGGATGCGCACTA 4488 Query 53525 AGGCAAAGGCTCATCCGTCGGCACAGTCATCCCCAC 53560 ||||| || || | ||||| || |||||||| || Sbjct 4489 CGGCAAGGGATCCGCGGTCGGTACCGTCATCCCGAC 4524 >seq134864 Length=649 Score = 230 bits (254), Expect = 9e-56 Identities = 445/644 (69%), Gaps = 47/644 (7%) Strand=Plus/Minus Query 53873 CGACCAGCACGGCCGGCTGTGGCTGTTCCTGCATTCCGGTTCACGCGGTGTCGGCAACAA 53932 |||| || |||||| | ||| |||||||||| ||||| || ||||||||||||||| Sbjct 634 CGACGAGACCGGCCGCATCTGGTTGTTCCTGCACTCCGGGTCCCGCGGTGTCGGCAACCG 575 Query 53933 GATCGCCCAGAAGCACATCAAGATCGCGC--AAGCCGAATGCGCCGAGCATGGTGTCGAA 53990 |||||||||| | |||||| | | || | ||| ||| | | || | || |||| Sbjct 574 GATCGCCCAGCACCACATCGGGGTTGCCCGGAAGTCGATGGTG--GACAACGGGATCGAG 517 Query 53991 CTGCCCGGCGGCAACAAGGATCTAGCCTACCTCGTCGAGGGCGAACCGTCG--TTCGGCG 54048 ||| | | || ||||| || ||||| || |||||| |||| | |||| || Sbjct 516 CTGGCAGATCGC------GATCTCGCGTACCTGGTGGAGGGC--ACCGAGGAGTTCGACG 465 Query 54049 CGTACCTCGCTGAGCTGCGTTGGGCGCAACAGTTCGCGATGTTCAACCGCAACGAGATGA 54108 | ||||| || ||||| ||||| || |||||||| |||||||| ||||||||| Sbjct 464 CCTACCTGGCCGAGCTCACCTGGGCACAGCAGTTCGCCGCACTCAACCGCGACGAGATGA 405 Query 54109 TGGACCG-GTACCGGCAAGCGTTCGCGCACTGGCTCGACATCGGTGTCGACGAGGCGCCA 54167 |||| || || ||| || ||||| | || | ||| || || | Sbjct 404 TGGAGCGTGT---------CGTGCGGTCACTGC----AGTTCTGGATCGGCGCGGAG--- 361 Query 54168 GTCGTCGAGATCGCCGGCGAACGCGTCAACGCGCACCACAACTACACCACCCAGGAG-CA 54226 || ||| | ||| || | || | | |||||||||||||| ||| ||| | Sbjct 360 ---GTGGAGGTGTCCGAGGACCTCGGCTGC---CACCACAACTACACGGCCCGCGAGACG 307 Query 54227 CATCAACGGTGAGCTGGTGTGGGTGACCCGCAAGGGCGCCATCAGCGCGCAACTCGGTGA 54286 || || |||||||||| |||||||| |||||||||| ||||||| ||| | |||| | Sbjct 306 CACCA-CGGTGAGCTGCTGTGGGTGTCCCGCAAGGGTGCCATCAACGCCGAGGTCGGCGT 248 Query 54287 GCGTGGCCTCATCCCCGGCAGCATGGGCACGGCCTCCTACGTCGTCACCGGTAAAGGCAA 54346 | || || ||||| || ||||| ||||| || |||||||| |||| | || || Sbjct 247 CCCCGGGCTGATCCCGGGGTCGATGGGTACGGCGTCGTACGTCGTGTCCGGCAGGGGGAA 188 Query 54347 CCCCGAAGGGC---TGCATTCCGCGCCGCACGGCGCCGGCCGCCGCTACTCCCGCACCAA 54403 | | || | |||| | || |||||||| || ||||| |||||| || || || Sbjct 187 -CGAGCAGTCCCTGTGCAGT--GCACCGCACGGAGCAGGCCGGGCCTACTCGCGGACGAA 131 Query 54404 GGCACGCAAGCTGTTCACCGTCGACGACCTCGCAGACCG-TATGCGCGGCATCGAATACC 54462 ||| |||||| ||||| ||||||||||| || | | | ||| ||| ||||| |||| Sbjct 130 GGCGCGCAAGACCTTCACGGTCGACGACCT-GCGGGCGGCGATGGTCGGGATCGAGTACC 72 Query 54463 GGCACGGTGAGGCGTGGGTCGACGAGATTCCCGACGCCTACAAG 54506 | || ||||||| ||||||||||| |||| |||||||||| Sbjct 71 GCGACACGGAGGCGTTCGTCGACGAGATCCCCGGCGCCTACAAG 28 >seq231474 Length=516 Score = 197 bits (218), Expect = 6e-46 Identities = 353/512 (69%), Gaps = 35/512 (7%) Strand=Plus/Plus Query 53878 AGCACGGCCGGCTGTGGCTGTTCCTGCATTCCGGTTCACGCGGTGTCGGCAACAAGATCG 53937 |||| | ||| | |||||||||||||| ||||| || ||||| |||||||||||||||| Sbjct 2 AGCAGGACCGCGTCTGGCTGTTCCTGCACTCCGGCTCCCGCGGCGTCGGCAACAAGATCG 61 Query 53938 CCCAGAAGCACATCAAGATCGCGCAAGCCGAATGCGCCGAGCATGGTG--TCGAACTGCC 53995 ||||| | ||||||||| ||||| ||| || ||||| ||||| |||| ||||| Sbjct 62 CCCAGCACCACATCAAGGTCGCG--AGCGACCTGTGCCGACGCTGGTGGATCGACCTGCC 119 Query 53996 CGGCGGCAACAAGGATCTAGCCTACCTCGTCGAGGGCGAACCGTCGTTCGGCGCGTACCT 54055 || || || || |||||||| || ||||| || ||||| | || ||| | Sbjct 120 CG------ACCCCGACCTCGCCTACCTGGTGGAGGGGGACGACACGTTCTGGGCCTACAT 173 Query 54056 CGCTGAGCTGCGTTGGGCGCAACAGTTCGCGATGTTCAACCGCAACGAGATGATGGACCG 54115 | ||| |||| ||||| || || ||||| || |||||||| | ||||||||| |||| Sbjct 174 CCGCGAGATGCGGTGGGCCCAGCACTTCGCCCTGCTCAACCGCGAGGAGATGATGCACCG 233 Query 54116 GTACCGGCAAGCGTTCGCGCACTGGCTCGACATCGGTGTCGACGAGGCGCCAGTCGTCGA 54175 || | | | ||||| || ||| || |||| | || | | ||| Sbjct 234 CGTCCAGGAGGTCGTCGCGGACGAGCT-------GGGCGCGAC--CGTGCAGGCGGACGA 284 Query 54176 GATCGCCGGCGAACGCGTCAACGCGCACCACAACTACACCACCCAGGAGCACATCAACGG 54235 || ||| ||||| ||||||||||||||| | |||| | | ||| Sbjct 285 GA-------CGA-----TCAACTGCCACCACAACTACACCGAGCGCGAGCGCGTGTTCGG 332 Query 54236 TGAGCTGGTGTGGGTGACCCGCAAGGGCGCCATC--AGCGCGCAACTCGGTGAGCGTGGC 54293 | |||||||||| ||||||||||||| ||| ||| |||| ||||| || || Sbjct 333 TCGCGAGGTGTGGGTGTCCCGCAAGGGCGCGATCCGTGCGGGCAA--GGGTGATCGCGGG 390 Query 54294 CTCATCCCCGGCAGCATGGGCACGGCCTCCTACGTCGTCACCGGTAAAGGCAACCCCGAA 54353 || ||||||||| ||||||||||| || ||||||||||| || ||| |||| Sbjct 391 CTGATCCCCGGCTCGATGGGCACGGCGTCGTACGTCGTCACGGGCCTGGGCTACCCGCCG 450 Query 54354 GGGCTGCATTCCGCGCCGCACGGCGCCGGCCG 54385 |||| || || |||||||| |||||||| Sbjct 451 TCGCTGATGTCGGCCCCGCACGGGGCCGGCCG 482 >seq171065 Length=1298 Score = 134 bits (148), Expect = 6e-27 Identities = 131/169 (78%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 36550 ACCCGTCGCACTACACGTCGCACCCTAGTGGCGTGGAGTGCATCACGATCACCGAGCACA 36609 ||||| ||||||| | |||| || || ||||||||||||||| |||||||||||||| Sbjct 30 ACCCGCAGCACTACGTGACGCATCCCAGCGGCGTGGAGTGCATCGAGATCACCGAGCACA 89 Query 36610 TGGGCTTCAACCTCGGCAACGCCGTCAAATACATCTGGCGCTGCGACCTGAAACGCGACG 36669 |||||| | |||||||||| |||| ||| |||||||| |||| | || |||| | Sbjct 90 TGGGCTACCTGCTCGGCAACGTGATCAAGTACGTCTGGCGCGCCGACATCAAGGGCGAGG 149 Query 36670 CGATCGAGGATCTGAAAAAGGCCGCGTTCTACGTCGACCGTGAAATCGC 36718 | | ||||| |||| |||||| ||||||| | ||||| || ||||| Sbjct 150 CACTGGAGGACTTGAAGAAGGCCCGGTTCTACCTGGACCGGGAGATCGC 198 >seq74518 Length=2537 Score = 129 bits (142), Expect = 2e-25 Identities = 246/354 (69%), Gaps = 14/354 (4%) Strand=Plus/Minus Query 26157 GGCGAGCCGCATCCGAAGATGGCGGTGATGCTCGACGTCGAATCGTGGAACGGGCAGATC 26216 |||| | |||||| | | ||| | ||||||||||||||||||| | |||| | | Sbjct 1131 GGCGGACTGCATCCAAGGGTGGTGCTGATGCTCGACGTCGAATCCGG---CGGGAACCCC 1075 Query 26217 GGCGGTGACCAGTCGGCCGGCATCAACGCTGCGTTCGAGCAGATCGCCGGTTG-GCTGGG 26275 ||||| || ||||| | | |||||| | | | | | ||| || | || || Sbjct 1074 GGCGGCGATGCGTCGGACTGGATCAACCGCACCTACTGGAACCTCGTCGAATACGCCGGT 1015 Query 26276 CG-ACCGC-CGGCGAGTCATCGGCTACGGCAACACCGGTGACCTCAACGCGTTGTGGCCG 26333 | | ||| ||||| || |||||||||| ||| | | ||| || || | |||||| Sbjct 1014 GGCAACGCTCGGCGGGTGATCGGCTACGCGAACGCGGCCGACTTCGCCGGGATGTGGCGT 955 Query 26334 ---CGCAAACCTGAAGGTGTGCGGCTGGTCGTCGCCGGTTACGGCAAGCTTCCGA-CCTA 26389 ||| || | || |||| || ||| ||||||||||||| ||||| ||| Sbjct 954 GTTCGC---CCGGCGGGCCTGCGAATGATCGGCGCCGGTTACGGCCGCAATCCGAACCTG 898 Query 26390 TCCGGGCATGATCGCCCACCAATACACCGACGGGCAGGGCTACGGCGGTGGCCTGCCGGA 26449 |||| || |||||| ||||| ||||||||||| | ||| | |||||| || || || || Sbjct 897 GCCGGACA-GATCGCGCACCAGTACACCGACGGCCGGGGTTTCGGCGGCGGACTCCCCGA 839 Query 26450 AGGCGCGCCGCCGTTCGGGCGGTGCGACATGAACGCCGCAAACGGGCTGACCGC 26503 ||| || ||||||||||| |||||||||||| |||| |||| || || || Sbjct 838 AGGGGCACCGCCGTTCGGCAACTGCGACATGAACTCCGCCGACGGCCTCACGGC 785 >seq47396 Length=7053 Score = 87.8 bits (96), Expect = 7e-13 Identities = 54/58 (93%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 828 GTAGCTCAATTGGTAGAGCAGCGGTCTCCAAAACCGCCGGTTGCAGGTTCGAGTCCTG 885 ||||||||| ||| ||||||||||||||||||||||| |||||||||||| ||||||| Sbjct 4059 GTAGCTCAACTGGCAGAGCAGCGGTCTCCAAAACCGCAGGTTGCAGGTTCAAGTCCTG 4116 >seq20617 Length=36039 Score = 82.4 bits (90), Expect = 3e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 36558 CACTACACGTCGCACCCTAGTGGCGTGGAGTGCATCACGATCACCGAGCACATGGGCTTC 36617 |||||||| ||||| | ||||| | ||||||||| ||||||| |||||||| |||| Sbjct 28218 CACTACACCGCGCACGCCAGTGGGATCGAGTGCATCGAGATCACCAAGCACATGAACTTC 28159 Query 36618 AACCTCGGCAACGCCGTCAAATACATCTGGCGCTGCGACCTGAAACGCGACGCGATCGAG 36677 | | |||||||| | || |||||||||||| | || || ||||| | ||| Sbjct 28158 TGCTTGGGCAACGCGATGAAGTACATCTGGCGCGCTGGGCTCAAGGGCGACAGTGTGGAG 28099 Query 36678 GATCTGAAAAAGGCC 36692 |||||| |||||| Sbjct 28098 GATCTGCGCAAGGCC 28084 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 199713691826586