Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20pachinus_20[genbank_20GCA_5F900068735.1_202017-04-26] 277,083 sequences; 279,264,790 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq10526 158 1e-33 seq170880 143 3e-29 seq41046 109 5e-19 seq28654 107 2e-18 seq27511 93.3 4e-14 seq76306 89.7 5e-13 seq133356 84.2 2e-11 >seq10526 Length=5062 Score = 158 bits (174), Expect = 1e-33 Identities = 369/546 (68%), Gaps = 8/546 (1%) Strand=Plus/Minus Query 24784 GAAAATAACAAGCGTTTCGAG-AAACATCCCGATAAAATTGTAGCGGCTTACTTCGTCGA 24842 ||||| || |||| ||| || ||||||| || ||| |||| | || |||||||| || Sbjct 4165 GAAAAAAATAAGCCGTTCAAGCAAACATCTGGA-AAAGTTGTGGGTGCCTACTTCGTAGA 4107 Query 24843 GTGGGGCGTGTATCAGCGGCAGTTTTCCGTCGACAAAGTGCCCGCGCCCAATTTGTCGCA 24902 ||||| || |||| || | || |||| || | || || ||| | | || Sbjct 4106 ATGGGGTGTCTATCCTAGGAAATTCCCCGTGGATCGTATACCTATACCTAATCTTACTCA 4047 Query 24903 CTTGCTATACGCTTTCGTGCCGATATGCGGCGGCGAGGGCATAAACGACGCTCTCAAAAC 24962 ||||| |||| || | || || |||||||| || ||||| || || | | |||| Sbjct 4046 TTTGCTCTACGGCTTTATTCCAATTTGCGGCGGTGACGGCATTAATGATAGTTT-AAAAG 3988 Query 24963 AGTTCCC-GGTAGTTTTGAGGCGCTGCAGCGCTCGTGCGCCGGGCGCGACGATTTTAAGG 25021 || || || ||||| | || || ||||| || || ||| || || || || || | Sbjct 3987 AGATCGAAGGCAGTTTCCAAGCACTACAGCGATCCTGTAGCGGCCGTGAGGACTTCAAAG 3928 Query 25022 TAACCATTCACGACCCCTGGGCCGCCATCCAGAAACCGCAGAAAGGCGTCTCCACTTGGA 25081 | | || ||||| || ||||| || | || ||||| || ||||| | || | |||| Sbjct 3927 TCTCAATCCACGATCCATGGGCAGCATTACAAAAACCACAAAAAGGATTGTCTTCATGGA 3868 Query 25082 ACGAGCCGTACAAAGGCAACTTTGGACAATTAATGGGCCTGAAATTAGCTAATCCACACT 25141 ||||||| ||||||||||||||||| ||||||||| || ||| ||| || | | Sbjct 3867 ACGAGCCCTACAAAGGCAACTTTGGCCAATTAATGTCACTAAAACAAGCCCGCCCTGAAT 3808 Query 25142 TGAAGGTGCTGGCGTCGATCGGCGGCTGGAC-CTTGTCAGATCCATTCTTTCACATGCAT 25200 ||||| | || | || || || || ||||| |||| | ||||| ||||| | | Sbjct 3807 TGAAGATTCTTCCCTCTATTGGTGGGTGGACGCTTG-CCGATCCTTTCTTCTTTTTAGTT 3749 Query 25201 GACGCGACCGTGCGTCAAACG-TTCATCGATTCCGTCGAGGACTTTCTCTTGACTTGGAA 25259 ||| | | | | ||| || | | || || |||| ||||| | || ||||| Sbjct 3748 GACAAATCTAAGAG-AACACGATTTGTGCAGTCAGTAAAGGAGTTTCTTCTAACATGGAA 3690 Query 25260 GTTTTTCGACGGCGTCGACATTGACTGGGAGTTTCCGGGCGGCAAAGGGGCCAATCCTCA 25319 || ||||| || || || || || |||||||| || || |||||||| || || ||| | Sbjct 3689 ATTCTTCGATGGTGTTGATATCGATTGGGAGTTCCCTGGTGGCAAAGGTGCTAACCCTGA 3630 Query 25320 CGTCGG 25325 | |||| Sbjct 3629 CCTCGG 3624 >seq170880 Length=1133 Score = 143 bits (158), Expect = 3e-29 Identities = 345/514 (67%), Gaps = 15/514 (3%) Strand=Plus/Minus Query 147884 AGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGCGCACCTTTACGCTTT---CCGC 147940 ||||||||| |||||| || |||| ||||| ||| | |||||| ||||| || | Sbjct 1087 AGATGTCGGGGTGCCACGGCTCAAGGTAGATGGCGAACGCACCCGGGCGCTTGTTCCCAC 1028 Query 147941 CCTGGTCGACATGGCGCACCATGTTGTTAAACACGCGCACCATGGGTTCCAGGCCGCTCG 148000 |||||||||||| ||| | ||||||| || ||||| | |||||| | | |||| ||| Sbjct 1027 CCTGGTCGACATAGCGGGCAGTGTTGTTGAAGACGCGGAGCATGGGCACGATGCCGTTCG 968 Query 148001 CAGT-GCCGTTGGTGGAATTGATCTTGCTGCCGCGGGCTCGCACTTCGTGCACGTTAACG 148059 ||| ||||| ||| | ||| | ||| ||| ||| || | | ||| | || | | Sbjct 967 -AGTATCCGTTTGTGCCACCGATGTAGCTTCCGGAGGCACGGATGTTGTGAATGTGGAGG 909 Query 148060 CCAATGCCGCCGCCGTACTTTGATATGGCAGCGCAATCGCC--CAATGTCGTGTAGATGC 148117 || || |||||| || ||| || || ||||| || | || || |||||||| Sbjct 908 CCGATACCGCCGGCGGTCTTGGAGATCATGGCGCA--CGTCTTCAGGGTGTCGTAGATGC 851 Query 148118 CGTCGATGCTGTCGTTTTTGA-CGCCA--AGCAAAAAACACGAACACATTTGCGGAATCC 148174 | ||||| ||||| || | ||||| || || || ||| | | || || Sbjct 850 CCTCGATCGAGTCGTCCTTCATCGCCACGAGGAAGCAAGACGCA---AGCTGGGGGTGGG 794 Query 148175 GCGTTCCCGCCGAGAAAAGGGTGGGACTCGCGTGCGTAAACAATTTTTGACTCATCATGC 148234 |||| || || ||| |||||||| || || || || | |||| ||| | Sbjct 793 GCGTGCCAGCATTGAAGAGGGTGGGCGAGGCATGGGTGAAGTACTTTTCGGACATGTAGT 734 Query 148235 GATACGTCTCAATAGCGTCTTCGATGTCGTCGCCGTGAATGCCCAGCGCGACGCGCATGA 148294 |||||||| || || || || || |||||| ||||| | ||||||||||||| Sbjct 733 TGTACGTCTCGATCGCACGCGTGACGTTGTTGCCGTGGATGCCGATAGCGACGCGCATGA 674 Query 148295 GCATGTGCTGTGGTCGTTCGGCAACTTGATTGTTGATCTTGAGAAGATATCCATTTTCGA 148354 |||||||||| || || ||||| || | || ||| |||||| || || | Sbjct 673 GCATGTGCTGCGGGCGCTCGGCGACGCGGCCGTCGATGCGGAGAAGGTAGGACCGCTCAA 614 Query 148355 GGGTTTTGTAACCAAAGTACTTGTAATCAAAATC 148388 |||| ||| | |||||||| ||||||| ||| || Sbjct 613 GGGTCTTGAAGCCAAAGTAATTGTAATTAAAGTC 580 >seq41046 Length=7774 Score = 109 bits (120), Expect = 5e-19 Identities = 142/195 (73%), Gaps = 1/195 (1%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 || || ||||||||||||||||| || ||||| |||||| || |||||||| | | Sbjct 7188 GATTCCTTTTGAATGTTGTAGTCAGACAATGTACGTCCATCTTCTAGTTGTTTACCAGCA 7247 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| | ||| || || ||||| || || ||||| ||||| ||||| ||| ||| Sbjct 7248 AAGATCAAACGTTGCTGGTCTGGTGGAATACCTTCCTTATCTTGGATTTTAGCTTTTAAC 7307 Query 132050 -TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 132108 | ||| | |||||| | | |||||| |||| || | |||||||| || || || || Sbjct 7308 ATTTTCTATAGTATCAGAGGCCTCCACCTCGAGGGTAATGGTTTTACCCGTAAGGGTCTT 7367 Query 132109 TATGAAAATCTGCAT 132123 | |||||| ||||| Sbjct 7368 GACGAAAATTTGCAT 7382 >seq28654 Length=3315 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974 ||||| || | | | |||||||| || || |||||||| || ||| || |||||| Sbjct 1038 ACCAAGTGAAGGGTCGACTCTTTCTGGATATTGTAGTCAGACAGGGTGCGGCCATCTTCC 1097 Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034 || |||||||| | |||| ||||| |||||||||||||| || ||||| ||||| | Sbjct 1098 AGTTGTTTACCAGCGAAGATAAGACGTTGTTGATCTGGAGGAATTCCTTCCTTATCTTGA 1157 Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094 || || ||| | | ||| | || || | ||||| ||||| | || | ||||| Sbjct 1158 ATCTTAGCTTTAACATTTTCAATGGTGTCTGATGGCTCAACTTCCAAAGTTATTGTTTTT 1217 Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||| || ||||| | || || ||||| Sbjct 1218 CCAGTAAGTGTTTTGACAAATATTTGCAT 1246 Score = 105 bits (116), Expect = 6e-18 Identities = 156/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 131903 CGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTA 131962 |||| |||| || | ||| | | | ||||| ||||| ||||||||||| | ||| Sbjct 1710 CGCAGACGCAGTACTAGATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCAGAGAGGGTG 1769 Query 131963 CGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCT 132022 || |||||| | || ||||| | | |||| |||||||| ||||| || || ||||| Sbjct 1770 CGACCATCTTCCAATTGCTTACCAGCAAAGATAAGACGCTGCTGATCAGGTGGGATGCCC 1829 Query 132023 TCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACC 132082 ||||| || ||||| ||| | | ||| | |||||| | || |||||||| | Sbjct 1830 TCTTTGTCTTGGATTTTAGCTTTTACATTTTCAATAGTATCAGAGGGTTCCACTTCCAGG 1889 Query 132083 GTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || | || || ||||| || ||||| | ||||||||||| Sbjct 1890 GTAATGGTCTTTCCAGTTAGGGTTTTAACAAAAATCTGCAT 1930 Score = 98.7 bits (108), Expect = 9e-16 Identities = 153/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTC-GCTCATGGTACGCGA 131967 ||||| || ||||||| | | || || |||||||| || || || | | ||| |||| Sbjct 2172 CGCAATACTAAATGTAGGGTAGATTCCTTTTGAATATTATAATCAGATAATG-TACGGCC 2230 Query 131968 ATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTT 132027 |||||| || ||||| || | | | || || | |||||||||||| || || || ||||| Sbjct 2231 ATCTTCCAGTTGTTTTCCAGCAAAAATAAGCCTCTGTTGATCTGGGGGAATACCCTCTTT 2290 Query 132028 ATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAG 132087 || || ||| |||| | ||| | ||| |||| |||||| || || | || | Sbjct 2291 GTCTTGGATCTTTGCCTTCACATTTTCGATAGTGTCGGACGGCTCTACCTCTAAAGTGAT 2350 Query 132088 CGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||| || || ||||| || | || |||||||| Sbjct 2351 GGTTTTTCCTGTAAGAGTCTTAACAAAGATCTGCAT 2386 Score = 96.9 bits (106), Expect = 3e-15 Identities = 154/221 (70%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 131903 CGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTA 131962 |||| |||| || ||||| | | | ||||||||||| ||||||||||| || ||| Sbjct 1482 CGCAGACGCAGTACTAAATGAAGGGTAGACTCTTTTTGGATGTTGTAGTCAGACAGGGTG 1541 Query 131963 CGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCT 132022 || |||||| ||||| || || | | |||| ||||| ||||||||||| || || || Sbjct 1542 CGACCATCTTCTAGCTGCTTGCCAGCAAAGATAAGACGTTGTTGATCTGGGGGAATACCC 1601 Query 132023 TCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACC 132082 |||||||| ||| || || | | ||| | || || | |||||||| || | Sbjct 1602 TCTTTATCTTGAATCTTAGCCTTTACATTTTCAATGGTGTCAGATGGCTCCACCTCCAGA 1661 Query 132083 GTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || | || || || || || || || | || || ||||| Sbjct 1662 GTTATAGTCTTGCCTGTTAGTGTCTTGACAAATATTTGCAT 1702 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 ||||| ||||| || | | || ||||||||||| || ||||| | || || Sbjct 2400 CGCAATACCAAGTGAAGAGTAGATTCTTTTTGAATATTATAGTCAGAAAGAGTGCGTCCG 2459 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| | || || || | | || | ||| |||||||||||||| |||||||| || Sbjct 2460 TCTTCCAATTGCTTTCCAGCGAAAATCAAACGTTGTTGATCTGGAGGAATGCCTTCCTTG 2519 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || |||||| ||| | | ||| | |||||||| || || ||||| | || | Sbjct 2520 TCTTGAATTTTGGCTTTTACATTTTCAATAGTATCGGAAGGTTCAACTTCCAAAGTAATG 2579 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 |||||||| || || ||||| | || |||||||| Sbjct 2580 GTTTTACCCGTAAGTGTTTTCACAAAGATCTGCAT 2614 Score = 89.7 bits (98), Expect = 5e-13 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 || |||||||| ||||| ||||| || || || ||| || | ||||||||| | | Sbjct 597 GATTCTTTTTGGATGTTATAGTCCGACAGAGTGCGGCCATCCTCTAACTGTTTACCAGCA 656 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| ||||||||||| ||||| || ||||| || || || || || || | Sbjct 657 AAGATGAGACGCTGTTGGTCTGGGGGAATGCCCTCCTTGTCTTGGATCTTAGCCTTAACA 716 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | ||| | ||| |||| |||||||| || | || | || || ||||| ||||| || Sbjct 717 TTTTCGATAGTGTCGGATGGCTCCACCTCCAAAGTGATGGTCTTCCCAGTAAGAGTCTTA 776 Query 132110 ATGAAAATCTGCAT 132123 | || |||||||| Sbjct 777 ACAAAGATCTGCAT 790 Score = 89.7 bits (98), Expect = 5e-13 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 || |||||||| ||||||||||| || ||||| |||||| | || || || | | Sbjct 1965 GATTCTTTTTGGATGTTGTAGTCAGACAGTGTACGACCATCTTCTAATTGCTTGCCCGCA 2024 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 | || ||||| |||||||| ||||| ||||||||||| || ||||| ||||| Sbjct 2025 AAAATAAGACGTTGTTGATCCGGAGGAATGCCTTCTTTGTCTTGGATTTTAGCTTTCACA 2084 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | ||| | || || | | || ||||| | || | ||||| ||||| || ||||| Sbjct 2085 TTTTCAATTGTGTCAGAAGCTTCAACTTCTAAAGTAATTGTTTTTCCAGTGAGTGTTTTA 2144 Query 132110 ATGAAAATCTGCAT 132123 | || || ||||| Sbjct 2145 ACAAAGATTTGCAT 2158 >seq27511 Length=800 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 131908 GCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGA 131967 ||||| ||||| || | | || || || ||||| || || || || ||||| Sbjct 432 GCGCAGCACCAAGTGCAAAGTAGATTCCTTCTGAATATTATAATCTGACAATGTACGTCC 373 Query 131968 ATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTT 132027 |||||| |||||||| || | | | || || | |||||| || ||||| ||||||||||| Sbjct 372 ATCTTCCAGCTGTTTTCCTGCAAAAATAAGCCTCTGTTGGTCAGGAGGAATGCCTTCTTT 313 Query 132028 ATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAG 132087 || ||| ||| || | | ||| | ||||| | | |||||||| | || | Sbjct 312 GTCTTGAATCTTTGCCTTAACATTTTCTATTGTATCAGAAGCTTCCACTTCCAAAGTGAT 253 Query 132088 CGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||| |||||||| || |||| ||||| ||||| Sbjct 252 AGTTTTGCCAGTCAGTGTCTTTACAAAAATTTGCAT 217 >seq76306 Length=316 Score = 89.7 bits (98), Expect = 5e-13 Identities = 150/217 (69%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 |||||||| || || | | || || || || || || ||||| || || ||| | Sbjct 271 CGCAAAACTAAGTGCAAAGTAGATTCCTTCTGGATATTATAGTCTGACAATGTGCGCCCA 212 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| || || || |||| | || || | |||||||||||||| |||||||| || Sbjct 211 TCTTCCAGTTGCTTTCCGGCGAAAATCAGTCTTTGTTGATCTGGAGGAATGCCTTCCTTG 152 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || ||| ||| || | | ||| | ||||| | | |||||||| | || | Sbjct 151 TCTTGAATCTTTGCCTTTACGTTTTCGATTGTATCAGAAGCTTCCACTTCCAATGTGATG 92 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATGA 132125 ||||| ||||| | |||||||| ||| || ||||||| Sbjct 91 GTTTTCCCAGTTAAAGTTTTTACGAAGATTTGCATGA 55 >seq133356 Length=434 Score = 84.2 bits (92), Expect = 2e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 115650 GGCTTCTATTACACGGGCGTCGGTGACGAAGTGCGTTGCGCTTTCTGCAAAGTGGAGATT 115709 ||||||||||| |||| ||| || ||||| || ||||| || || ||||| || ||| Sbjct 221 GGCTTCTATTATCTGGGCCGCGGCGATGAAGTACGCTGCGCGTTTTGTAAAGTAGAAATT 162 Query 115710 ATGAGATGGCAGCCCGGAGACGATCCATTGACGGACCACAAACGATGGGCGCCTCAGTG 115768 |||| |||| | || |||||||| | ||||||| | || |||||||||||||| Sbjct 161 ATGAAATGGGTTGCGGGCGACGATCCCGCCAAGGACCACCAGCGCTGGGCGCCTCAGTG 103 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 474960439235880