Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20pachinus_20[genbank_20GCA_5F900068735.1_202017-04-26] 277,083 sequences; 279,264,790 total letters Query= NC_025115.1 Length=40002 Score E Sequences producing significant alignments: (Bits) Value seq253728 158 3e-34 seq268213 111 4e-20 seq276449 109 1e-19 seq56468 89.7 1e-13 seq125599 82.4 2e-11 >seq253728 Length=404 Score = 158 bits (174), Expect = 3e-34 Identities = 224/313 (72%), Gaps = 4/313 (1%) Strand=Plus/Minus Query 9492 TCACGATCTGGCGCCACTGACCGTCAGCGCAGCGCATGCCGTTGCGCAGCGCGGTGTGGC 9551 ||||||| |||||||| | ||| | || | | ||||| |||||| | |||| Sbjct 381 TCACGATGTGGCGCCAAATCCGGTCGGGGCCGACCGCGCCGTCCGCCAGCGCTGCATGGC 322 Query 9552 TCACGTCGATCTTGACCTGTTTGTCCTTGGCCTT--GCCGCGGTTGAACAGTGCGCCGGA 9609 ||||||| | || ||| | | ||||| | || || |||||| | | |||||| Sbjct 321 TCACGTCCAGCTCGACGCGATCTTCCTT--CTTTCGGCGCCGGTTGCGCCGCTCGCCGGT 264 Query 9610 CCAGAACGGGTAGGCCTCATGCGACAAGCTGGACGGCGTGGAGAAGTACGTTTGCCGCCA 9669 |||| | || ||||| ||| || | | || ||||| || ||||| |||| ||||| Sbjct 263 CCAGTATGGATAGGCGGGGTGCAGCACGGTCGATGGCGTCGAAAAGTAGGTTTTTCGCCA 204 Query 9670 GTGCTTGTGGATCGCCATGCCGGACGCGACCTTGCGCAGTTCCTGGAAGCGCGGCACCCA 9729 | |||||| ||||||| || || ||||||||| ||| |||| ||||| | ||||| Sbjct 203 CTTCTTGTGCGTCGCCATCCCCGAGGCGACCTTGTTCAGCTCCTCGAAGCTGTGAACCCA 144 Query 9730 GAAGTACTCGTCGAAGTACAGGTTGCCGTGGTAGCTCTGCGCGGTGCGGGCGTTGGTCCC 9789 |||| ||||||||||||| | |||||||| | |||||||||||| ||| || || Sbjct 143 GAAGAACTCGTCGAAGTAGAAATTGCCGTGCCGCCCCTGCGCGGTGCGAAAGTTCGTGCC 84 Query 9790 GAGGAAGTACAGC 9802 |||||||| |||| Sbjct 83 GAGGAAGTGCAGC 71 >seq268213 Length=253 Score = 111 bits (122), Expect = 4e-20 Identities = 112/146 (77%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 9650 GAGAAGTACGTTTGCCGCCAGTGCTTGTGGATCGCCATGCCGGACGCGACCTTGCGCAGT 9709 ||||| ||||| | ||||| ||||||| |||||||| || ||||||||| ||| Sbjct 251 GAGAAATACGTGCGGGGCCAGCGCTTGTGCATCGCCATCGCGCTGGCGACCTTGTTGAGT 192 Query 9710 TCCTGGAAGCGCGGCACCCAGAAGTACTCGTCGAAGTACAGGTTGCCGTGGTAGCTCTGC 9769 |||| ||| | |||||| |||||||||| || | |||||||| |||| |||| Sbjct 191 TCCTCGAACCCGTAGGTCCAGAAAAACTCGTCGAAATAGAAATTGCCGTGATAGCCCTGC 132 Query 9770 GCGGTGCGGGCGTTGGTCCCGAGGAA 9795 |||||||| || |||||||||||||| Sbjct 131 GCGGTGCGCGCATTGGTCCCGAGGAA 106 >seq276449 Length=276 Score = 109 bits (120), Expect = 1e-19 Identities = 187/267 (70%), Gaps = 6/267 (2%) Strand=Plus/Plus Query 37197 ACGCTGATTGAATTTCTCTGGAAGCTGTGCGGCCGACGCGATTACGAGGGCTTCGACCCC 37256 |||||| | || ||||| |||||| | | ||| |||| |||||||||||||| || Sbjct 8 ACGCTGCTAGAGTTTCTGTGGAAGGTCTACGGGCGACCAAGCTACGAGGGCTTCGATCCA 67 Query 37257 AGCAAGTCGTCCCTGGCGGCG--CGCGCGCGGAACTTCGCGCAGGTGTCCAACCTTCCGG 37314 | |||| | | | |||| || |||||| | | | | |||||| ||| || || | Sbjct 68 ACCAAG--GCCACCGGCGCCGGCATCGCGCGCACCATGGGGCAGGTCGGCAATCTCCCCG 125 Query 37315 TGGTGCTGATCGAGGCAGACCGGGGCGAGG-AGGGGGCCAAGCAGCGCGGCTTCGACTGG 37373 | ||||||||||||| || || || ||| | ||| || |||| ||||| ||| Sbjct 126 TCGTGCTGATCGAGGGCGATCGCAGCAAGGAAAACCCCCACGCCAAGCGG-TTCGAGTGG 184 Query 37374 GACGAACTGAAGACGGCCTACAACGGCCGCAGCACCCGCGCACGTGGCGTCAAGAATGGC 37433 ||||| |||||||| || || ||||| ||| | |||| | || | || ||||||| Sbjct 185 GACGAGCTGAAGACCGCGTATAACGGTCGCGCCGTCCGCACCCGCGCGATCGCGAATGGC 244 Query 37434 GGGAACGAAACCTACGAACCCCCTTTC 37460 || | ||||| | |||||| || ||| Sbjct 245 GGCATGGAAACGTTCGAACCGCCCTTC 271 >seq56468 Length=1893 Score = 89.7 bits (98), Expect = 1e-13 Identities = 419/662 (63%), Gaps = 60/662 (9%) Strand=Plus/Minus Query 11911 CGACTTCCAGACTCGGATCCGCGACGCCATCATCAAGCGCCA-GGCGCTGGATCGCATCA 11969 ||| |||||||| | | | ||||| || ||||||| |||||| ||| | || ||||| Sbjct 805 CGATTTCCAGACCCTGCTGCGCGATGCGATCATCA-GCGCCAAGGCCGTCGACATCATCA 747 Query 11970 TGATCGGCTTCAACGGTGTCAGCCGAGCCGCCACGTCCAATCGGGTGGTCAACCCGATGC 12029 ||||||||||||||| || | |||| || | | ||| | | | ||| | | Sbjct 746 CGATCGGCTTCAACGGCGTGAAGGTAGCCAAGGATACCTACCCGGTCGCCTATCCGCTCC 687 Query 12030 TCCAGGACGTGAACAAAGGCTGGCTGCAGAACCTGCGCGAACAGGCGC-----CGCAGCG 12084 | |||||||| ||||| |||||||| ||| || | |||||| | || | ||| || Sbjct 686 TTCAGGACGTCAACAAGGGCTGGCTCCAGCACATCCGCGAAGACGCCCCGGAACGCCACG 627 Query 12085 CGTCATG----GA--GGAAGGCAAAAA--------AGCGG--------------CCGGCA 12116 || || | || ||||||| ||| | ||| | ||| Sbjct 626 CGGCAGGCGGTGACCTGAAGGCAGAAACCCGAGTGAACGGCGTCGTGACCGTACCAGGCG 567 Query 12117 AGATCATCGTCGGCGCGGGTG-----GG----------GACTACGGCAACCTGGACGCCC 12161 |||| |||||| || |||| || || |||| |||| | ||||| Sbjct 566 CGATCTACGTCGGGGCCGGTGAAGTCGGTGTCGAGGTCGATTACGTCAACATCGACGCAA 507 Query 12162 TGGTGTTCGACGTCGTGAACCAGCTGGTCGAGCCGTGGTACGCCGAGGATCCGGAGCTGG 12221 ||||||||| || | | | | |||| ||| | ||| ||||||| | || |||| Sbjct 506 TGGTGTTCGCCGGCATCGAACTGCTGCACGA---GAACTACCGCGAGGATACAGACCTGG 450 Query 12222 TCGTGCTGTGTGGTCGCAACCTGCTGGCCGACAAGTACTTCCCGCTGGTGAACAAAGACC 12281 ||| | | || ||| || | ||||||||| ||| || | || ||| | Sbjct 449 TCGCGATCGTCGGCCGCGCGCTCGTCAACGACAAGTATTTCTCGATCGTCAACGCATCGG 390 Query 12282 GCGACCCGG---TCCAGCAGATCGCGGCCGACCTCATCATCAGCCAGAAGCGCATCGGCA 12338 ||||| || | ||||| | ||| ||| || | | | | ||| |||||| Sbjct 389 GCGACAAGGCAACCGAGCAGCTGGCGCGTGACGTCCTGCTGTCCGACAAGAAGATCGGCG 330 Query 12339 ACCTGCAGGCGGTGCGCGTGCCGTACTTCCCGGCGAATGGCCTGCTGGTGACGCGCCTGG 12398 || ||||| ||||||||| | ||||| || | | | ||| | || || | Sbjct 329 GTTTGACCGCGGTCCGCGTGCCGAAGTTCCCAAAGAGCGCCATCCTGATCACCACGCTCG 270 Query 12399 ACAACCTGTCCATCTACTACCAG--GAGAACGCGCGCCGTCGCACGATCCTGGACAACGC 12456 ||||||||| |||| | ||| | || || | ||||||| |||| ||||||||| Sbjct 269 CCAACCTGTCGGTCTATGAACAGATCGGCAC-CGAG-CGTCGCAAGATCGAGGACAACGC 212 Query 12457 GAAGCGCGATCGCATCGAGAACTACGAGTCGAGCAACGACGCGTACGTGATCGAAGACCT 12516 |||||||| | ||||||||||||||| |||| |||| || || |||||||| | Sbjct 211 CAAGCGCGACCAGATCGAGAACTACGAGAGCGTCAACCACGCCTATGTCGTCGAAGACAT 152 Query 12517 GG 12518 || Sbjct 151 GG 150 >seq125599 Length=907 Score = 82.4 bits (90), Expect = 2e-11 Identities = 273/413 (66%), Gaps = 14/413 (3%) Strand=Plus/Plus Query 9251 GGGTCGTAGCCGACCCACACCGGCCGGTTGCCGAACGGCCGCGGCGCGAACGGCCGGAAG 9310 || ||||||||| ||||||| || || | |||| |||| || | || ||| |||| Sbjct 273 GGATCGTAGCCGGCCCACACGGGGCGCTCGCCGTACGGGCGTGCGGCCTCCGGATTGAAG 332 Query 9311 TCCTCCCATACTTCCCAGGTGTCCACCATCCCGCGCATGAGCA--TCGA-GAGCGGAAAC 9367 || ||| | ||| || ||| || || || ||| || ||| || | | ||| Sbjct 333 TCGGTCCAGTCCTCCATGGAGTCG--CAGCC-GCATTTGATCAGGTCGTTGAACCGGAAC 389 Query 9368 ACGGACGCGTTGTCGTCGATGAACGCGCACATCAGCAGGTTGGCGAAATCGAGTT-CGCT 9426 ||||| | ||||||||| ||| |||| | || ||||| || ||| | ||| Sbjct 390 GCGGACAGGCTGTCGTCGACGAAGTCGCAGTCGAATAGATTGGCAAACTCGTCTGGCGCA 449 Query 9427 GTACTCCAGCCGCAACTGGTCGATGTCGAACAGGTTGCAGCCGCCGCGCAGCGCGTCCTC 9486 || || |||| || ||||||||||||||||| ||| || || | || || Sbjct 450 -TATTCGTCGCGCAGCTCGTCGATGTCGAACAGGTCGCAACCCGCGGCCTCGGCATCGGT 508 Query 9487 TACCGTCACGATCTGGCGCCACTGACCGTCAG--CGCAGCGCATGCCGTTGCGCAGCGCG 9544 | ||| ||||| || ||||| | || | | | |||| ||||| ||||||| Sbjct 509 GATCGTGACGATATGCCGCCAGATGCGATCCGGTCCCTGCGC--GCCGTCCTTCAGCGCG 566 Query 9545 GTGTGGCTCACGTCGATCTTGACCTGTTTGTCCTTGGCCTTGCCG-CGGTTGAACAGTGC 9603 |||||| || ||||||| ||| | | | | |||| | |||| |||||| | | | Sbjct 567 TCGTGGCTGACATCGATCTCGACGCGCTCGGCTTTGG-CGCGCCGCCGGTTGCGCCGCTC 625 Query 9604 GCCGGACCAGAACGGGTAGGCCTCATGCGACAAGCTGGACGGCGTGGAGAAGT 9656 || | |||| |||| ||||| |||||| | | |||||||| ||||||| Sbjct 626 ACCCGTCCAGTACGGATAGGCGGCATGCGCGATCGTCGACGGCGTCGAGAAGT 678 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 127464012889544