Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20pachinus_20[genbank_20GCA_5F900068735.1_202017-04-26] 277,083 sequences; 279,264,790 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq28654 125 5e-24 seq133356 91.5 1e-13 seq27511 82.4 5e-11 seq21024 82.4 5e-11 >seq28654 Length=3315 Score = 125 bits (138), Expect = 5e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | | ||| || ||||| || ||||| |||||||| || || || || || Sbjct 2388 CCACCACGAAGACGCAATACCAAGTGAAGAGTAGATTCTTTTTGAATATTATAGTCAGAA 2447 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || |||||| |||| |||||||| ||||| || ||||||||||| || |||||| | || Sbjct 2448 AGAGTGCGTCCGTCTTCCAATTGCTTTCCAGCGAAAATCAAACGTTGTTGATCTGGAGGA 2507 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||| ||||| |||||| | || |||| || | || ||| | ||| || Sbjct 2508 ATGCCTTCCTTGTCTTGAATTTT-GGCTTTTACATTTTCAATAGTATCGGAAGGTTCAAC 2566 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | || || |||||||| || | ||||| |||||||||||||| Sbjct 2567 TTCCAAAGTAATGGTTTTACCCGTAAGTGTTTTCACAAAGATCTGCAT 2614 Score = 111 bits (122), Expect = 1e-19 Identities = 164/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||| |||| |||||||| ||||| || | |||| |||||| || || || || || || Sbjct 791 ACCTCCTCGTAAACGTAATACCAAGTGCAAAGTGGACTCTTTCTGAATATTATAGTCAGA 850 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 ||| || || | || |||| || || || || ||||| | ||| || |||||| | || Sbjct 851 GAGAGTACGGCCATCCTCCAGCTGCTTGCCAGCGAAAATGAGACGTTGTTGATCTGGGGG 910 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCACG-GTGTCGCTTGATTCCA 33700 | ||| |||||||| || || ||| ||||| ||| ||||| | ||| | Sbjct 911 AATACCCTCTTTGTCTTGGATCTTAGCTTT-AACATTTTCAATAGTGTCTGAGGGTTCAA 969 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | ||||| ||||| ||||| | || |||||||||||||||||| Sbjct 970 CTTCTAATGTGATAGTTTTCCCTGTCAGTGTCTTTACAAAGATCTGCATA 1019 Score = 105 bits (116), Expect = 4e-18 Identities = 163/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||||| || ||| | || | ||| || || ||| ||||| |||||||| || || Sbjct 1703 ACCACCTCGCAGACGCAGTACTAGATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCAGA 1762 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 ||| ||||| | || |||||||| || || ||||| || | |||||||||||| | || Sbjct 1763 GAGGGTGCGACCATCTTCCAATTGCTTACCAGCAAAGATAAGACGCTGCTGATCAGGTGG 1822 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | || |||||||| ||||| | || |||| || | || || | ||||| Sbjct 1823 GATGCCCTCTTTGTCTTGGATTTT-AGCTTTTACATTTTCAATAGTATCAGAGGGTTCCA 1881 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | || || || || || |||| ||||| ||||| ||||||||| Sbjct 1882 CTTCCAGGGTAATGGTCTTTCCAGTTAGGGTTTTAACAAAAATCTGCATA 1931 Score = 105 bits (116), Expect = 4e-18 Identities = 163/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||||||||| ||||| | || || || | ||| |||||||| |||||||| || || Sbjct 1931 ACCACCTCTTAAACGAAGTACTAAGTGCAAAGTAGATTCTTTTTGGATGTTGTAGTCAGA 1990 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 ||||| || | || || ||||| || || |||||||| | ||| || ||||| | || Sbjct 1991 CAGTGTACGACCATCTTCTAATTGCTTGCCCGCAAAAATAAGACGTTGTTGATCCGGAGG 2050 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||||||||||| ||||| |||| |||| || | ||||| | ||| | Sbjct 2051 AATGCCTTCTTTGTCTTGGATTTTAGCTTTC-ACATTTTCAATTGTGTCAGAAGCTTCAA 2109 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | || || ||||| || || | ||||| |||||||| |||||| Sbjct 2110 CTTCTAAAGTAATTGTTTTTCCAGTGAGTGTTTTAACAAAGATTTGCATA 2159 Score = 95.1 bits (104), Expect = 8e-15 Identities = 152/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 33535 CGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCG 33594 || || || |||||||| || || ||||| || || ||||| || | ||| || | Sbjct 2172 CGCAATACTAAATGTAGGGTAGATTCCTTTTGAATATTATAATCAGATAATGTACGGCCA 2231 Query 33595 TCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTG 33654 || |||| ||||||||| |||||||| | | ||| |||||| | || | ||| |||||| Sbjct 2232 TCTTCCAGTTGTTTTCCAGCAAAAATAAGCCTCTGTTGATCTGGGGGAATACCCTCTTTG 2291 Query 33655 TCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGAT 33713 || || || |||| ||| || | |||||| | || || || | ||||| Sbjct 2292 TCTTGGATCTTTGCCTTCA-CATTTTCGATAGTGTCGGACGGCTCTACCTCTAAAGTGAT 2350 Query 33714 CGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 ||||| ||||| | || || |||||||||||||| Sbjct 2351 GGTTTTTCCTGTAAGAGTCTTAACAAAGATCTGCAT 2386 Score = 82.4 bits (90), Expect = 5e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | | ||| | || ||||| | ||| |||||||| ||||| || || || Sbjct 564 CCACCACGAAGACGAAGTACTAAATGCAAAGTAGATTCTTTTTGGATGTTATAGTCCGAC 623 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || || || ||||| || ||||| || | |||||| || ||| | || Sbjct 624 AGAGTGCGGCCATCCTCTAACTGTTTACCAGCAAAGATGAGACGCTGTTGGTCTGGGGGA 683 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || || ||||| || || || ||||| || | |||||| || ||||| Sbjct 684 ATGCCCTCCTTGTCTTGGATCTTAGCCTT-AACATTTTCGATAGTGTCGGATGGCTCCAC 742 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 || | ||||| || || || || | || || ||||||||||||||| Sbjct 743 CTCCAAAGTGATGGTCTTCCCAGTAAGAGTCTTAACAAAGATCTGCATA 791 >seq133356 Length=434 Score = 91.5 bits (100), Expect = 1e-13 Identities = 110/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 70291 TTTTTAACACCCGAAACAATGGCCAGATGTGGATTTTATTATTTGAAACGAGGTGATGAA 70350 |||||| ||||||| || | || || ||| || |||||| || || || |||||| Sbjct 251 TTTTTATTACCCGAATCACTCGCGAGGAATGGCTTCTATTATCTGGGCCGCGGCGATGAA 192 Query 70351 GTTAGATGTGCCTATTGTAAAGTGGAAATAATGCAATGGAAAGAGGGTGATGATCCATCC 70410 || | || || | ||||||||| ||||| ||| ||||| | ||| || ||||| || Sbjct 191 GTACGCTGCGCGTTTTGTAAAGTAGAAATTATGAAATGGGTTGCGGGCGACGATCCCGCC 132 Query 70411 GCCGACCACAAGCGATGGGCGCCTCAATGC 70440 |||||| |||| ||||||||||| ||| Sbjct 131 AAGGACCACCAGCGCTGGGCGCCTCAGTGC 102 >seq27511 Length=800 Score = 82.4 bits (90), Expect = 5e-11 Identities = 112/155 (72%), Gaps = 1/155 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 |||||||||| |||| || | || | ||| ||||| || ||||||||||| || Sbjct 215 CCACCTCTCAGCCGTAGTACTAGGTGCAAAGTAGATTCTTTCTGAATGTTGTAATCAGAT 156 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 ||||||||| | || || | || ||||| |||||||| | | ||||||||| | || Sbjct 155 AGTGTGCGTCCATCTTCAAGCTGCTTTCCAGCAAAAATAAGTCTTTGCTGATCTGGGGGA 96 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACAT 33677 | || ||||| || |||||| || || ||||| Sbjct 95 ATTCCCTCTTTATCCTGAATTTT-TGCTTTAACAT 62 >seq21024 Length=8359 Score = 82.4 bits (90), Expect = 5e-11 Identities = 80/103 (78%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 33521 CACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGG 33580 ||||||||| | || | ||| || ||||| ||| || ||||| |||||||| |||| Sbjct 2851 CACCACCTCGGAGTCGGAGCACTAAGTGTAGTGTGGATTCCTTTTGAATGTTGTAGTCGG 2792 Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAA 33623 |||| || || | || ||||||||||| |||||||| ||||| Sbjct 2791 AGAGGGTTCGGCCATCTTCCAATTGTTTACCGGCAAAGATCAA 2749 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 327593983335360