Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heliconius_20pachinus_20[genbank_20GCA_5F900068735.1_202017-04-26]
277,083 sequences; 279,264,790 total letters
Query= NC_025960.1
Length=148981
Score E
Sequences producing significant alignments: (Bits) Value
seq10526 158 1e-33
seq170880 143 3e-29
seq41046 109 5e-19
seq28654 107 2e-18
seq27511 93.3 4e-14
seq76306 89.7 5e-13
seq133356 84.2 2e-11
>seq10526
Length=5062
Score = 158 bits (174), Expect = 1e-33
Identities = 369/546 (68%), Gaps = 8/546 (1%)
Strand=Plus/Minus
Query 24784 GAAAATAACAAGCGTTTCGAG-AAACATCCCGATAAAATTGTAGCGGCTTACTTCGTCGA 24842
||||| || |||| ||| || ||||||| || ||| |||| | || |||||||| ||
Sbjct 4165 GAAAAAAATAAGCCGTTCAAGCAAACATCTGGA-AAAGTTGTGGGTGCCTACTTCGTAGA 4107
Query 24843 GTGGGGCGTGTATCAGCGGCAGTTTTCCGTCGACAAAGTGCCCGCGCCCAATTTGTCGCA 24902
||||| || |||| || | || |||| || | || || ||| | | ||
Sbjct 4106 ATGGGGTGTCTATCCTAGGAAATTCCCCGTGGATCGTATACCTATACCTAATCTTACTCA 4047
Query 24903 CTTGCTATACGCTTTCGTGCCGATATGCGGCGGCGAGGGCATAAACGACGCTCTCAAAAC 24962
||||| |||| || | || || |||||||| || ||||| || || | | ||||
Sbjct 4046 TTTGCTCTACGGCTTTATTCCAATTTGCGGCGGTGACGGCATTAATGATAGTTT-AAAAG 3988
Query 24963 AGTTCCC-GGTAGTTTTGAGGCGCTGCAGCGCTCGTGCGCCGGGCGCGACGATTTTAAGG 25021
|| || || ||||| | || || ||||| || || ||| || || || || || |
Sbjct 3987 AGATCGAAGGCAGTTTCCAAGCACTACAGCGATCCTGTAGCGGCCGTGAGGACTTCAAAG 3928
Query 25022 TAACCATTCACGACCCCTGGGCCGCCATCCAGAAACCGCAGAAAGGCGTCTCCACTTGGA 25081
| | || ||||| || ||||| || | || ||||| || ||||| | || | ||||
Sbjct 3927 TCTCAATCCACGATCCATGGGCAGCATTACAAAAACCACAAAAAGGATTGTCTTCATGGA 3868
Query 25082 ACGAGCCGTACAAAGGCAACTTTGGACAATTAATGGGCCTGAAATTAGCTAATCCACACT 25141
||||||| ||||||||||||||||| ||||||||| || ||| ||| || | |
Sbjct 3867 ACGAGCCCTACAAAGGCAACTTTGGCCAATTAATGTCACTAAAACAAGCCCGCCCTGAAT 3808
Query 25142 TGAAGGTGCTGGCGTCGATCGGCGGCTGGAC-CTTGTCAGATCCATTCTTTCACATGCAT 25200
||||| | || | || || || || ||||| |||| | ||||| ||||| | |
Sbjct 3807 TGAAGATTCTTCCCTCTATTGGTGGGTGGACGCTTG-CCGATCCTTTCTTCTTTTTAGTT 3749
Query 25201 GACGCGACCGTGCGTCAAACG-TTCATCGATTCCGTCGAGGACTTTCTCTTGACTTGGAA 25259
||| | | | | ||| || | | || || |||| ||||| | || |||||
Sbjct 3748 GACAAATCTAAGAG-AACACGATTTGTGCAGTCAGTAAAGGAGTTTCTTCTAACATGGAA 3690
Query 25260 GTTTTTCGACGGCGTCGACATTGACTGGGAGTTTCCGGGCGGCAAAGGGGCCAATCCTCA 25319
|| ||||| || || || || || |||||||| || || |||||||| || || ||| |
Sbjct 3689 ATTCTTCGATGGTGTTGATATCGATTGGGAGTTCCCTGGTGGCAAAGGTGCTAACCCTGA 3630
Query 25320 CGTCGG 25325
| ||||
Sbjct 3629 CCTCGG 3624
>seq170880
Length=1133
Score = 143 bits (158), Expect = 3e-29
Identities = 345/514 (67%), Gaps = 15/514 (3%)
Strand=Plus/Minus
Query 147884 AGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGCGCACCTTTACGCTTT---CCGC 147940
||||||||| |||||| || |||| ||||| ||| | |||||| ||||| || |
Sbjct 1087 AGATGTCGGGGTGCCACGGCTCAAGGTAGATGGCGAACGCACCCGGGCGCTTGTTCCCAC 1028
Query 147941 CCTGGTCGACATGGCGCACCATGTTGTTAAACACGCGCACCATGGGTTCCAGGCCGCTCG 148000
|||||||||||| ||| | ||||||| || ||||| | |||||| | | |||| |||
Sbjct 1027 CCTGGTCGACATAGCGGGCAGTGTTGTTGAAGACGCGGAGCATGGGCACGATGCCGTTCG 968
Query 148001 CAGT-GCCGTTGGTGGAATTGATCTTGCTGCCGCGGGCTCGCACTTCGTGCACGTTAACG 148059
||| ||||| ||| | ||| | ||| ||| ||| || | | ||| | || | |
Sbjct 967 -AGTATCCGTTTGTGCCACCGATGTAGCTTCCGGAGGCACGGATGTTGTGAATGTGGAGG 909
Query 148060 CCAATGCCGCCGCCGTACTTTGATATGGCAGCGCAATCGCC--CAATGTCGTGTAGATGC 148117
|| || |||||| || ||| || || ||||| || | || || ||||||||
Sbjct 908 CCGATACCGCCGGCGGTCTTGGAGATCATGGCGCA--CGTCTTCAGGGTGTCGTAGATGC 851
Query 148118 CGTCGATGCTGTCGTTTTTGA-CGCCA--AGCAAAAAACACGAACACATTTGCGGAATCC 148174
| ||||| ||||| || | ||||| || || || ||| | | || ||
Sbjct 850 CCTCGATCGAGTCGTCCTTCATCGCCACGAGGAAGCAAGACGCA---AGCTGGGGGTGGG 794
Query 148175 GCGTTCCCGCCGAGAAAAGGGTGGGACTCGCGTGCGTAAACAATTTTTGACTCATCATGC 148234
|||| || || ||| |||||||| || || || || | |||| ||| |
Sbjct 793 GCGTGCCAGCATTGAAGAGGGTGGGCGAGGCATGGGTGAAGTACTTTTCGGACATGTAGT 734
Query 148235 GATACGTCTCAATAGCGTCTTCGATGTCGTCGCCGTGAATGCCCAGCGCGACGCGCATGA 148294
|||||||| || || || || || |||||| ||||| | |||||||||||||
Sbjct 733 TGTACGTCTCGATCGCACGCGTGACGTTGTTGCCGTGGATGCCGATAGCGACGCGCATGA 674
Query 148295 GCATGTGCTGTGGTCGTTCGGCAACTTGATTGTTGATCTTGAGAAGATATCCATTTTCGA 148354
|||||||||| || || ||||| || | || ||| |||||| || || |
Sbjct 673 GCATGTGCTGCGGGCGCTCGGCGACGCGGCCGTCGATGCGGAGAAGGTAGGACCGCTCAA 614
Query 148355 GGGTTTTGTAACCAAAGTACTTGTAATCAAAATC 148388
|||| ||| | |||||||| ||||||| ||| ||
Sbjct 613 GGGTCTTGAAGCCAAAGTAATTGTAATTAAAGTC 580
>seq41046
Length=7774
Score = 109 bits (120), Expect = 5e-19
Identities = 142/195 (73%), Gaps = 1/195 (1%)
Strand=Plus/Plus
Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989
|| || ||||||||||||||||| || ||||| |||||| || |||||||| | |
Sbjct 7188 GATTCCTTTTGAATGTTGTAGTCAGACAATGTACGTCCATCTTCTAGTTGTTTACCAGCA 7247
Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049
|||| | ||| || || ||||| || || ||||| ||||| ||||| ||| |||
Sbjct 7248 AAGATCAAACGTTGCTGGTCTGGTGGAATACCTTCCTTATCTTGGATTTTAGCTTTTAAC 7307
Query 132050 -TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 132108
| ||| | |||||| | | |||||| |||| || | |||||||| || || || ||
Sbjct 7308 ATTTTCTATAGTATCAGAGGCCTCCACCTCGAGGGTAATGGTTTTACCCGTAAGGGTCTT 7367
Query 132109 TATGAAAATCTGCAT 132123
| |||||| |||||
Sbjct 7368 GACGAAAATTTGCAT 7382
>seq28654
Length=3315
Score = 107 bits (118), Expect = 2e-18
Identities = 149/209 (71%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974
||||| || | | | |||||||| || || |||||||| || ||| || ||||||
Sbjct 1038 ACCAAGTGAAGGGTCGACTCTTTCTGGATATTGTAGTCAGACAGGGTGCGGCCATCTTCC 1097
Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034
|| |||||||| | |||| ||||| |||||||||||||| || ||||| ||||| |
Sbjct 1098 AGTTGTTTACCAGCGAAGATAAGACGTTGTTGATCTGGAGGAATTCCTTCCTTATCTTGA 1157
Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094
|| || ||| | | ||| | || || | ||||| ||||| | || | |||||
Sbjct 1158 ATCTTAGCTTTAACATTTTCAATGGTGTCTGATGGCTCAACTTCCAAAGTTATTGTTTTT 1217
Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCAT 132123
||||| || ||||| | || || |||||
Sbjct 1218 CCAGTAAGTGTTTTGACAAATATTTGCAT 1246
Score = 105 bits (116), Expect = 6e-18
Identities = 156/221 (71%), Gaps = 0/221 (0%)
Strand=Plus/Plus
Query 131903 CGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTA 131962
|||| |||| || | ||| | | | ||||| ||||| ||||||||||| | |||
Sbjct 1710 CGCAGACGCAGTACTAGATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCAGAGAGGGTG 1769
Query 131963 CGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCT 132022
|| |||||| | || ||||| | | |||| |||||||| ||||| || || |||||
Sbjct 1770 CGACCATCTTCCAATTGCTTACCAGCAAAGATAAGACGCTGCTGATCAGGTGGGATGCCC 1829
Query 132023 TCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACC 132082
||||| || ||||| ||| | | ||| | |||||| | || |||||||| |
Sbjct 1830 TCTTTGTCTTGGATTTTAGCTTTTACATTTTCAATAGTATCAGAGGGTTCCACTTCCAGG 1889
Query 132083 GTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123
|| | || || ||||| || ||||| | |||||||||||
Sbjct 1890 GTAATGGTCTTTCCAGTTAGGGTTTTAACAAAAATCTGCAT 1930
Score = 98.7 bits (108), Expect = 9e-16
Identities = 153/216 (71%), Gaps = 2/216 (1%)
Strand=Plus/Plus
Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTC-GCTCATGGTACGCGA 131967
||||| || ||||||| | | || || |||||||| || || || | | ||| ||||
Sbjct 2172 CGCAATACTAAATGTAGGGTAGATTCCTTTTGAATATTATAATCAGATAATG-TACGGCC 2230
Query 131968 ATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTT 132027
|||||| || ||||| || | | | || || | |||||||||||| || || || |||||
Sbjct 2231 ATCTTCCAGTTGTTTTCCAGCAAAAATAAGCCTCTGTTGATCTGGGGGAATACCCTCTTT 2290
Query 132028 ATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAG 132087
|| || ||| |||| | ||| | ||| |||| |||||| || || | || |
Sbjct 2291 GTCTTGGATCTTTGCCTTCACATTTTCGATAGTGTCGGACGGCTCTACCTCTAAAGTGAT 2350
Query 132088 CGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123
||||| || || ||||| || | || ||||||||
Sbjct 2351 GGTTTTTCCTGTAAGAGTCTTAACAAAGATCTGCAT 2386
Score = 96.9 bits (106), Expect = 3e-15
Identities = 154/221 (70%), Gaps = 0/221 (0%)
Strand=Plus/Plus
Query 131903 CGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTA 131962
|||| |||| || ||||| | | | ||||||||||| ||||||||||| || |||
Sbjct 1482 CGCAGACGCAGTACTAAATGAAGGGTAGACTCTTTTTGGATGTTGTAGTCAGACAGGGTG 1541
Query 131963 CGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCT 132022
|| |||||| ||||| || || | | |||| ||||| ||||||||||| || || ||
Sbjct 1542 CGACCATCTTCTAGCTGCTTGCCAGCAAAGATAAGACGTTGTTGATCTGGGGGAATACCC 1601
Query 132023 TCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACC 132082
|||||||| ||| || || | | ||| | || || | |||||||| || |
Sbjct 1602 TCTTTATCTTGAATCTTAGCCTTTACATTTTCAATGGTGTCAGATGGCTCCACCTCCAGA 1661
Query 132083 GTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123
|| | || || || || || || || | || || |||||
Sbjct 1662 GTTATAGTCTTGCCTGTTAGTGTCTTGACAAATATTTGCAT 1702
Score = 91.5 bits (100), Expect = 1e-13
Identities = 149/215 (69%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968
||||| ||||| || | | || ||||||||||| || ||||| | || ||
Sbjct 2400 CGCAATACCAAGTGAAGAGTAGATTCTTTTTGAATATTATAGTCAGAAAGAGTGCGTCCG 2459
Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028
||||| | || || || | | || | ||| |||||||||||||| |||||||| ||
Sbjct 2460 TCTTCCAATTGCTTTCCAGCGAAAATCAAACGTTGTTGATCTGGAGGAATGCCTTCCTTG 2519
Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088
|| |||||| ||| | | ||| | |||||||| || || ||||| | || |
Sbjct 2520 TCTTGAATTTTGGCTTTTACATTTTCAATAGTATCGGAAGGTTCAACTTCCAAAGTAATG 2579
Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123
|||||||| || || ||||| | || ||||||||
Sbjct 2580 GTTTTACCCGTAAGTGTTTTCACAAAGATCTGCAT 2614
Score = 89.7 bits (98), Expect = 5e-13
Identities = 136/194 (70%), Gaps = 0/194 (0%)
Strand=Plus/Plus
Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989
|| |||||||| ||||| ||||| || || || ||| || | ||||||||| | |
Sbjct 597 GATTCTTTTTGGATGTTATAGTCCGACAGAGTGCGGCCATCCTCTAACTGTTTACCAGCA 656
Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049
|||| ||||||||||| ||||| || ||||| || || || || || || |
Sbjct 657 AAGATGAGACGCTGTTGGTCTGGGGGAATGCCCTCCTTGTCTTGGATCTTAGCCTTAACA 716
Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109
| ||| | ||| |||| |||||||| || | || | || || ||||| ||||| ||
Sbjct 717 TTTTCGATAGTGTCGGATGGCTCCACCTCCAAAGTGATGGTCTTCCCAGTAAGAGTCTTA 776
Query 132110 ATGAAAATCTGCAT 132123
| || ||||||||
Sbjct 777 ACAAAGATCTGCAT 790
Score = 89.7 bits (98), Expect = 5e-13
Identities = 136/194 (70%), Gaps = 0/194 (0%)
Strand=Plus/Plus
Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989
|| |||||||| ||||||||||| || ||||| |||||| | || || || | |
Sbjct 1965 GATTCTTTTTGGATGTTGTAGTCAGACAGTGTACGACCATCTTCTAATTGCTTGCCCGCA 2024
Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049
| || ||||| |||||||| ||||| ||||||||||| || ||||| |||||
Sbjct 2025 AAAATAAGACGTTGTTGATCCGGAGGAATGCCTTCTTTGTCTTGGATTTTAGCTTTCACA 2084
Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109
| ||| | || || | | || ||||| | || | ||||| ||||| || |||||
Sbjct 2085 TTTTCAATTGTGTCAGAAGCTTCAACTTCTAAAGTAATTGTTTTTCCAGTGAGTGTTTTA 2144
Query 132110 ATGAAAATCTGCAT 132123
| || || |||||
Sbjct 2145 ACAAAGATTTGCAT 2158
>seq27511
Length=800
Score = 93.3 bits (102), Expect = 4e-14
Identities = 150/216 (69%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 131908 GCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGA 131967
||||| ||||| || | | || || || ||||| || || || || |||||
Sbjct 432 GCGCAGCACCAAGTGCAAAGTAGATTCCTTCTGAATATTATAATCTGACAATGTACGTCC 373
Query 131968 ATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTT 132027
|||||| |||||||| || | | | || || | |||||| || ||||| |||||||||||
Sbjct 372 ATCTTCCAGCTGTTTTCCTGCAAAAATAAGCCTCTGTTGGTCAGGAGGAATGCCTTCTTT 313
Query 132028 ATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAG 132087
|| ||| ||| || | | ||| | ||||| | | |||||||| | || |
Sbjct 312 GTCTTGAATCTTTGCCTTAACATTTTCTATTGTATCAGAAGCTTCCACTTCCAAAGTGAT 253
Query 132088 CGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123
||||| |||||||| || |||| ||||| |||||
Sbjct 252 AGTTTTGCCAGTCAGTGTCTTTACAAAAATTTGCAT 217
>seq76306
Length=316
Score = 89.7 bits (98), Expect = 5e-13
Identities = 150/217 (69%), Gaps = 0/217 (0%)
Strand=Plus/Minus
Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968
|||||||| || || | | || || || || || || ||||| || || ||| |
Sbjct 271 CGCAAAACTAAGTGCAAAGTAGATTCCTTCTGGATATTATAGTCTGACAATGTGCGCCCA 212
Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028
||||| || || || |||| | || || | |||||||||||||| |||||||| ||
Sbjct 211 TCTTCCAGTTGCTTTCCGGCGAAAATCAGTCTTTGTTGATCTGGAGGAATGCCTTCCTTG 152
Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088
|| ||| ||| || | | ||| | ||||| | | |||||||| | || |
Sbjct 151 TCTTGAATCTTTGCCTTTACGTTTTCGATTGTATCAGAAGCTTCCACTTCCAATGTGATG 92
Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATGA 132125
||||| ||||| | |||||||| ||| || |||||||
Sbjct 91 GTTTTCCCAGTTAAAGTTTTTACGAAGATTTGCATGA 55
>seq133356
Length=434
Score = 84.2 bits (92), Expect = 2e-11
Identities = 90/119 (76%), Gaps = 0/119 (0%)
Strand=Plus/Minus
Query 115650 GGCTTCTATTACACGGGCGTCGGTGACGAAGTGCGTTGCGCTTTCTGCAAAGTGGAGATT 115709
||||||||||| |||| ||| || ||||| || ||||| || || ||||| || |||
Sbjct 221 GGCTTCTATTATCTGGGCCGCGGCGATGAAGTACGCTGCGCGTTTTGTAAAGTAGAAATT 162
Query 115710 ATGAGATGGCAGCCCGGAGACGATCCATTGACGGACCACAAACGATGGGCGCCTCAGTG 115768
|||| |||| | || |||||||| | ||||||| | || ||||||||||||||
Sbjct 161 ATGAAATGGGTTGCGGGCGACGATCCCGCCAAGGACCACCAGCGCTGGGCGCCTCAGTG 103
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 474960439235880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |