Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20pachinus_20[genbank_20GCA_5F900068735.1_202017-04-26] 277,083 sequences; 279,264,790 total letters Query= NC_024447.1 Length=282356 Score E Sequences producing significant alignments: (Bits) Value seq100037 96.9 6e-15 seq116274 93.3 8e-14 >seq100037 Length=1801 Score = 96.9 bits (106), Expect = 6e-15 Identities = 108/143 (76%), Gaps = 6/143 (4%) Strand=Plus/Minus Query 182419 CAGGTAGACGCTCACAATATAGTACCTTGTTGGGAAGCTTCTGACAAAGAAGAATACGGT 182478 |||||||| ||||||||| | || || ||||||| |||||||| ||| | ||||| Sbjct 277 CAGGTAGATGCTCACAATGTGGTGCCATGTTGGGTGGCTTCTGATAAACAGGAATATTCA 218 Query 182479 GCAAGAACTTTAAGAAAAAAGATATTTGATAAGTTATATGAATATATGACAGAATTTCCT 182538 |||||||| ||||||| || || | ||| ||| |||||||| | |||||||||||| Sbjct 217 GCAAGAACAATAAGAAATAAAATCAATTCTAAATTAGATGAATATCTTACAGAATTTCCT 158 Query 182539 ---GTTATACGTAAACACCCATA 182558 ||||| |||||| || || Sbjct 157 CCAGTTAT---TAAACATCCTTA 138 >seq116274 Length=581 Score = 93.3 bits (102), Expect = 8e-14 Identities = 114/153 (75%), Gaps = 2/153 (1%) Strand=Plus/Minus Query 143094 GGTATATGCGATAATTTACTAACATCTATAGTAAGAGCCTGGGATATAAATAAACCTCTT 143153 |||||||| || |||||| | |||| || ||| |||| ||||| | || || ||| Sbjct 401 GGTATATGTGACAATTTATTGACATGTACAGTCCGAGCGTGGGACTTCTCAAAGCCACTT 342 Query 143154 ATTTTTTGTCCCGCTATGAATAGCCTTATGTGGGAACATCCTATTACAGAAAAACATATA 143213 | || ||||| || ||||| | ||||||||||||||||||||| ||||| ||| Sbjct 341 GTATTCTGTCCTGCAATGAACACTAGAATGTGGGAACATCCTATTACATCTAAACAAATA 282 Query 143214 GATGCTTTAAAACATATGGG-TTTCATAGAAAT 143245 |||| |||||| || ||| ||||| |||||| Sbjct 281 GATGTTTTAAAGGATTGGGGCTTTCA-AGAAAT 250 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 900282201430880