Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20pachinus_20[genbank_20GCA_5F900068735.1_202017-04-26] 277,083 sequences; 279,264,790 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq13366 199 9e-46 seq26642 122 2e-22 >seq13366 Length=6323 Score = 199 bits (220), Expect = 9e-46 Identities = 433/644 (67%), Gaps = 13/644 (2%) Strand=Plus/Minus Query 110520 TCTTGCTTTCTTCTAGGAATTAACGATGATTCTATTGAAGGTATTTATGATGCTCTTAAA 110579 || || || ||| ||| || || || ||| ||||||||||||| |||| || | ||| Sbjct 2114 TCCTGTTTCCTTATAGCTATGAAAGACGATAGCATTGAAGGTATTTTTGATACTTTAAAA 2055 Query 110580 GAAACTGCTCTTATTTCTAAAAACTCTGGAGGAATTGGT----ATTCACGTT-CATGATA 110634 || ||| | ||||||||| |||| || || ||| || ||| || ||| | | Sbjct 2054 CAATGTGCATTAATTTCTAAATCTGCTGGTGGCATAGGTTTACATACACATTGCATCAGA 1995 Query 110635 TTCGCTCAAAAGGAGCAAATATCGCAACAGCGAAGGGTGCTTCAACTGGACTTGTTCCAA 110694 ||||| || | | || || | || || | |||| ||| || || |||| Sbjct 1994 ---GCTCAG--GGTTCTTACATAGCTGGCACTAATGGGGTCTCAAATGGTCTAGTGCCAA 1940 Query 110695 TGTTAAGAGTCTTCAACGACACTGCAAAATATGTGAATCAAGGTGGTAAGAGAAAT---G 110751 |||| ||||| | ||| | ||||| | |||||| |||||||||| || | | | | Sbjct 1939 TGTTGAGAGTGTATAACAATACTGCCAGATATGTAGATCAAGGTGGAAACAAACGTCCCG 1880 Query 110752 GCTCATTTGCTATCTATCTCGAACCTTGGCATTCAGATATATTTGAATTCTTAGAACTTC 110811 || ||||||| || ||| | || ||||||||| | ||||||||||||||||| || | Sbjct 1879 GCGCATTTGCAATTTATTTAGAGCCTTGGCATGCGGATATATTTGAATTCTTGGATTTAA 1820 Query 110812 GTAAAAATCAAGGATTTGAAGAACAAAGAGCACGTGATTTATTTTATGCAATGTGGATTT 110871 || || ||| |||||| ||||| | || | |||||||| | ||||| Sbjct 1819 AGAAGAACACAGGTAAGGAAGAAATGAGAGCTAGAGAACTGTTTTATGCTTTATGGATAC 1760 Query 110872 CAGATTTATTCATGAAACGTGTTCAAGAAAATGGCATGTGGTCTCTTATGTGTCCTCATC 110931 ||||| | || |||||| | || || | ||| | ||| ||| |||||||||||| Sbjct 1759 CAGATCTGTTTATGAAAAGAGTAGAAAAGGATGAAGTTTGGAGTCTCATGTGTCCTCATG 1700 Query 110932 GTTCTCCTGGTCTATCTGATGTATATGGAAAAGAGTTTGAAGACCTTTACGAAAAATATG 110991 || |||||| || |||| | |||| | || |||||||| || || | ||||||| Sbjct 1699 ATTGTCCTGGCCTCGCTGACTGCTTTGGAGAGGAATTTGAAGAACTATATGCCAAATATG 1640 Query 110992 AAAAAGAAGGCAAGTTTCGCAAACAAATTCCAGCTCAAGAACTTTGGTTCAAAATCCTTG 111051 || ||||| ||| |||||| | ||||||||| | ||| ||| | | Sbjct 1639 AAGAAGAAAAACGATTTATAAAACAAGTCAGAGCTCAAGAGTTATGGAAGTCAATTATAG 1580 Query 111052 AATCACAAGTTGAAACTGGAACTCCTTATATTTTGTATAAAGATCATATTAATCGCAAAT 111111 || | ||||| || ||||| || || || || |||||||| ||| | ||| | || Sbjct 1579 AAGCCCAAGTGGAGACTGGTACACCATACATGTTGTATAAGGATGCTTGTAACAGAAAGA 1520 Query 111112 CTAATCAAATGAATTTAGGAACAATTAAGTCTAGTAATTTGTGC 111155 |||||||| ||| | || || ||||| | ||| ||| | ||| Sbjct 1519 GTAATCAAAAAAATCTTGGCACTATTAAATGTAGCAATCTTTGC 1476 >seq26642 Length=11175 Score = 122 bits (134), Expect = 2e-22 Identities = 349/520 (67%), Gaps = 34/520 (7%) Strand=Plus/Minus Query 304982 CGCATTAAAGGTAAAGAGGGTCGTATTCGAGGTAATCTAATGGGAAAACGTGTTGATTTT 305041 ||| | ||||||||||| || | || |||| ||||| |||||||| || ||||| ||| Sbjct 10170 CGCTTAAAAGGTAAAGAAGGGAGAATCAGAGGAAATCTTATGGGAAAGCGAGTTGACTTT 10111 Query 305042 AGTGCAAGAAGTGTAATCACACCTGATTCTCAAATTA-GTCTTCATGAATTAGGAGTTCC 305100 ||| |||| |||||||| |||||| || || ||| || || || || ||||||| || Sbjct 10110 TCTGCCAGAACCGTAATCACTCCTGATCCT-AATTTACGTATTGATCAAGTAGGAGTGCC 10052 Query 305101 AATTGAAATTGCTTTAAAACTAACATTTCCAGAGAAAGTTA-ACGAGAAAAATATTAAAC 305159 |||||| ||| ||||||| ||||| ||| | || | || ||| | | Sbjct 10051 TCGCTCTATTGCTCAAAATTTAACATTCCCAGAACTAGTAACACCATTTAA-TATAGACC 9993 Query 305160 ATTTG-AGACGTTGTGTTCTTAATGGAAATAGCA-AGTATCCAGGTGCTCGTGCTGTTAT 305217 || || |||| |||| || |||||| ||| ||||||||||||| ||| Sbjct 9992 GAATGCAGGAGTTG-GTTCGTAGGGGAAAT-GCACAGTATCCAGGTGCAAAG-----TAT 9940 Query 305218 AAAACACAAGCAAAAGAAGACA--ATATCTTTGAACCATATCGATTTAAAACAATTCAGT 305275 | | | || || | ||| | ||| | ||| | || || ||||| || ||| Sbjct 9939 ATAGTCCGAGATAATGGAGAAAGAATAGATCTGAGG--TTTC-ATCCAAAACCAT-CAG- 9885 Query 305276 AAAATGCTTGAAATTAATGATATTGTTATCA--------GACATTTGAATGACAATGATT 305327 || ||| | ||| |||| |||| | | || |||| || | |||| Sbjct 9884 ---AT--TTGCATTTACA-ATATGGTTACAAAGTGGAGCGTCACTTGAGAGATGACGATT 9831 Query 305328 GGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGTCA 305387 |||| | |||||| | || ||| | |||| |||||| |||||||| ||| | || | Sbjct 9830 TGGTTATTTTCAATCGACAGCCAACTTTGCACAAAATGAGTATGATGGGTCACAGGGTGA 9771 Query 305388 AAGTATTATCTGGATTGACATTTCGATTAAATGTAAGTGCTTGTACGCCTTATAATGCGG 305447 ||||||| | | | |||||||| | ||| | ||| | |||| || ||||| | Sbjct 9770 AAGTATTGCCGTGGTCTACATTTCGTATGAATTTGAGTTGCACTTCGCCATACAATGCTG 9711 Query 305448 ATTTTGATGGAGATGAAATGAATATGCATGTACCTCAATC 305487 ||||||| || || ||||||||| | |||||||||||||| Sbjct 9710 ATTTTGACGGCGACGAAATGAATTTACATGTACCTCAATC 9671 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1182599465095763