Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heliconius_20pachinus_20[genbank_20GCA_5F900068735.1_202017-04-26]
277,083 sequences; 279,264,790 total letters
Query= NC_025115.1
Length=40002
Score E
Sequences producing significant alignments: (Bits) Value
seq253728 158 3e-34
seq268213 111 4e-20
seq276449 109 1e-19
seq56468 89.7 1e-13
seq125599 82.4 2e-11
>seq253728
Length=404
Score = 158 bits (174), Expect = 3e-34
Identities = 224/313 (72%), Gaps = 4/313 (1%)
Strand=Plus/Minus
Query 9492 TCACGATCTGGCGCCACTGACCGTCAGCGCAGCGCATGCCGTTGCGCAGCGCGGTGTGGC 9551
||||||| |||||||| | ||| | || | | ||||| |||||| | ||||
Sbjct 381 TCACGATGTGGCGCCAAATCCGGTCGGGGCCGACCGCGCCGTCCGCCAGCGCTGCATGGC 322
Query 9552 TCACGTCGATCTTGACCTGTTTGTCCTTGGCCTT--GCCGCGGTTGAACAGTGCGCCGGA 9609
||||||| | || ||| | | ||||| | || || |||||| | | ||||||
Sbjct 321 TCACGTCCAGCTCGACGCGATCTTCCTT--CTTTCGGCGCCGGTTGCGCCGCTCGCCGGT 264
Query 9610 CCAGAACGGGTAGGCCTCATGCGACAAGCTGGACGGCGTGGAGAAGTACGTTTGCCGCCA 9669
|||| | || ||||| ||| || | | || ||||| || ||||| |||| |||||
Sbjct 263 CCAGTATGGATAGGCGGGGTGCAGCACGGTCGATGGCGTCGAAAAGTAGGTTTTTCGCCA 204
Query 9670 GTGCTTGTGGATCGCCATGCCGGACGCGACCTTGCGCAGTTCCTGGAAGCGCGGCACCCA 9729
| |||||| ||||||| || || ||||||||| ||| |||| ||||| | |||||
Sbjct 203 CTTCTTGTGCGTCGCCATCCCCGAGGCGACCTTGTTCAGCTCCTCGAAGCTGTGAACCCA 144
Query 9730 GAAGTACTCGTCGAAGTACAGGTTGCCGTGGTAGCTCTGCGCGGTGCGGGCGTTGGTCCC 9789
|||| ||||||||||||| | |||||||| | |||||||||||| ||| || ||
Sbjct 143 GAAGAACTCGTCGAAGTAGAAATTGCCGTGCCGCCCCTGCGCGGTGCGAAAGTTCGTGCC 84
Query 9790 GAGGAAGTACAGC 9802
|||||||| ||||
Sbjct 83 GAGGAAGTGCAGC 71
>seq268213
Length=253
Score = 111 bits (122), Expect = 4e-20
Identities = 112/146 (77%), Gaps = 0/146 (0%)
Strand=Plus/Minus
Query 9650 GAGAAGTACGTTTGCCGCCAGTGCTTGTGGATCGCCATGCCGGACGCGACCTTGCGCAGT 9709
||||| ||||| | ||||| ||||||| |||||||| || ||||||||| |||
Sbjct 251 GAGAAATACGTGCGGGGCCAGCGCTTGTGCATCGCCATCGCGCTGGCGACCTTGTTGAGT 192
Query 9710 TCCTGGAAGCGCGGCACCCAGAAGTACTCGTCGAAGTACAGGTTGCCGTGGTAGCTCTGC 9769
|||| ||| | |||||| |||||||||| || | |||||||| |||| ||||
Sbjct 191 TCCTCGAACCCGTAGGTCCAGAAAAACTCGTCGAAATAGAAATTGCCGTGATAGCCCTGC 132
Query 9770 GCGGTGCGGGCGTTGGTCCCGAGGAA 9795
|||||||| || ||||||||||||||
Sbjct 131 GCGGTGCGCGCATTGGTCCCGAGGAA 106
>seq276449
Length=276
Score = 109 bits (120), Expect = 1e-19
Identities = 187/267 (70%), Gaps = 6/267 (2%)
Strand=Plus/Plus
Query 37197 ACGCTGATTGAATTTCTCTGGAAGCTGTGCGGCCGACGCGATTACGAGGGCTTCGACCCC 37256
|||||| | || ||||| |||||| | | ||| |||| |||||||||||||| ||
Sbjct 8 ACGCTGCTAGAGTTTCTGTGGAAGGTCTACGGGCGACCAAGCTACGAGGGCTTCGATCCA 67
Query 37257 AGCAAGTCGTCCCTGGCGGCG--CGCGCGCGGAACTTCGCGCAGGTGTCCAACCTTCCGG 37314
| |||| | | | |||| || |||||| | | | | |||||| ||| || || |
Sbjct 68 ACCAAG--GCCACCGGCGCCGGCATCGCGCGCACCATGGGGCAGGTCGGCAATCTCCCCG 125
Query 37315 TGGTGCTGATCGAGGCAGACCGGGGCGAGG-AGGGGGCCAAGCAGCGCGGCTTCGACTGG 37373
| ||||||||||||| || || || ||| | ||| || |||| ||||| |||
Sbjct 126 TCGTGCTGATCGAGGGCGATCGCAGCAAGGAAAACCCCCACGCCAAGCGG-TTCGAGTGG 184
Query 37374 GACGAACTGAAGACGGCCTACAACGGCCGCAGCACCCGCGCACGTGGCGTCAAGAATGGC 37433
||||| |||||||| || || ||||| ||| | |||| | || | || |||||||
Sbjct 185 GACGAGCTGAAGACCGCGTATAACGGTCGCGCCGTCCGCACCCGCGCGATCGCGAATGGC 244
Query 37434 GGGAACGAAACCTACGAACCCCCTTTC 37460
|| | ||||| | |||||| || |||
Sbjct 245 GGCATGGAAACGTTCGAACCGCCCTTC 271
>seq56468
Length=1893
Score = 89.7 bits (98), Expect = 1e-13
Identities = 419/662 (63%), Gaps = 60/662 (9%)
Strand=Plus/Minus
Query 11911 CGACTTCCAGACTCGGATCCGCGACGCCATCATCAAGCGCCA-GGCGCTGGATCGCATCA 11969
||| |||||||| | | | ||||| || ||||||| |||||| ||| | || |||||
Sbjct 805 CGATTTCCAGACCCTGCTGCGCGATGCGATCATCA-GCGCCAAGGCCGTCGACATCATCA 747
Query 11970 TGATCGGCTTCAACGGTGTCAGCCGAGCCGCCACGTCCAATCGGGTGGTCAACCCGATGC 12029
||||||||||||||| || | |||| || | | ||| | | | ||| | |
Sbjct 746 CGATCGGCTTCAACGGCGTGAAGGTAGCCAAGGATACCTACCCGGTCGCCTATCCGCTCC 687
Query 12030 TCCAGGACGTGAACAAAGGCTGGCTGCAGAACCTGCGCGAACAGGCGC-----CGCAGCG 12084
| |||||||| ||||| |||||||| ||| || | |||||| | || | ||| ||
Sbjct 686 TTCAGGACGTCAACAAGGGCTGGCTCCAGCACATCCGCGAAGACGCCCCGGAACGCCACG 627
Query 12085 CGTCATG----GA--GGAAGGCAAAAA--------AGCGG--------------CCGGCA 12116
|| || | || ||||||| ||| | ||| | |||
Sbjct 626 CGGCAGGCGGTGACCTGAAGGCAGAAACCCGAGTGAACGGCGTCGTGACCGTACCAGGCG 567
Query 12117 AGATCATCGTCGGCGCGGGTG-----GG----------GACTACGGCAACCTGGACGCCC 12161
|||| |||||| || |||| || || |||| |||| | |||||
Sbjct 566 CGATCTACGTCGGGGCCGGTGAAGTCGGTGTCGAGGTCGATTACGTCAACATCGACGCAA 507
Query 12162 TGGTGTTCGACGTCGTGAACCAGCTGGTCGAGCCGTGGTACGCCGAGGATCCGGAGCTGG 12221
||||||||| || | | | | |||| ||| | ||| ||||||| | || ||||
Sbjct 506 TGGTGTTCGCCGGCATCGAACTGCTGCACGA---GAACTACCGCGAGGATACAGACCTGG 450
Query 12222 TCGTGCTGTGTGGTCGCAACCTGCTGGCCGACAAGTACTTCCCGCTGGTGAACAAAGACC 12281
||| | | || ||| || | ||||||||| ||| || | || ||| |
Sbjct 449 TCGCGATCGTCGGCCGCGCGCTCGTCAACGACAAGTATTTCTCGATCGTCAACGCATCGG 390
Query 12282 GCGACCCGG---TCCAGCAGATCGCGGCCGACCTCATCATCAGCCAGAAGCGCATCGGCA 12338
||||| || | ||||| | ||| ||| || | | | | ||| ||||||
Sbjct 389 GCGACAAGGCAACCGAGCAGCTGGCGCGTGACGTCCTGCTGTCCGACAAGAAGATCGGCG 330
Query 12339 ACCTGCAGGCGGTGCGCGTGCCGTACTTCCCGGCGAATGGCCTGCTGGTGACGCGCCTGG 12398
|| ||||| ||||||||| | ||||| || | | | ||| | || || |
Sbjct 329 GTTTGACCGCGGTCCGCGTGCCGAAGTTCCCAAAGAGCGCCATCCTGATCACCACGCTCG 270
Query 12399 ACAACCTGTCCATCTACTACCAG--GAGAACGCGCGCCGTCGCACGATCCTGGACAACGC 12456
||||||||| |||| | ||| | || || | ||||||| |||| |||||||||
Sbjct 269 CCAACCTGTCGGTCTATGAACAGATCGGCAC-CGAG-CGTCGCAAGATCGAGGACAACGC 212
Query 12457 GAAGCGCGATCGCATCGAGAACTACGAGTCGAGCAACGACGCGTACGTGATCGAAGACCT 12516
|||||||| | ||||||||||||||| |||| |||| || || |||||||| |
Sbjct 211 CAAGCGCGACCAGATCGAGAACTACGAGAGCGTCAACCACGCCTATGTCGTCGAAGACAT 152
Query 12517 GG 12518
||
Sbjct 151 GG 150
>seq125599
Length=907
Score = 82.4 bits (90), Expect = 2e-11
Identities = 273/413 (66%), Gaps = 14/413 (3%)
Strand=Plus/Plus
Query 9251 GGGTCGTAGCCGACCCACACCGGCCGGTTGCCGAACGGCCGCGGCGCGAACGGCCGGAAG 9310
|| ||||||||| ||||||| || || | |||| |||| || | || ||| ||||
Sbjct 273 GGATCGTAGCCGGCCCACACGGGGCGCTCGCCGTACGGGCGTGCGGCCTCCGGATTGAAG 332
Query 9311 TCCTCCCATACTTCCCAGGTGTCCACCATCCCGCGCATGAGCA--TCGA-GAGCGGAAAC 9367
|| ||| | ||| || ||| || || || ||| || ||| || | | |||
Sbjct 333 TCGGTCCAGTCCTCCATGGAGTCG--CAGCC-GCATTTGATCAGGTCGTTGAACCGGAAC 389
Query 9368 ACGGACGCGTTGTCGTCGATGAACGCGCACATCAGCAGGTTGGCGAAATCGAGTT-CGCT 9426
||||| | ||||||||| ||| |||| | || ||||| || ||| | |||
Sbjct 390 GCGGACAGGCTGTCGTCGACGAAGTCGCAGTCGAATAGATTGGCAAACTCGTCTGGCGCA 449
Query 9427 GTACTCCAGCCGCAACTGGTCGATGTCGAACAGGTTGCAGCCGCCGCGCAGCGCGTCCTC 9486
|| || |||| || ||||||||||||||||| ||| || || | || ||
Sbjct 450 -TATTCGTCGCGCAGCTCGTCGATGTCGAACAGGTCGCAACCCGCGGCCTCGGCATCGGT 508
Query 9487 TACCGTCACGATCTGGCGCCACTGACCGTCAG--CGCAGCGCATGCCGTTGCGCAGCGCG 9544
| ||| ||||| || ||||| | || | | | |||| ||||| |||||||
Sbjct 509 GATCGTGACGATATGCCGCCAGATGCGATCCGGTCCCTGCGC--GCCGTCCTTCAGCGCG 566
Query 9545 GTGTGGCTCACGTCGATCTTGACCTGTTTGTCCTTGGCCTTGCCG-CGGTTGAACAGTGC 9603
|||||| || ||||||| ||| | | | | |||| | |||| |||||| | | |
Sbjct 567 TCGTGGCTGACATCGATCTCGACGCGCTCGGCTTTGG-CGCGCCGCCGGTTGCGCCGCTC 625
Query 9604 GCCGGACCAGAACGGGTAGGCCTCATGCGACAAGCTGGACGGCGTGGAGAAGT 9656
|| | |||| |||| ||||| |||||| | | |||||||| |||||||
Sbjct 626 ACCCGTCCAGTACGGATAGGCGGCATGCGCGATCGTCGACGGCGTCGAGAAGT 678
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 127464012889544
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |