Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20pachinus_20[genbank_20GCA_5F900068735.1_202017-04-26] 277,083 sequences; 279,264,790 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq76306 145 2e-29 seq27511 138 3e-27 seq28654 123 6e-23 >seq76306 Length=316 Score = 145 bits (160), Expect = 2e-29 Identities = 151/198 (76%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| | || || ||||| ||||| |||||||||||| |||||| ||| ||||| Sbjct 72 AAAACTTTAACTGGGAAAACCATCACATTGGAAGTGGAAGCTTCTGATACAATCGAAAAC 131 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 |||||| |||||||||||| || ||||| ||| || || |||||||| || ||| Sbjct 132 GTAAAGGCAAAGATTCAAGACAAGGAAGGCATTCCTCCAGATCAACAAAGACTGATTTTC 191 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||||||||| |||||||||| | || ||| | || || || ||||||| || ||| Sbjct 192 GCCGGAAAGCAACTGGAAGATGGGCGCACATTGTCAGACTATAATATCCAGAAGGAATCT 251 Query 206365 ACTCTTCACCTTGTTTTG 206382 ||| | ||| | |||||| Sbjct 252 ACTTTGCACTTAGTTTTG 269 Score = 95.1 bits (104), Expect = 3e-14 Identities = 79/97 (81%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 204760 CAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATC 204819 |||||| | ||| | |||||| || ||||||| ||||||||| | ||| || | ||||| Sbjct 269 CAAAACTAAGTGCAAAGTAGATTCCTTCTGGATATTATAGTCTGACAATGTGCGCCCATC 210 Query 204820 TTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 |||||| |||||||||||||| || || | ||||||| Sbjct 209 TTCCAGTTGCTTTCCGGCGAAAATCAGTCTTTGTTGA 173 >seq27511 Length=800 Score = 138 bits (152), Expect = 3e-27 Identities = 149/196 (76%), Gaps = 1/196 (1%) Strand=Plus/Plus Query 206179 TTTTGCAAA-ACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGT 206237 ||||| ||| || || || || ||||| |||||||||||||||||| |||||| ||| | Sbjct 225 TTTTGTAAAGACACTGACTGGCAAAACTATCACTTTGGAAGTGGAAGCTTCTGATACAAT 284 Query 206238 CGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACT 206297 ||| || ||| |||||||||||| |||||||| ||| || ||| || || || Sbjct 285 AGAAAATGTTAAGGCAAAGATTCAAGACAAAGAAGGCATTCCTCCTGACCAACAGAGGCT 344 Query 206298 TATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAA 206357 ||| || || ||||| ||| ||||||||||| | || ||| | ||||| || | ||||| Sbjct 345 TATTTTTGCAGGAAAACAGCTGGAAGATGGACGTACATTGTCAGATTATAATATTCAGAA 404 Query 206358 AGAGTCTACTCTTCAC 206373 || |||||| | ||| Sbjct 405 GGAATCTACTTTGCAC 420 Score = 129 bits (142), Expect = 1e-24 Identities = 147/195 (75%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || || || |||||||||||||| || |||||| ||| | ||| Sbjct 4 AAGACACTGACTGGCAAGACTATCACTTTGGAAGTTGAGCCTTCTGATACAATTGAAAAT 63 Query 206245 G-TAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 | |||||||||| ||||| || ||||| |||||| || || ||||||||||| || Sbjct 64 GTTAAAGCAAAA-ATTCAGGATAAAGAGGGAATTCCCCCAGATCAGCAAAGACTTATTTT 122 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 || ||||||||| | ||||||||| | || | | ||||||||| | |||||||| || Sbjct 123 TGCTGGAAAGCAGCTTGAAGATGGACGCACACTATCTGATTACAACATTCAGAAAGAATC 182 Query 206364 TACTCTTCACCTTGT 206378 |||| | ||||| || Sbjct 183 TACTTTGCACCTAGT 197 Score = 111 bits (122), Expect = 4e-19 Identities = 146/201 (73%), Gaps = 1/201 (0%) Strand=Plus/Plus Query 206179 TTTTGCAAA-ACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGT 206237 ||||| ||| || || || || || || |||||||||||||||||| |||||| ||| | Sbjct 453 TTTTGTAAAGACACTGACTGGCAAGACTATCACTTTGGAAGTGGAAGCTTCTGATACAAT 512 Query 206238 CGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACT 206297 ||| || ||| || ||||| || ||||| || ||| || || |||||||| Sbjct 513 TGAAAATGTTAAGGCGAAAATTCAGGATAAAGAGGGTATTCCCCCAGATCAGCAAAGACT 572 Query 206298 TATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAA 206357 ||| || || ||||||||| | ||||||||| | || | | || ||||| | ||||| Sbjct 573 TATTTTTGCTGGAAAGCAGCTTGAAGATGGACGCACACTATCTGACTACAATATTCAGAA 632 Query 206358 AGAGTCTACTCTTCACCTTGT 206378 || || ||| | ||||| || Sbjct 633 GGAATCAACTTTGCACCTGGT 653 >seq28654 Length=3315 Score = 123 bits (136), Expect = 6e-23 Identities = 150/202 (74%), Gaps = 2/202 (1%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 || |||||| |||||| || || |||||||| || ||||||||||| || || ||| Sbjct 1243 CAAATATTTGTCAAAACACTTACTGGAAAAACAATAACTTTGGAAGTTGAGCCATCAGAC 1184 Query 206233 ACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 || | ||| || ||||| || ||||||||| || ||||||||| || || || Sbjct 1183 ACCATTGAAAATGTTAAAGCTAA-GATTCAAGATAAGGAAGGAATTCCTCCAGATCAACA 1125 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 | | ||||||||||| || || || |||||||||| | || || | || ||||| | Sbjct 1124 ACGTCTTATCTTCGCTGGTAAACAACTGGAAGATGGCCGCACCCTGTCTGACTACAATAT 1065 Query 206352 CCAGAAAGAGTCTACTCTTCAC 206373 |||||||||||| || |||||| Sbjct 1064 CCAGAAAGAGTCGACCCTTCAC 1043 Score = 118 bits (130), Expect = 2e-21 Identities = 146/200 (73%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 || |||||| ||| || || ||||| || || || ||| |||| ||||| |||||| Sbjct 1699 CAAATATTTGTCAAGACACTAACAGGCAAGACTATAACTCTGGAGGTGGAGCCATCTGAC 1640 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | ||| |||||| ||||||||||| ||||| || ||| || || ||| Sbjct 1639 ACCATTGAAAATGTAAAGGCTAAGATTCAAGATAAAGAGGGTATTCCCCCAGATCAACAA 1580 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | |||||||| || || |||||| | |||||||| | || || | || |||||| || Sbjct 1579 CGTCTTATCTTTGCTGGCAAGCAGCTAGAAGATGGTCGCACCCTGTCTGACTACAACATC 1520 Query 206353 CAGAAAGAGTCTACTCTTCA 206372 || ||||||||||| ||||| Sbjct 1519 CAAAAAGAGTCTACCCTTCA 1500 Score = 114 bits (126), Expect = 3e-20 Identities = 164/228 (72%), Gaps = 5/228 (2%) Strand=Plus/Minus Query 206164 AAAATGTACCAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAA 206223 |||||| ||||| ||| ||||| || || || ||||| || ||||||||||| ||| Sbjct 2617 AAAATG---CAGATCTTTGTGAAAACACTTACGGGTAAAACCATTACTTTGGAAGTTGAA 2561 Query 206224 AGTTCTGACACAGTCGAATCAGTAAA-GCAAAAGATTCAAGAAAAAGAAGGAATTTTGCC 206282 ||| || || | ||| ||||| || ||| |||||||| || ||||| ||| || Sbjct 2560 CCTTCCGATACTATTGAAAATGTAAAAGCCAAA-ATTCAAGACAAGGAAGGCATTCCTCC 2502 Query 206283 GGACGCTCAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGA 206342 || ||| | | || ||||| |||||||| |||||||| ||| | ||| | | || Sbjct 2501 AGATCAACAACGTTTGATTTTCGCTGGAAAGCAATTGGAAGACGGACGCACTCTTTCTGA 2442 Query 206343 TTACAACGTCCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 || || | || ||||| |||||||||||| | || ||| | ||||| Sbjct 2441 CTATAATATTCAAAAAGAATCTACTCTTCACTTGGTATTGCGTCTTCG 2394 Score = 100 bits (110), Expect = 7e-16 Identities = 145/202 (72%), Gaps = 2/202 (1%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 || |||||| |||||| | || ||||| || || || ||||||| ||| |||||| Sbjct 1471 CAAATATTTGTCAAAACATTGACTGGAAAGACCATTACCCTGGAAGTAGAACCATCTGAC 1412 Query 206233 ACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 ||| |||| || ||||| ||| || || || || || || || || ||| || Sbjct 1411 ACAATCGAGAATGTCAAAGCTAAA-ATACAGGATAAGGAGGGCATCCCCCCAGACCAACA 1353 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 | || || || || |||||||| ||||||||||| | |||||| | |||||||| | Sbjct 1352 GCGTCTCATTTTTGCTGGAAAGCAATTGGAAGATGGTCGCACTTTGTCTGATTACAATAT 1293 Query 206352 CCAGAAAGAGTCTACTCTTCAC 206373 ||||||||||| || || ||| Sbjct 1292 TCAGAAAGAGTCAACCCTGCAC 1271 Score = 96.9 bits (106), Expect = 8e-15 Identities = 155/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||||| || || ||||| || || || ||||||||||| ||||| Sbjct 1927 CAGATTTTTGTTAAAACCCTAACTGGAAAGACCATTACCCTGGAAGTGGAACCCTCTGAT 1868 Query 206233 ACAGTCGAATCAGTAAA-GCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 || | ||| ||||| || ||| || ||||| ||||| || || || || || Sbjct 1867 ACTATTGAAAATGTAAAAGCTAAA-ATCCAAGACAAAGAGGGCATCCCACCTGATCAGCA 1809 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 | |||||||| || || ||||| ||||||||||| | || | | || |||||| | Sbjct 1808 GCGTCTTATCTTTGCTGGTAAGCAATTGGAAGATGGTCGCACCCTCTCTGACTACAACAT 1749 Query 206352 CCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCGA 206391 ||| || |||||||| ||||| || || || | || ||| Sbjct 1748 CCAAAAGGAGTCTACCCTTCATCTAGTACTGCGTCTGCGA 1709 Score = 96.9 bits (106), Expect = 8e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || || || ||||||||||| |||||||| || || || || ||| Sbjct 2383 CAGATCTTTGTTAAGACTCTTACAGGAAAAACCATCACTTTAGAGGTAGAGCCGTCCGAC 2324 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || ||||| || ||| |||||| ||||| ||||| || ||| || || || Sbjct 2323 ACTATCGAAAATGTGAAGGCAAAGATCCAAGACAAAGAGGGTATTCCCCCAGATCAACAG 2264 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 || ||||| || || ||||| || |||||||||| | || || | ||||| || | Sbjct 2263 AGGCTTATTTTTGCTGGAAAACAACTGGAAGATGGCCGTACATTATCTGATTATAATATT 2204 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 || || || ||||| || || | || ||| | ||||| Sbjct 2203 CAAAAGGAATCTACCCTACATTTAGTATTGCGGCTTCG 2166 Score = 91.5 bits (100), Expect = 3e-13 Identities = 73/88 (83%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 204769 GTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTCCAGCTG 204828 |||||| || ||||||||||||| ||| ||||||| || || | ||||||||||| || Sbjct 1043 GTGAAGGGTCGACTCTTTCTGGATATTGTAGTCAGACAGGGTGCGGCCATCTTCCAGTTG 1102 Query 204829 CTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 || || ||||||||||| ||||||||| Sbjct 1103 TTTACCAGCGAAGATAAGACGTTGTTGA 1130 Score = 91.5 bits (100), Expect = 3e-13 Identities = 83/105 (79%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 ||||| | ||| || | |||||||||||| ||||| || | ||||||||||| | ||| Sbjct 2394 CGAAGACGCAATACCAAGTGAAGAGTAGATTCTTTTTGAATATTATAGTCAGAAAGAGTG 2453 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 | ||| ||||||| |||||||| ||||| || | ||||||||| Sbjct 2454 CGTCCGTCTTCCAATTGCTTTCCAGCGAAAATCAAACGTTGTTGA 2498 Score = 87.8 bits (96), Expect = 4e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || || || ||||| ||||| ||||| || ||||| ||| || ||| Sbjct 1015 CAGATCTTTGTAAAGACACTGACAGGGAAAACTATCACATTAGAAGTTGAACCCTCAGAC 956 Query 206233 ACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 || | ||| || ||||| || ||| ||||| ||||| || ||| || || || Sbjct 955 ACTATTGAAAATGTTAAAGCTAA-GATCCAAGACAAAGAGGGTATTCCCCCAGATCAACA 897 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 | | || || ||||| || |||||| |||| ||||| | ||| | | || || || | Sbjct 896 ACGTCTCATTTTCGCTGGCAAGCAGCTGGAGGATGGCCGTACTCTCTCTGACTATAATAT 837 Query 206352 CCAGAAAGAGTCTACTCTTCACCTTGTTTT 206381 ||||||||||| ||| | ||| | || || Sbjct 836 TCAGAAAGAGTCCACTTTGCACTTGGTATT 807 Score = 86.0 bits (94), Expect = 1e-11 Identities = 136/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || || || || || || || ||||||||||| ||||| || ||| Sbjct 787 CAGATCTTTGTTAAGACTCTTACTGGGAAGACCATCACTTTGGAGGTGGAGCCATCCGAC 728 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || ||||| || ||| ||||| ||||| || || || ||| || ||| || Sbjct 727 ACTATCGAAAATGTTAAGGCTAAGATCCAAGACAAGGAGGGCATTCCCCCAGACCAACAG 668 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || ||||| || || || ||||| || ||||| | ||| || | || || ||| || Sbjct 667 CGTCTCATCTTTGCTGGTAAACAGTTAGAGGATGGCCGCACTCTGTCGGACTATAACATC 608 Query 206353 CAGAAAGAGTCTACT 206367 || ||||| |||||| Sbjct 607 CAAAAAGAATCTACT 593 Score = 86.0 bits (94), Expect = 1e-11 Identities = 71/87 (82%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 204770 TGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGC 204829 ||||| ||||||||||| |||| || ||||||| || || | |||||||| |||||| Sbjct 1500 TGAAGGGTAGACTCTTTTTGGATGTTGTAGTCAGACAGGGTGCGACCATCTTCTAGCTGC 1559 Query 204830 TTTCCGGCGAAGATAAGCCGTTGTTGA 204856 || || || |||||||| ||||||||| Sbjct 1560 TTGCCAGCAAAGATAAGACGTTGTTGA 1586 Score = 84.2 bits (92), Expect = 5e-11 Identities = 76/96 (79%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 204761 AAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCT 204820 || || | ||| | ||| ||||||||||| | ||||||||||| | ||| | ||||| Sbjct 807 AATACCAAGTGCAAAGTGGACTCTTTCTGAATATTATAGTCAGAGAGAGTACGGCCATCC 866 Query 204821 TCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 ||||||||||| || ||||| || || ||||||||| Sbjct 867 TCCAGCTGCTTGCCAGCGAAAATGAGACGTTGTTGA 902 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1177625187324443